UCL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	doub	1.48Å	1.59Å
P	O1P	sing	1.61Å	1.48Å
P	O2P	sing	1.61Å	1.51Å
P	O5'	sing	1.61Å	1.61Å
O1P	HO1P	sing	0.97Å	0.95Å
O2P	HO2P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.46Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.45Å	1.42Å
C4'	C3'	sing	1.54Å	1.57Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.49Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	C2'	sing	1.54Å	1.51Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	C1'	sing	1.55Å	1.49Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C1'	N1	sing	1.47Å	1.42Å
C1'	H1'	sing	1.09Å	1.10Å
N1	C2	sing	1.35Å	1.43Å
N1	C6	sing	1.37Å	1.30Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.35Å	1.37Å
N3	C4	sing	1.35Å	1.37Å
N3	HN3	sing	0.97Å	1.00Å
C4	O4	doub	1.22Å	1.22Å
C4	C5	sing	1.42Å	1.42Å
C5	C6	doub	1.35Å	1.31Å
C5	CL	sing	1.74Å	1.75Å
C6	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3P	P	O1P	105.5°	109.5°
O3P	P	O2P	108.1°	109.4°
O3P	P	O5'	105.0°	109.5°
O1P	P	O2P	114.5°	109.4°
O1P	P	O5'	112.3°	109.5°
P	O1P	HO1P	109.5°	106.8°
O2P	P	O5'	110.7°	109.5°
P	O2P	HO2P	109.5°	106.8°
P	O5'	C5'	121.5°	106.8°
O5'	C5'	C4'	108.0°	109.5°
O5'	C5'	H5'1	110.0°	109.4°
O5'	C5'	H5'2	110.3°	109.5°
C4'	C5'	H5'1	110.0°	109.5°
C4'	C5'	H5'2	110.3°	109.5°
C5'	C4'	O4'	113.6°	110.4°
C5'	C4'	C3'	112.2°	110.6°
C5'	C4'	H4'	102.5°	110.4°
H5'1	C5'	H5'2	108.3°	109.5°
O4'	C4'	C3'	101.3°	104.7°
O4'	C4'	H4'	113.2°	110.4°
C4'	O4'	C1'	114.3°	105.3°
C3'	C4'	H4'	114.5°	110.3°
C4'	C3'	O3'	109.0°	110.5°
C4'	C3'	C2'	95.2°	104.2°
C4'	C3'	H3'	122.8°	110.6°
O4'	C1'	C2'	94.5°	104.8°
O4'	C1'	N1	102.4°	110.5°
O4'	C1'	H1'	124.0°	110.4°
O3'	C3'	C2'	120.1°	110.5°
O3'	C3'	H3'	99.3°	110.4°
C3'	O3'	HO3'	109.5°	106.8°
C2'	C3'	H3'	112.2°	110.5°
C3'	C2'	C1'	103.8°	104.1°
C3'	C2'	H2'1	111.4°	110.5°
C3'	C2'	H2'2	112.6°	110.6°
C1'	C2'	H2'1	111.4°	110.5°
C1'	C2'	H2'2	112.6°	110.5°
C2'	C1'	N1	114.0°	110.4°
C2'	C1'	H1'	114.0°	110.4°
H2'1	C2'	H2'2	105.2°	110.5°
N1	C1'	H1'	107.5°	110.3°
C1'	N1	C2	114.6°	119.7°
C1'	N1	C6	135.5°	119.7°
C2	N1	C6	109.9°	120.6°
N1	C2	O2	127.4°	119.5°
N1	C2	N3	119.3°	120.9°
N1	C6	C5	135.7°	119.7°
N1	C6	H6	112.2°	120.1°
O2	C2	N3	113.2°	119.5°
C2	N3	C4	125.7°	120.3°
C2	N3	HN3	117.2°	119.8°
C4	N3	HN3	117.2°	119.9°
N3	C4	O4	123.3°	120.3°
N3	C4	C5	114.0°	119.4°
O4	C4	C5	122.7°	120.4°
C4	C5	C6	115.4°	119.1°
C4	C5	CL	117.8°	120.4°
C6	C5	CL	126.8°	120.5°
C5	C6	H6	112.2°	120.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O1P	O2P	118.7°	120.0°
O3P	P	O1P	O5'	113.9°	120.0°
O3P	P	O2P	O5'	114.5°	120.0°
O3P	P	O1P	HO1P	25.6°	180.0°
O3P	P	O2P	HO2P	161.2°	60.0°
O3P	P	O5'	C5'	91.0°	55.1°
O1P	P	O2P	O5'	128.2°	120.0°
O1P	P	O2P	HO2P	44.0°	60.0°
O1P	P	O5'	C5'	23.1°	65.0°
O2P	P	O1P	HO1P	93.1°	60.0°
O2P	P	O5'	C5'	152.6°	175.0°
O5'	P	O1P	HO1P	139.4°	60.0°
O5'	P	O2P	HO2P	84.3°	180.0°
P	O5'	C5'	C4'	148.8°	180.0°
P	O5'	C5'	H5'1	91.2°	60.1°
P	O5'	C5'	H5'2	28.2°	59.9°
O5'	C5'	C4'	H5'1	120.0°	119.9°
