UC5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | C4 | doub | 1.22Å | 1.24Å | |
| C4 | C5 | sing | 1.42Å | 1.41Å | |
| C4 | N3 | sing | 1.35Å | 1.37Å | |
| C5 | C6 | doub | 1.35Å | 1.40Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | N1 | sing | 1.37Å | 1.41Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | C2 | sing | 1.35Å | 1.41Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C2 | O2 | doub | 1.22Å | 1.26Å | |
| C2 | N1 | sing | 1.35Å | 1.38Å | |
| N1 | C1' | sing | 1.46Å | 1.48Å | |
| C1' | C2' | sing | 1.54Å | 1.55Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.54Å | 1.50Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O4' | C4' | sing | 1.45Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.38Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | PA | sing | 1.61Å | 1.62Å | |
| PA | O1A | doub | 1.48Å | 1.51Å | |
| PA | O2A | sing | 1.61Å | 1.52Å | |
| PA | C3A | sing | 1.82Å | 1.82Å | |
| O2A | HO2A | sing | 0.97Å | 0.95Å | |
| C3A | PB | sing | 1.82Å | 1.80Å | |
| C3A | H3A1 | sing | 1.09Å | 1.10Å | |
| C3A | H3A2 | sing | 1.09Å | 1.10Å | |
| PB | O1B | sing | 1.61Å | 1.51Å | |
| PB | O2B | sing | 1.61Å | 1.47Å | |
| PB | O3B | doub | 1.48Å | 1.61Å | |
| O1B | HO1B | sing | 0.97Å | 0.95Å | |
| O2B | HO2B | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | C4 | C5 | 122.1° | 120.3° |
| O4 | C4 | N3 | 119.2° | 120.2° |
| C5 | C4 | N3 | 118.7° | 119.4° |
| C4 | C5 | C6 | 119.7° | 119.1° |
| C4 | C5 | H5 | 120.1° | 120.5° |
| C4 | N3 | C2 | 122.7° | 120.2° |
| C4 | N3 | HN3 | 118.7° | 120.0° |
| C6 | C5 | H5 | 120.2° | 120.5° |
| C5 | C6 | N1 | 120.2° | 119.7° |
| C5 | C6 | H6 | 119.9° | 120.1° |
| N1 | C6 | H6 | 119.9° | 120.1° |
| C6 | N1 | C2 | 120.3° | 120.6° |
| C6 | N1 | C1' | 116.2° | 119.7° |
| C2 | N3 | HN3 | 118.7° | 119.8° |
| N3 | C2 | O2 | 120.2° | 119.5° |
| N3 | C2 | N1 | 118.3° | 121.0° |
| O2 | C2 | N1 | 121.5° | 119.5° |
| C2 | N1 | C1' | 123.4° | 119.7° |
| N1 | C1' | C2' | 108.7° | 110.4° |
| N1 | C1' | O4' | 112.2° | 110.5° |
| N1 | C1' | H1' | 107.1° | 110.3° |
| C2' | C1' | O4' | 106.0° | 104.8° |
| C2' | C1' | H1' | 113.2° | 110.4° |
| C1' | C2' | C3' | 106.0° | 104.1° |
| C1' | C2' | H2'1 | 111.4° | 110.5° |
| C1' | C2' | H2'2 | 110.6° | 110.5° |
| O4' | C1' | H1' | 109.7° | 110.3° |
| C1' | O4' | C4' | 109.7° | 105.4° |
| C3' | C2' | H2'1 | 111.4° | 110.5° |
| C3' | C2' | H2'2 | 110.6° | 110.5° |
| C2' | C3' | O3' | 116.2° | 110.5° |
| C2' | C3' | C4' | 102.7° | 104.2° |
| C2' | C3' | H3' | 111.7° | 110.6° |
| H2'1 | C2' | H2'2 | 106.9° | 110.5° |
| O3' | C3' | C4' | 114.8° | 110.5° |
| O3' | C3' | H3' | 98.7° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C4' | C3' | H3' | 113.2° | 110.5° |
| C3' | C4' | O4' | 107.9° | 104.7° |
| C3' | C4' | C5' | 107.3° | 110.7° |
| C3' | C4' | H4' | 112.6° | 110.3° |
| O4' | C4' | C5' | 111.4° | 110.4° |
| O4' | C4' | H4' | 108.6° | 110.4° |
| C5' | C4' | H4' | 109.2° | 110.3° |
| C4' | C5' | O5' | 108.4° | 109.5° |
| C4' | C5' | H5'1 | 110.1° | 109.5° |
| C4' | C5' | H5'2 | 109.8° | 109.5° |
| O5' | C5' | H5'1 | 110.1° | 109.4° |
| O5' | C5' | H5'2 | 109.8° | 109.5° |
| C5' | O5' | PA | 116.5° | 106.8° |
| H5'1 | C5' | H5'2 | 108.6° | 109.5° |
| O5' | PA | O1A | 103.4° | 109.5° |
| O5' | PA | O2A | 112.6° | 109.5° |
| O5' | PA | C3A | 101.8° | 109.5° |
| O1A | PA | O2A | 115.8° | 109.5° |
| O1A | PA | C3A | 114.1° | 109.5° |
| O2A | PA | C3A | 108.2° | 109.4° |
| PA | O2A | HO2A | 109.5° | 106.8° |
| PA | C3A | PB | 118.6° | 109.5° |
| PA | C3A | H3A1 | 104.4° | 109.5° |
| PA | C3A | H3A2 | 106.5° | 109.5° |
| PB | C3A | H3A1 | 104.4° | 109.4° |
| PB | C3A | H3A2 | 106.6° | 109.4° |
| C3A | PB | O1B | 107.6° | 109.5° |
| C3A | PB | O2B | 115.0° | 109.5° |
| C3A | PB | O3B | 110.4° | 109.5° |
| H3A1 | C3A | H3A2 | 116.9° | 109.5° |
| O1B | PB | O2B | 107.3° | 109.5° |
| O1B | PB | O3B | 111.3° | 109.5° |
| PB | O1B | HO1B | 109.5° | 106.8° |
| O2B | PB | O3B | 105.3° | 109.5° |
| PB | O2B | HO2B | 109.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | C4 | C5 | N3 | 179.4° | 180.0° |
| O4 | C4 | C5 | C6 | 179.7° | 180.0° |
| O4 | C4 | C5 | H5 | 0.3° | 0.0° |
| O4 | C4 | N3 | C2 | 178.0° | 179.7° |
| O4 | C4 | N3 | HN3 | 2.0° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | N1 | 0.0° | 0.1° |
| C4 | C5 | C6 | H6 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 2.6° | 0.3° |
| C5 | C4 | N3 | HN3 | 177.4° | 180.0° |
| N3 | C4 | C5 | C6 | 0.9° | 0.1° |
| N3 | C4 | C5 | H5 | 179.1° | 180.0° |
| C4 | N3 | C2 | HN3 | 180.0° | 179.8° |
| C4 | N3 | C2 | O2 | 176.7° | 180.0° |
| C4 | N3 | C2 | N1 | 3.4° | 0.5° |
| C5 | C6 | N1 | H6 | 180.0° | 179.9° |
| C5 | C6 | N1 | C2 | 0.8° | 0.3° |
| C5 | C6 | N1 | C1' | 177.6° | 180.0° |
| H5 | C5 | C6 | N1 | 180.0° | 180.0° |
| H5 | C5 | C6 | H6 | 0.0° | 0.1° |
| C6 | N1 | C2 | N3 | 2.4° | 0.5° |
| C6 | N1 | C2 | O2 | 177.7° | 180.0° |
| C6 | N1 | C2 | C1' | 176.5° | 179.7° |
| C6 | N1 | C1' | C2' | 62.7° | 115.0° |
| C6 | N1 | C1' | O4' | 54.2° | 129.5° |
| C6 | N1 | C1' | H1' | 174.7° | 7.2° |
| H6 | C6 | N1 | C2 | 179.2° | 179.8° |
| H6 | C6 | N1 | C1' | 2.4° | 0.1° |
| N3 | C2 | O2 | N1 | 179.9° | 179.5° |
| N3 | C2 | N1 | C1' | 179.0° | 179.7° |
| HN3 | N3 | C2 | O2 | 3.3° | 0.3° |
| HN3 | N3 | C2 | N1 | 176.6° | 179.7° |
| O2 | C2 | N1 | C1' | 1.1° | 0.3° |
| C2 | N1 | C1' | C2' | 114.0° | 65.2° |
| C2 | N1 | C1' | O4' | 129.1° | 50.2° |
| C2 | N1 | C1' | H1' | 8.6° | 172.5° |
| N1 | C1' | C2' | O4' | 120.8° | 118.9° |
| N1 | C1' | C2' | H1' | 118.9° | 122.3° |
| N1 | C1' | O4' | H1' | 118.9° | 122.3° |
| N1 | C1' | C2' | C3' | 111.5° | 142.9° |
| N1 | C1' | C2' | H2'1 | 9.8° | 24.2° |
| N1 | C1' | C2' | H2'2 | 128.5° | 98.4° |
| N1 | C1' | O4' | C4' | 127.3° | 159.3° |
| C2' | C1' | O4' | H1' | 122.5° | 118.8° |
| C1' | C2' | C3' | H2'1 | 121.3° | 118.6° |
| C1' | C2' | C3' | H2'2 | 120.0° | 118.7° |
| C1' | C2' | H2'1 | H2'2 | 120.9° | 122.7° |
| C1' | C2' | C3' | O3' | 148.4° | 118.7° |
| C1' | C2' | C3' | C4' | 22.2° | 0.0° |
| C1' | C2' | C3' | H3' | 99.5° | 118.8° |
| C2' | C1' | O4' | C4' | 8.8° | 40.4° |
| O4' | C1' | C2' | C3' | 9.3° | 24.0° |
| O4' | C1' | C2' | H2'1 | 130.6° | 94.7° |
| O4' | C1' | C2' | H2'2 | 110.7° | 142.6° |
| C1' | O4' | C4' | C3' | 23.7° | 40.3° |
| C1' | O4' | C4' | C5' | 141.1° | 159.4° |
| C1' | O4' | C4' | H4' | 98.6° | 78.4° |
| H1' | C1' | C2' | C3' | 129.6° | 94.8° |
| H1' | C1' | C2' | H2'1 | 109.1° | 146.5° |
| H1' | C1' | C2' | H2'2 | 9.6° | 23.8° |
| H1' | C1' | O4' | C4' | 113.8° | 78.4° |
| C3' | C2' | H2'1 | H2'2 | 120.9° | 122.7° |
| C2' | C3' | O3' | C4' | 119.9° | 114.8° |
| C2' | C3' | O3' | H3' | 119.5° | 122.6° |
| C2' | C3' | C4' | H3' | 120.6° | 118.8° |
| C2' | C3' | O3' | HO3' | 9.3° | 63.3° |
| C2' | C3' | C4' | O4' | 28.3° | 23.8° |
| C2' | C3' | C4' | C5' | 148.4° | 142.7° |
| C2' | C3' | C4' | H4' | 91.5° | 94.9° |
| H2'1 | C2' | C3' | O3' | 90.3° | 122.7° |
| H2'1 | C2' | C3' | C4' | 143.5° | 118.6° |
| H2'1 | C2' | C3' | H3' | 21.8° | 0.1° |
| H2'2 | C2' | C3' | O3' | 28.4° | 0.0° |
| H2'2 | C2' | C3' | C4' | 97.8° | 118.7° |
| H2'2 | C2' | C3' | H3' | 140.5° | 122.6° |
| O3' | C3' | C4' | H3' | 112.3° | 122.5° |
| O3' | C3' | C4' | O4' | 155.4° | 142.5° |
| O3' | C3' | C4' | C5' | 84.5° | 98.6° |
| O3' | C3' | C4' | H4' | 35.6° | 23.8° |
| C4' | C3' | O3' | HO3' | 129.2° | 178.1° |
| C3' | C4' | O4' | C5' | 117.4° | 119.1° |
| C3' | C4' | O4' | H4' | 122.3° | 118.7° |
| C3' | C4' | C5' | H4' | 122.3° | 122.4° |
| C3' | C4' | C5' | O5' | 176.1° | 178.2° |
| C3' | C4' | C5' | H5'1 | 63.4° | 58.2° |
| C3' | C4' | C5' | H5'2 | 56.1° | 61.8° |
| H3' | C3' | O3' | HO3' | 110.1° | 59.3° |
| H3' | C3' | C4' | O4' | 92.3° | 94.9° |
| H3' | C3' | C4' | C5' | 27.8° | 24.0° |
| H3' | C3' | C4' | H4' | 147.9° | 146.3° |
| O4' | C4' | C5' | H4' | 119.9° | 122.2° |
| O4' | C4' | C5' | O5' | 66.1° | 66.5° |
| O4' | C4' | C5' | H5'1 | 54.4° | 173.6° |
| O4' | C4' | C5' | H5'2 | 173.9° | 53.6° |
| C4' | C5' | O5' | H5'1 | 120.5° | 120.0° |
| C4' | C5' | O5' | H5'2 | 120.0° | 120.0° |
| C4' | C5' | H5'1 | H5'2 | 120.3° | 120.0° |
| C4' | C5' | O5' | PA | 173.7° | 180.0° |
| H4' | C4' | C5' | O5' | 53.8° | 55.8° |
| H4' | C4' | C5' | H5'1 | 174.3° | 64.2° |
| H4' | C4' | C5' | H5'2 | 66.2° | 175.8° |
| O5' | C5' | H5'1 | H5'2 | 120.3° | 120.0° |
| C5' | O5' | PA | O1A | 161.7° | 55.0° |
| C5' | O5' | PA | O2A | 36.0° | 65.0° |
| C5' | O5' | PA | C3A | 79.6° | 175.0° |
| H5'1 | C5' | O5' | PA | 65.8° | 60.0° |
| H5'2 | C5' | O5' | PA | 53.7° | 60.0° |
| O5' | PA | O1A | O2A | 123.6° | 120.0° |
| O5' | PA | O1A | C3A | 109.7° | 120.0° |
| O5' | PA | O2A | C3A | 111.7° | 120.0° |
| O5' | PA | O2A | HO2A | 1.6° | 59.9° |
| O5' | PA | C3A | PB | 161.9° | 180.0° |
| O5' | PA | C3A | H3A1 | 46.3° | 60.0° |
| O5' | PA | C3A | H3A2 | 78.1° | 60.1° |
| O1A | PA | O2A | C3A | 129.6° | 120.0° |
| O1A | PA | O2A | HO2A | 120.2° | 180.0° |
| O1A | PA | C3A | PB | 51.2° | 60.0° |
| O1A | PA | C3A | H3A1 | 64.4° | 180.0° |
| O1A | PA | C3A | H3A2 | 171.3° | 60.0° |
| O2A | PA | C3A | PB | 79.3° | 60.0° |
| O2A | PA | C3A | H3A1 | 165.1° | 60.0° |
| O2A | PA | C3A | H3A2 | 40.7° | 179.9° |
| C3A | PA | O2A | HO2A | 110.2° | 60.0° |
| PA | C3A | PB | H3A1 | 115.7° | 120.0° |
| PA | C3A | PB | H3A2 | 120.0° | 120.0° |
| PA | C3A | H3A1 | H3A2 | 117.4° | 120.1° |
| PA | C3A | PB | O1B | 45.4° | 60.0° |
| PA | C3A | PB | O2B | 164.9° | 180.0° |
| PA | C3A | PB | O3B | 76.2° | 60.0° |
| PB | C3A | H3A1 | H3A2 | 117.4° | 120.0° |
| C3A | PB | O1B | O2B | 124.3° | 120.0° |
| C3A | PB | O1B | O3B | 121.1° | 120.0° |
| C3A | PB | O2B | O3B | 121.8° | 120.0° |
| C3A | PB | O1B | HO1B | 7.6° | 60.0° |
| C3A | PB | O2B | HO2B | 118.2° | 180.0° |
| H3A1 | C3A | PB | O1B | 161.1° | 60.0° |
| H3A1 | C3A | PB | O2B | 79.4° | 60.0° |
| H3A1 | C3A | PB | O3B | 39.5° | 180.0° |
| H3A2 | C3A | PB | O1B | 74.6° | 180.0° |
| H3A2 | C3A | PB | O2B | 44.9° | 60.0° |
| H3A2 | C3A | PB | O3B | 163.8° | 60.0° |
| O1B | PB | O2B | O3B | 118.6° | 120.0° |
| O1B | PB | O2B | HO2B | 122.2° | 59.9° |
| O2B | PB | O1B | HO1B | 116.7° | 60.0° |
| O3B | PB | O1B | HO1B | 128.7° | 180.0° |
| O3B | PB | O2B | HO2B | 3.6° | 60.1° |
