Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

UBP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6N1sing1.37Å1.40Å
N1C7sing1.47Å1.48Å
N1C2sing1.35Å1.43Å
N3C2sing1.35Å1.42Å
C2O2doub1.22Å1.27Å
C4N3sing1.35Å1.44Å
N3C1sing1.47Å1.50Å
C5C4sing1.42Å1.37Å
O4C4doub1.22Å1.25Å
C5C6doub1.35Å1.37Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C7C8sing1.53Å1.54Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
N8C8sing1.47Å1.54Å
C8C9sing1.51Å1.53Å
C8H8sing1.09Å1.10Å
N8HN8sing1.01Å1.00Å
N8HN8Asing1.01Å1.00Å
O91C9doub1.21Å1.23Å
C9O92sing1.34Å1.19Å
O92HO92sing0.97Å0.95Å
C3C1sing1.53Å1.52Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C3C10sing1.51Å1.50Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C10O1doub1.21Å1.22Å
C10O3sing1.34Å1.22Å
O3HO3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N1C7121.0°119.7°
C6N1C2117.4°120.7°
N1C6C5123.5°119.7°
N1C6H6118.3°120.2°
C7N1C2121.6°119.7°
N1C7C8110.5°109.5°
N1C7H7109.1°109.4°
N1C7H7A108.9°109.4°
N1C2N3121.9°120.9°
N1C2O2118.2°119.6°
N3C2O2119.9°119.5°
C2N3C4114.9°120.3°
C2N3C1113.6°119.8°
C4N3C1131.5°119.9°
N3C4C5124.0°119.4°
N3C4O4120.0°120.3°
N3C1C3124.4°109.5°
N3C1H1104.8°109.4°
N3C1H1A101.2°109.4°
C5C4O4116.0°120.3°
C4C5C6118.3°119.1°
C4C5H5120.8°120.4°
C6C5H5120.9°120.5°
C5C6H6118.2°120.1°
C8C7H7109.1°109.5°
C8C7H7A108.9°109.5°
C7C8N8107.2°109.5°
C7C8C9108.5°109.5°
C7C8H8112.7°109.5°
H7C7H7A110.3°109.5°
N8C8C9112.5°109.4°
N8C8H8108.7°109.4°
C8N8HN8109.5°110.9°
C8N8HN8A109.4°111.0°
C9C8H8107.4°109.5°
C8C9O91113.2°120.1°
C8C9O92122.0°120.0°
HN8N8HN8A109.5°110.9°
O91C9O92124.8°120.0°
C9O92HO92109.5°117.0°
C3C1H1104.8°109.5°
C3C1H1A101.3°109.5°
C1C3C10110.5°109.5°
C1C3H3109.1°109.5°
C1C3H3A108.9°109.5°
H1C1H1A122.1°109.5°
C10C3H3109.1°109.5°
C10C3H3A108.9°109.4°
C3C10O1118.3°120.0°
C3C10O3118.1°120.0°
H3C3H3A110.2°109.4°
O1C10O3123.6°120.0°
C10O3HO3109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N1C7C2180.0°179.7°
C6N1C2N30.1°0.3°
C6N1C2O2179.5°179.7°
N1C6C5C40.0°0.6°
N1C6C5H6180.0°179.4°
N1C6C5H5180.0°179.7°
C6N1C7C8104.8°90.3°
C6N1C7H7135.2°29.7°
C6N1C7H7A14.7°149.7°
C7N1C2N3179.9°180.0°
C7N1C2O20.4°0.1°
C7N1C6C5180.0°179.7°
C7N1C6H60.0°0.3°
N1C7C8H7120.0°120.0°
N1C7C8H7A119.6°120.0°
N1C7H7H7A119.6°120.0°
N1C7C8N855.9°55.0°
N1C7C8C9177.7°175.0°
N1C7C8H863.6°65.0°
N1C2N3O2179.7°179.9°
N1C2N3C40.1°0.0°
N1C2N3C1179.9°180.0°
C2N1C6C50.1°0.6°
C2N1C6H6179.9°180.0°
C2N1C7C875.1°90.0°
C2N1C7H744.9°150.0°
C2N1C7H7A165.3°30.0°
C2N3C4C1179.9°180.0°
C2N3C4C50.0°0.0°
C2N3C4O4179.8°179.9°
C2N3C1C3179.7°90.0°
C2N3C1H159.7°150.0°
C2N3C1H1A68.1°30.0°
O2C2N3C4179.5°180.0°
O2C2N3C10.4°0.1°
N3C4C5O4179.8°179.9°
N3C4C5C60.0°0.3°
N3C4C5H5180.0°180.0°
C4N3C1C30.4°90.0°
C4N3C1H1120.4°30.0°
C4N3C1H1A111.8°150.0°
C1N3C4C5180.0°180.0°
C1N3C4O40.1°0.1°
N3C1C3H1120.0°120.0°
N3C1C3H1A112.2°120.0°
N3C1H1H1A113.8°120.0°
N3C1C3C10179.1°179.9°
N3C1C3H359.1°60.0°
N3C1C3H3A61.3°60.0°
C4C5C6H5180.0°179.8°
C4C5C6H6180.0°180.0°
O4C4C5C6179.9°179.6°
O4C4C5H50.2°0.1°
H5C5C6H60.0°0.3°
C8C7H7H7A119.6°120.0°
C7C8N8C9119.2°120.0°
C7C8N8H8122.0°120.0°
C7C8C9H8122.1°120.1°
C7C8N8HN8165.0°60.0°
C7C8N8HN8A75.0°63.9°
C7C8C9O91117.7°100.0°
C7C8C9O9262.2°80.0°
H7C7C8N8175.9°174.9°
H7C7C8C962.3°65.1°
H7C7C8H856.4°55.0°
H7AC7C8N863.6°65.0°
H7AC7C8C958.1°55.0°
H7AC7C8H8176.9°175.0°
N8C8C9H8119.5°119.9°
C8N8HN8HN8A120.0°123.9°
N8C8C9O910.7°20.0°
N8C8C9O92179.4°160.0°
C9C8N8HN875.8°60.0°
C9C8N8HN8A44.2°176.1°
C8C9O91O92179.9°180.0°
C8C9O92HO92179.9°180.0°
H8C8N8HN843.0°180.0°
H8C8N8HN8A163.0°56.1°
H8C8C9O91120.2°140.0°
H8C8C9O9259.9°40.1°
O91C9O92HO920.0°0.0°
C3C1H1H1A113.8°120.0°
C1C3C10H3120.0°120.1°
C1C3C10H3A119.6°120.0°
C1C3H3H3A119.6°120.0°
C1C3C10O1103.9°0.1°
C1C3C10O374.6°180.0°
H1C1C3C1060.9°60.0°
H1C1C3H3179.1°180.0°
H1C1C3H3A58.7°60.0°
H1AC1C3C1066.9°60.1°
H1AC1C3H353.1°60.0°
H1AC1C3H3A173.5°180.0°
C10C3H3H3A119.6°119.9°
C3C10O1O3178.4°179.9°
C3C10O3HO3178.4°179.9°
H3C3C10O1136.1°120.0°
H3C3C10O345.4°59.9°
H3AC3C10O115.7°120.1°
H3AC3C10O3165.8°60.0°
O1C10O3HO30.0°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon