UCP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.35Å | 1.39Å | |
| N1 | C6 | sing | 1.37Å | 1.39Å | |
| N1 | C1' | sing | 1.46Å | 1.57Å | |
| C2 | O2 | doub | 1.22Å | 1.20Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.29Å | |
| C4 | C5 | sing | 1.42Å | 1.38Å | |
| C5 | C6 | doub | 1.35Å | 1.32Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| C2' | C3' | sing | 1.54Å | 1.53Å | |
| C2' | H2'1 | sing | 1.09Å | 1.12Å | |
| C2' | H2'2 | sing | 1.09Å | 1.11Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.55Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO'3 | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.45Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| C5' | O5' | sing | 1.43Å | 1.29Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| O5' | PA | sing | 1.61Å | 1.54Å | |
| PA | O1A | doub | 1.48Å | 1.53Å | |
| PA | O2A | sing | 1.61Å | 1.58Å | |
| PA | O3A | sing | 1.61Å | 1.61Å | |
| O2A | HOA2 | sing | 0.97Å | 0.95Å | |
| O3A | PB | sing | 1.61Å | 1.50Å | |
| PB | O1B | doub | 1.48Å | 1.46Å | |
| PB | O2B | sing | 1.61Å | 1.63Å | |
| PB | CC | sing | 1.82Å | 1.49Å | |
| O2B | HOB2 | sing | 0.97Å | 0.95Å | |
| CC | PG | sing | 1.82Å | 1.64Å | |
| CC | HCC1 | sing | 1.09Å | 1.11Å | |
| CC | HCC2 | sing | 1.09Å | 1.11Å | |
| PG | O1G | doub | 1.48Å | 1.58Å | |
| PG | O2G | sing | 1.61Å | 1.45Å | |
| PG | O3G | sing | 1.61Å | 1.46Å | |
| O2G | HOG2 | sing | 0.97Å | 0.95Å | |
| O3G | HOG3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 116.7° | 120.6° |
| C2 | N1 | C1' | 150.2° | 119.7° |
| N1 | C2 | O2 | 118.2° | 119.5° |
| N1 | C2 | N3 | 119.9° | 120.9° |
| C6 | N1 | C1' | 93.1° | 119.7° |
| N1 | C6 | C5 | 124.7° | 119.7° |
| N1 | C6 | H6 | 120.4° | 120.1° |
| N1 | C1' | C2' | 113.2° | 110.4° |
| N1 | C1' | O4' | 108.0° | 110.5° |
| N1 | C1' | H1' | 108.1° | 110.4° |
| O2 | C2 | N3 | 121.9° | 119.6° |
| C2 | N3 | C4 | 119.1° | 120.3° |
| C2 | N3 | HN3 | 121.6° | 119.9° |
| C4 | N3 | HN3 | 119.3° | 119.8° |
| N3 | C4 | O4 | 117.5° | 120.3° |
| N3 | C4 | C5 | 123.0° | 119.4° |
| O4 | C4 | C5 | 119.5° | 120.3° |
| C4 | C5 | C6 | 116.6° | 119.1° |
| C4 | C5 | H5 | 123.6° | 120.4° |
| C6 | C5 | H5 | 119.8° | 120.4° |
| C5 | C6 | H6 | 114.8° | 120.2° |
| C2' | C1' | O4' | 109.8° | 104.8° |
| C2' | C1' | H1' | 106.2° | 110.3° |
| C1' | C2' | C3' | 106.4° | 104.1° |
| C1' | C2' | H2'1 | 113.3° | 110.5° |
| C1' | C2' | H2'2 | 113.4° | 110.6° |
| O4' | C1' | H1' | 111.6° | 110.3° |
| C1' | O4' | C4' | 109.5° | 105.4° |
| C3' | C2' | H2'1 | 113.4° | 110.5° |
| C3' | C2' | H2'2 | 113.4° | 110.6° |
| C2' | C3' | O3' | 99.5° | 110.5° |
| C2' | C3' | C4' | 104.1° | 104.2° |
| C2' | C3' | H3' | 128.7° | 110.5° |
| H2'1 | C2' | H2'2 | 97.1° | 110.5° |
| O3' | C3' | C4' | 130.1° | 110.5° |