O5'	C5'	C4'	H5'2	120.6°	120.0°
O5'	C5'	H5'1	H5'2	120.6°	120.0°
O5'	C5'	C4'	O4'	78.7°	66.5°
O5'	C5'	C4'	C3'	35.5°	178.1°
O5'	C5'	C4'	H4'	158.9°	55.8°
C4'	C5'	H5'1	H5'2	120.6°	120.1°
C5'	C4'	O4'	C3'	120.5°	119.1°
C5'	C4'	O4'	H4'	116.4°	122.3°
C5'	C4'	C3'	H4'	116.3°	122.4°
C5'	C4'	O4'	C1'	109.9°	159.4°
C5'	C4'	C3'	O3'	152.4°	98.6°
C5'	C4'	C3'	C2'	83.4°	142.8°
C5'	C4'	C3'	H3'	37.3°	24.0°
H5'1	C5'	C4'	O4'	161.3°	173.6°
H5'1	C5'	C4'	C3'	84.5°	58.2°
H5'1	C5'	C4'	H4'	38.8°	64.1°
H5'2	C5'	C4'	O4'	41.9°	53.5°
H5'2	C5'	C4'	C3'	156.1°	61.9°
H5'2	C5'	C4'	H4'	80.6°	175.8°
O4'	C4'	C3'	H4'	122.2°	118.7°
O4'	C4'	C3'	O3'	86.2°	142.5°
O4'	C4'	C3'	C2'	38.1°	23.9°
O4'	C4'	C3'	H3'	158.7°	94.9°
C4'	O4'	C1'	C2'	22.0°	40.4°
C4'	O4'	C1'	N1	137.8°	159.3°
C4'	O4'	C1'	H1'	101.0°	78.4°
C3'	C4'	O4'	C1'	10.7°	40.4°
C4'	C3'	O3'	C2'	108.0°	114.8°
C4'	C3'	O3'	H3'	129.5°	122.6°
C4'	C3'	C2'	H3'	128.6°	118.8°
C4'	C3'	O3'	HO3'	58.5°	178.1°
C4'	C3'	C2'	C1'	55.4°	0.0°
C4'	C3'	C2'	H2'1	64.6°	118.6°
C4'	C3'	C2'	H2'2	177.5°	118.7°
H4'	C4'	O4'	C1'	133.7°	78.3°
H4'	C4'	C3'	O3'	36.0°	23.8°
H4'	C4'	C3'	C2'	160.3°	94.9°
H4'	C4'	C3'	H3'	79.1°	146.4°
O4'	C1'	C2'	C3'	47.9°	23.9°
O4'	C1'	C2'	N1	105.7°	119.0°
O4'	C1'	C2'	H1'	130.4°	118.9°
O4'	C1'	C2'	H2'1	72.1°	94.7°
O4'	C1'	C2'	H2'2	169.9°	142.7°
O4'	C1'	N1	H1'	131.9°	122.4°
O4'	C1'	N1	C2	100.0°	50.2°
O4'	C1'	N1	C6	80.1°	129.6°
O3'	C3'	C2'	H3'	115.9°	122.5°
O3'	C3'	C2'	C1'	60.1°	118.7°
O3'	C3'	C2'	H2'1	179.9°	122.7°
O3'	C3'	C2'	H2'2	62.0°	0.0°
C2'	C3'	O3'	HO3'	49.6°	63.3°
C3'	C2'	C1'	H2'1	120.0°	118.6°
C3'	C2'	C1'	H2'2	122.1°	118.7°
C3'	C2'	H2'1	H2'2	122.3°	122.7°
C3'	C2'	C1'	N1	153.6°	142.9°
C3'	C2'	C1'	H1'	82.6°	94.9°
H3'	C3'	O3'	HO3'	172.0°	59.3°
H3'	C3'	C2'	C1'	176.0°	118.8°
H3'	C3'	C2'	H2'1	64.0°	0.2°
H3'	C3'	C2'	H2'2	53.9°	122.5°
C1'	C2'	H2'1	H2'2	122.3°	122.6°
C2'	C1'	N1	H1'	127.3°	122.2°
C2'	C1'	N1	C2	159.2°	65.3°
C2'	C1'	N1	C6	20.7°	115.0°
H2'1	C2'	C1'	N1	33.6°	24.3°
H2'1	C2'	C1'	H1'	157.4°	146.4°
H2'2	C2'	C1'	N1	84.4°	98.4°
H2'2	C2'	C1'	H1'	39.5°	23.8°
C1'	N1	C2	C6	179.9°	179.7°
C1'	N1	C2	O2	1.4°	0.3°
C1'	N1	C2	N3	178.7°	179.8°
C1'	N1	C6	C5	179.1°	180.0°
C1'	N1	C6	H6	1.0°	0.1°
H1'	C1'	N1	C2	31.9°	172.5°
H1'	C1'	N1	C6	148.0°	7.2°
N1	C2	O2	N3	177.4°	179.5°
N1	C2	N3	C4	2.2°	0.5°
N1	C2	N3	HN3	177.8°	179.8°
C2	N1	C6	C5	1.1°	0.2°
C2	N1	C6	H6	178.9°	179.8°
C6	N1	C2	O2	178.5°	180.0°
C6	N1	C2	N3	1.2°	0.5°
N1	C6	C5	C4	2.4°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	CL	176.6°	180.0°
O2	C2	N3	C4	179.8°	180.0°
O2	C2	N3	HN3	0.2°	0.3°
C2	N3	C4	HN3	180.0°	179.7°
C2	N3	C4	O4	179.6°	179.7°
C2	N3	C4	C5	0.8°	0.2°
N3	C4	O4	C5	179.5°	179.9°
N3	C4	C5	C6	1.2°	0.0°
N3	C4	C5	CL	177.8°	180.0°
HN3	N3	C4	O4	0.4°	0.0°
HN3	N3	C4	C5	179.2°	179.9°
O4	C4	C5	C6	178.3°	180.0°
O4	C4	C5	CL	2.6°	0.1°
C4	C5	C6	CL	178.9°	180.0°
C4	C5	C6	H6	177.6°	180.0°
CL	C5	C6	H6	3.5°	0.0°

Definition date:	2006-09-07
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB