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Summary Geometry Related PDB entries

UCJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	P1	sing	1.82Å	1.65Å
P1	O2	sing	1.61Å	1.61Å
P1	O1	doub	1.48Å	1.46Å
O2	C2	sing	1.43Å	1.42Å
C4	C2	sing	1.53Å	1.52Å
C2	C3	sing	1.53Å	1.52Å
P1	O3	sing	1.61Å	1.40Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C4	H5	sing	1.09Å	1.10Å
C4	H6	sing	1.09Å	1.10Å
C4	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.09Å	1.10Å
C3	H9	sing	1.09Å	1.10Å
C3	H10	sing	1.09Å	1.10Å
O3	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	P1	O2	102.6°	109.5°
C1	P1	O1	115.9°	109.5°
C1	P1	O3	90.5°	109.4°
P1	C1	H1	109.5°	109.5°
P1	C1	H2	109.5°	109.5°
P1	C1	H3	109.4°	109.5°
O2	P1	O1	114.1°	109.5°
P1	O2	C2	120.2°	123.0°
O2	P1	O3	107.0°	109.4°
O1	P1	O3	122.9°	109.5°
O2	C2	C4	109.7°	109.5°
O2	C2	C3	107.2°	109.5°
O2	C2	H4	110.8°	109.5°
C4	C2	C3	110.4°	109.5°
C4	C2	H4	109.4°	109.4°
C2	C4	H5	109.5°	109.5°
C2	C4	H6	109.5°	109.5°
C2	C4	H7	109.5°	109.5°
C3	C2	H4	109.3°	109.5°
C2	C3	H8	109.5°	109.4°
C2	C3	H9	109.4°	109.5°
C2	C3	H10	109.5°	109.4°
P1	O3	H11	109.5°	114.0°
H1	C1	H2	109.5°	109.5°
H1	C1	H3	109.5°	109.4°
H2	C1	H3	109.5°	109.5°
H5	C4	H6	109.4°	109.5°
H5	C4	H7	109.5°	109.4°
H6	C4	H7	109.5°	109.5°
H8	C3	H9	109.5°	109.5°
H8	C3	H10	109.5°	109.5°
H9	C3	H10	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	P1	O2	O1	126.2°	120.0°
C1	P1	O2	O3	94.5°	119.9°
C1	P1	O1	O3	109.1°	120.0°
C1	P1	O2	C2	122.4°	175.0°
P1	C1	H1	H2	120.0°	120.0°
P1	C1	H1	H3	120.0°	120.0°
P1	C1	H2	H3	119.9°	120.0°
C1	P1	O3	H11	121.8°	60.0°
O2	P1	O1	O3	132.0°	120.0°
P1	O2	C2	C4	71.4°	119.9°
P1	O2	C2	C3	168.7°	120.1°
O2	P1	C1	H1	180.0°	60.0°
O2	P1	C1	H2	60.0°	179.9°
O2	P1	C1	H3	60.0°	59.9°
P1	O2	C2	H4	49.5°	0.0°
O2	P1	O3	H11	134.8°	180.0°
O1	P1	O2	C2	3.8°	55.0°
O1	P1	C1	H1	55.0°	60.0°
O1	P1	C1	H2	175.0°	60.0°
O1	P1	C1	H3	65.0°	180.0°
O1	P1	O3	H11	0.0°	60.0°
O2	C2	C4	C3	117.9°	120.0°
O2	C2	C4	H4	121.8°	120.0°
O2	C2	C3	H4	120.2°	120.0°
C2	O2	P1	O3	143.2°	65.1°
O2	C2	C4	H5	180.0°	180.0°
O2	C2	C4	H6	60.0°	60.0°
O2	C2	C4	H7	60.0°	60.0°
O2	C2	C3	H8	180.0°	60.0°
O2	C2	C3	H9	60.0°	180.0°
O2	C2	C3	H10	60.0°	60.0°
C4	C2	C3	H4	120.4°	119.9°
C2	C4	H5	H6	120.0°	120.0°
C2	C4	H5	H7	120.0°	120.0°
C2	C4	H6	H7	120.0°	120.0°
C4	C2	C3	H8	60.6°	180.0°
C4	C2	C3	H9	59.4°	60.0°
C4	C2	C3	H10	179.4°	60.0°
C3	C2	C4	H5	62.1°	60.0°
C3	C2	C4	H6	177.9°	180.0°
C3	C2	C4	H7	57.9°	60.0°
C2	C3	H8	H9	120.0°	120.0°
C2	C3	H8	H10	120.0°	119.9°
C2	C3	H9	H10	120.0°	120.0°
O3	P1	C1	H1	72.5°	179.9°
O3	P1	C1	H2	47.5°	60.0°
O3	P1	C1	H3	167.5°	60.0°
H1	C1	H2	H3	120.0°	120.0°
H4	C2	C4	H5	58.2°	60.0°
H4	C2	C4	H6	61.7°	60.0°
H4	C2	C4	H7	178.2°	179.9°
H4	C2	C3	H8	59.8°	60.1°
H4	C2	C3	H9	179.8°	60.0°
H4	C2	C3	H10	60.2°	180.0°
H5	C4	H6	H7	120.0°	120.0°
H8	C3	H9	H10	120.0°	120.1°

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