| O3' | C3' | H3' | 101.6° | 110.5° |
| C3' | O3' | HO'3 | 99.6° | 106.8° |
| C4' | C3' | H3' | 96.9° | 110.5° |
| C3' | C4' | O4' | 110.1° | 104.7° |
| C3' | C4' | C5' | 111.7° | 110.7° |
| C3' | C4' | H4' | 105.6° | 110.3° |
| O4' | C4' | C5' | 102.3° | 110.4° |
| O4' | C4' | H4' | 114.4° | 110.3° |
| C5' | C4' | H4' | 112.9° | 110.3° |
| C4' | C5' | O5' | 110.8° | 109.5° |
| C4' | C5' | H5'1 | 111.7° | 109.5° |
| C4' | C5' | H5'2 | 111.7° | 109.4° |
| O5' | C5' | H5'1 | 111.7° | 109.5° |
| O5' | C5' | H5'2 | 111.8° | 109.4° |
| C5' | O5' | PA | 109.3° | 106.8° |
| H5'1 | C5' | H5'2 | 98.7° | 109.5° |
| O5' | PA | O1A | 101.0° | 109.5° |
| O5' | PA | O2A | 104.7° | 109.4° |
| O5' | PA | O3A | 105.5° | 109.5° |
| O1A | PA | O2A | 125.4° | 109.5° |
| O1A | PA | O3A | 111.0° | 109.5° |
| O2A | PA | O3A | 107.2° | 109.4° |
| PA | O2A | HOA2 | 104.7° | 106.9° |
| PA | O3A | PB | 128.5° | 106.8° |
| O3A | PB | O1B | 109.6° | 109.5° |
| O3A | PB | O2B | 102.0° | 109.5° |
| O3A | PB | CC | 92.9° | 109.5° |
| O1B | PB | O2B | 122.5° | 109.5° |
| O1B | PB | CC | 115.9° | 109.4° |
| O2B | PB | CC | 108.8° | 109.5° |
| PB | O2B | HOB2 | 102.0° | 106.8° |
| PB | CC | PG | 126.5° | 109.5° |
| PB | CC | HCC1 | 106.2° | 109.5° |
| PB | CC | HCC2 | 106.2° | 109.4° |
| PG | CC | HCC1 | 106.3° | 109.5° |
| PG | CC | HCC2 | 106.3° | 109.5° |
| CC | PG | O1G | 110.6° | 109.5° |
| CC | PG | O2G | 104.3° | 109.5° |
| CC | PG | O3G | 101.5° | 109.5° |
| HCC1 | CC | HCC2 | 103.3° | 109.5° |
| O1G | PG | O2G | 117.2° | 109.4° |
| O1G | PG | O3G | 111.4° | 109.5° |
| O2G | PG | O3G | 110.5° | 109.4° |
| PG | O2G | HOG2 | 104.3° | 106.9° |
| PG | O3G | HOG3 | 101.5° | 106.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 179.1° | 179.7° |
| N1 | C2 | O2 | N3 | 179.9° | 179.5° |
| N1 | C2 | N3 | C4 | 0.3° | 0.6° |
| N1 | C2 | N3 | HN3 | 179.7° | 179.8° |
| C2 | N1 | C6 | C5 | 0.8° | 0.3° |
| C2 | N1 | C6 | H6 | 179.2° | 179.8° |
| C2 | N1 | C1' | C2' | 112.9° | 60.3° |
| C2 | N1 | C1' | O4' | 125.3° | 55.1° |
| C2 | N1 | C1' | H1' | 4.4° | 177.4° |
| C6 | N1 | C2 | O2 | 179.5° | 180.0° |
| C6 | N1 | C2 | N3 | 0.7° | 0.6° |
| N1 | C6 | C5 | C4 | 0.5° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 179.6° | 179.9° |
| C6 | N1 | C1' | C2' | 65.5° | 120.0° |
| C6 | N1 | C1' | O4' | 56.3° | 124.6° |
| C6 | N1 | C1' | H1' | 177.1° | 2.2° |
| C1' | N1 | C2 | O2 | 1.2° | 0.3° |
| C1' | N1 | C2 | N3 | 178.9° | 179.8° |
| C1' | N1 | C6 | C5 | 179.9° | 179.9° |
| C1' | N1 | C6 | H6 | 0.1° | 0.1° |
| N1 | C1' | C2' | O4' | 120.7° | 119.0° |
| N1 | C1' | C2' | H1' | 118.5° | 122.3° |
| N1 | C1' | O4' | H1' | 118.7° | 122.4° |
| N1 | C1' | C2' | C3' | 117.3° | 142.9° |
| N1 | C1' | C2' | H2'1 | 117.5° | 24.3° |
| N1 | C1' | C2' | H2'2 | 8.0° | 98.3° |
| N1 | C1' | O4' | C4' | 121.9° | 159.3° |
| O2 | C2 | N3 | C4 | 179.8° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.3° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 179.5° | 179.7° |
| C2 | N3 | C4 | C5 | 0.0° | 0.3° |
| N3 | C4 | O4 | C5 | 179.5° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| N3 | C4 | C5 | H5 | 180.0° | 179.9° |
| HN3 | N3 | C4 | O4 | 0.5° | 0.0° |
| HN3 | N3 | C4 | C5 | 180.0° | 179.9° |
| O4 | C4 | C5 | C6 | 179.5° | 180.0° |
| O4 | C4 | C5 | H5 | 0.5° | 0.1° |
| C4 | C5 | C6 | H5 | 179.9° | 179.9° |
| C4 | C5 | C6 | H6 | 179.5° | 179.9° |
| H5 | C5 | C6 | H6 | 0.4° | 0.0° |
| C2' | C1' | O4' | H1' | 117.5° | 118.7° |
| C1' | C2' | C3' | H2'1 | 125.2° | 118.6° |
| C1' | C2' | C3' | H2'2 | 125.3° | 118.8° |
| C1' | C2' | H2'1 | H2'2 | 119.3° | 122.6° |
| C1' | C2' | C3' | O3' | 139.1° | 118.7° |
| C1' | C2' | C3' | C4' | 3.4° | 0.1° |
| C1' | C2' | C3' | H3' | 107.6° | 118.7° |
| C2' | C1' | O4' | C4' | 1.9° | 40.4° |
| O4' | C1' | C2' | C3' | 3.5° | 23.9° |
| O4' | C1' | C2' | H2'1 | 121.8° | 94.7° |
| O4' | C1' | C2' | H2'2 | 128.8° | 142.7° |
| C1' | O4' | C4' | C3' | 0.4° | 40.3° |
| C1' | O4' | C4' | C5' | 119.2° | 159.5° |
| C1' | O4' | C4' | H4' | 118.3° | 78.4° |
| H1' | C1' | C2' | C3' | 124.3° | 94.8° |
| H1' | C1' | C2' | H2'1 | 1.0° | 146.5° |
| H1' | C1' | C2' | H2'2 | 110.4° | 23.9° |
| H1' | C1' | O4' | C4' | 119.4° | 78.4° |
| C3' | C2' | H2'1 | H2'2 | 119.3° | 122.7° |
| C2' | C3' | O3' | C4' | 117.6° | 114.8° |
| C2' | C3' | O3' | H3' | 132.9° | 122.6° |
| C2' | C3' | C4' | H3' | 132.8° | 118.7° |
| C2' | C3' | O3' | HO'3 | 180.0° | 63.3° |
| C2' | C3' | C4' | O4' | 2.5° | 23.8° |
| C2' | C3' | C4' | C5' | 115.4° | 142.8° |
| C2' | C3' | C4' | H4' | 121.5° | 94.9° |
| H2'1 | C2' | C3' | O3' | 13.9° | 122.7° |
| H2'1 | C2' | C3' | C4' | 121.8° | 118.6° |
| H2'1 | C2' | C3' | H3' | 127.2° | 0.1° |
| H2'2 | C2' | C3' | O3' | 95.6° | 0.1° |
| H2'2 | C2' | C3' | C4' | 128.7° | 118.8° |
| H2'2 | C2' | C3' | H3' | 17.7° | 122.5° |
| O3' | C3' | C4' | H3' | 111.5° | 122.6° |
| O3' | C3' | C4' | O4' | 118.2° | 142.5° |
| O3' | C3' | C4' | C5' | 128.8° | 98.5° |
| O3' | C3' | C4' | H4' | 5.8° | 23.8° |
| C4' | C3' | O3' | HO'3 | 62.4° | 178.1° |
| C3' | C4' | O4' | C5' | 118.9° | 119.2° |
| C3' | C4' | O4' | H4' | 118.7° | 118.7° |
| C3' | C4' | C5' | H4' | 118.8° | 122.4° |
| C3' | C4' | C5' | O5' | 102.1° | 176.9° |
| C3' | C4' | C5' | H5'1 | 23.2° | 63.1° |
| C3' | C4' | C5' | H5'2 | 132.6° | 56.9° |
| H3' | C3' | O3' | HO'3 | 47.1° | 59.3° |
| H3' | C3' | C4' | O4' | 130.3° | 94.9° |
| H3' | C3' | C4' | C5' | 17.3° | 24.1° |
| H3' | C3' | C4' | H4' | 105.8° | 146.4° |
| O4' | C4' | C5' | H4' | 123.5° | 122.1° |
| O4' | C4' | C5' | O5' | 140.2° | 61.4° |
| O4' | C4' | C5' | H5'1 | 94.5° | 178.6° |
| O4' | C4' | C5' | H5'2 | 14.9° | 58.6° |
| C4' | C5' | O5' | H5'1 | 125.3° | 120.1° |
| C4' | C5' | O5' | H5'2 | 125.2° | 119.9° |
| C4' | C5' | H5'1 | H5'2 | 117.6° | 120.0° |
| C4' | C5' | O5' | PA | 141.1° | 180.0° |
| H4' | C4' | C5' | O5' | 16.7° | 60.8° |
| H4' | C4' | C5' | H5'1 | 142.0° | 59.3° |
| H4' | C4' | C5' | H5'2 | 108.6° | 179.3° |
| O5' | C5' | H5'1 | H5'2 | 117.7° | 120.0° |
| C5' | O5' | PA | O1A | 177.8° | 60.0° |
| C5' | O5' | PA | O2A | 46.3° | 60.0° |
| C5' | O5' | PA | O3A | 66.6° | 179.9° |
| H5'1 | C5' | O5' | PA | 15.9° | 60.0° |
| H5'2 | C5' | O5' | PA | 93.6° | 60.0° |
| O5' | PA | O1A | O2A | 117.2° | 120.0° |
| O5' | PA | O1A | O3A | 111.5° | 120.0° |
| O5' | PA | O2A | O3A | 111.7° | 120.0° |
| O5' | PA | O2A | HOA2 | 180.0° | 60.0° |
| O5' | PA | O3A | PB | 70.3° | 180.0° |
| O1A | PA | O2A | O3A | 132.8° | 120.0° |
| O1A | PA | O2A | HOA2 | 64.6° | 180.0° |
| O1A | PA | O3A | PB | 38.3° | 60.0° |
| O2A | PA | O3A | PB | 178.5° | 60.0° |
| O3A | PA | O2A | HOA2 | 68.3° | 60.0° |
| PA | O3A | PB | O1B | 131.7° | 60.0° |
| PA | O3A | PB | O2B | 0.4° | 60.1° |
| PA | O3A | PB | CC | 109.5° | 180.0° |
| O3A | PB | O1B | O2B | 119.3° | 120.0° |
| O3A | PB | O1B | CC | 103.4° | 120.0° |
| O3A | PB | O2B | CC | 97.3° | 120.0° |
| O3A | PB | O2B | HOB2 | 180.0° | 60.0° |
| O3A | PB | CC | PG | 103.2° | 180.0° |
| O3A | PB | CC | HCC1 | 131.5° | 60.0° |
| O3A | PB | CC | HCC2 | 22.0° | 60.0° |
| O1B | PB | O2B | CC | 139.9° | 120.0° |
| O1B | PB | O2B | HOB2 | 57.1° | 180.0° |
| O1B | PB | CC | PG | 143.3° | 60.0° |
| O1B | PB | CC | HCC1 | 18.1° | 60.0° |
| O1B | PB | CC | HCC2 | 91.4° | 180.0° |
| O2B | PB | CC | PG | 0.5° | 60.0° |
| O2B | PB | CC | HCC1 | 124.8° | 180.0° |
| O2B | PB | CC | HCC2 | 125.8° | 60.0° |
| CC | PB | O2B | HOB2 | 82.8° | 60.0° |
| PB | CC | PG | HCC1 | 125.2° | 120.0° |
| PB | CC | PG | HCC2 | 125.3° | 120.0° |
| PB | CC | HCC1 | HCC2 | 111.5° | 119.9° |
| PB | CC | PG | O1G | 2.2° | 60.0° |
| PB | CC | PG | O2G | 124.6° | 180.0° |
| PB | CC | PG | O3G | 120.5° | 60.0° |
| PG | CC | HCC1 | HCC2 | 111.6° | 120.1° |
| CC | PG | O1G | O2G | 119.3° | 120.0° |
| CC | PG | O1G | O3G | 112.1° | 120.0° |
| CC | PG | O2G | O3G | 108.4° | 120.0° |
| CC | PG | O2G | HOG2 | 180.0° | 179.9° |
| CC | PG | O3G | HOG3 | 180.0° | 60.0° |
| HCC1 | CC | PG | O1G | 127.4° | 60.0° |
| HCC1 | CC | PG | O2G | 0.6° | 60.0° |
| HCC1 | CC | PG | O3G | 114.3° | 180.0° |
| HCC2 | CC | PG | O1G | 123.1° | 180.0° |
| HCC2 | CC | PG | O2G | 110.1° | 60.0° |
| HCC2 | CC | PG | O3G | 4.8° | 59.9° |
| O1G | PG | O2G | O3G | 129.0° | 120.0° |
| O1G | PG | O2G | HOG2 | 57.4° | 60.0° |
| O1G | PG | O3G | HOG3 | 62.3° | 180.0° |
| O2G | PG | O3G | HOG3 | 69.8° | 60.0° |
| O3G | PG | O2G | HOG2 | 71.7° | 60.0° |
