UBI
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | P | sing | 1.61Å | 1.61Å | |
| OP1 | P | doub | 1.48Å | 1.51Å | |
| P | OP2 | sing | 1.61Å | 1.51Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| C1' | N1 | sing | 1.46Å | 1.46Å | |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| N1 | C6 | sing | 1.36Å | 1.33Å | |
| O2 | C2 | doub | 1.21Å | 1.25Å | |
| C2 | N3 | sing | 1.34Å | 1.35Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C5 | C4 | sing | 1.47Å | 1.49Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C6 | C5 | doub | 1.38Å | 1.38Å | |
| C5 | C21 | sing | 1.47Å | 1.50Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O22 | C21 | doub | 1.22Å | 1.22Å | |
| C21 | N23 | sing | 1.35Å | 1.33Å | |
| N23 | C24 | sing | 1.46Å | 1.46Å | |
| N23 | HN23 | sing | 0.97Å | 1.00Å | |
| C24 | C25 | sing | 1.53Å | 1.53Å | |
| C24 | H24 | sing | 1.09Å | 1.10Å | |
| C24 | H24A | sing | 1.09Å | 1.10Å | |
| C26 | C25 | sing | 1.53Å | 1.52Å | |
| C25 | C27 | sing | 1.53Å | 1.51Å | |
| C25 | H25 | sing | 1.09Å | 1.10Å | |
| C26 | H26 | sing | 1.09Å | 1.10Å | |
| C26 | H26A | sing | 1.09Å | 1.10Å | |
| C26 | H26B | sing | 1.09Å | 1.10Å | |
| C27 | H27 | sing | 1.09Å | 1.10Å | |
| C27 | H27A | sing | 1.09Å | 1.10Å | |
| C27 | H27B | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | O4' | sing | 1.45Å | 1.42Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P | OP1 | 110.5° | 109.5° |
| O5' | P | OP2 | 106.4° | 109.5° |
| O5' | P | OP3 | 98.5° | 109.5° |
| P | O5' | C5' | 121.7° | 123.0° |
| OP1 | P | OP2 | 121.5° | 109.5° |
| OP1 | P | OP3 | 108.8° | 109.5° |
| OP2 | P | OP3 | 108.8° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| C1' | N1 | C2 | 118.6° | 119.2° |
| C1' | N1 | C6 | 120.3° | 119.3° |
| N1 | C1' | C2' | 114.3° | 109.9° |
| N1 | C1' | O4' | 109.8° | 109.9° |
| N1 | C1' | H1' | 109.4° | 109.9° |
| C2 | N1 | C6 | 121.0° | 121.5° |
| N1 | C2 | O2 | 117.9° | 119.0° |
| N1 | C2 | N3 | 121.5° | 122.1° |
| N1 | C6 | C5 | 120.0° | 119.3° |
| N1 | C6 | H6 | 120.0° | 120.3° |
| O2 | C2 | N3 | 120.6° | 119.0° |
| C2 | N3 | C4 | 120.2° | 120.5° |
| C2 | N3 | HN3 | 119.9° | 119.7° |
| C4 | N3 | HN3 | 119.9° | 119.8° |
| N3 | C4 | C5 | 118.8° | 118.5° |
| N3 | C4 | O4 | 120.3° | 120.7° |
| C5 | C4 | O4 | 120.9° | 120.7° |
| C4 | C5 | C6 | 118.5° | 118.1° |
| C4 | C5 | C21 | 124.0° | 121.0° |
| C6 | C5 | C21 | 117.5° | 120.9° |
| C5 | C6 | H6 | 120.0° | 120.4° |
| C5 | C21 | O22 | 117.0° | 120.1° |
| C5 | C21 | N23 | 121.6° | 120.0° |
| C2' | C1' | O4' | 104.9° | 107.4° |
| C2' | C1' | H1' | 108.5° | 109.9° |
| C1' | C2' | C3' | 102.7° | 104.2° |
| C1' | C2' | H2' | 111.1° | 110.5° |
| C1' | C2' | H2'A | 111.1° | 110.5° |
| O4' | C1' | H1' | 109.9° | 109.8° |
| C1' | O4' | C4' | 105.3° | 106.9° |
| C3' | C2' | H2' | 111.2° | 110.5° |
| C3' | C2' | H2'A | 111.1° | 110.6° |
| C2' | C3' | O3' | 106.6° | 110.9° |
| C2' | C3' | C4' | 105.0° | 102.1° |
| C2' | C3' | H3' | 112.5° | 111.0° |
| H2' | C2' | H2'A | 109.5° | 110.4° |
| O22 | C21 | N23 | 121.4° | 120.0° |
| C21 | N23 | C24 | 126.4° | 120.0° |
| C21 | N23 | HN23 | 116.8° | 120.0° |
| C24 | N23 | HN23 | 116.8° | 120.0° |
| N23 | C24 | C25 | 110.8° | 109.5° |
| N23 | C24 | H24 | 109.1° | 109.5° |
| N23 | C24 | H24A | 109.1° | 109.5° |
| C25 | C24 | H24 | 109.1° | 109.5° |
| C25 | C24 | H24A | 109.1° | 109.4° |
| C24 | C25 | C26 | 116.2° | 109.5° |
| C24 | C25 | C27 | 109.3° | 109.4° |
| C24 | C25 | H25 | 107.2° | 109.4° |
| H24 | C24 | H24A | 109.5° | 109.5° |
| C26 | C25 | C27 | 109.2° | 109.5° |
| C26 | C25 | H25 | 107.3° | 109.5° |
| C25 | C26 | H26 | 109.5° | 109.5° |
| C25 | C26 | H26A | 109.5° | 109.5° |
| C25 | C26 | H26B | 109.5° | 109.5° |
| C27 | C25 | H25 | 107.3° | 109.5° |
| C25 | C27 | H27 | 109.5° | 109.5° |
| C25 | C27 | H27A | 109.4° | 109.4° |
| C25 | C27 | H27B | 109.5° | 109.5° |
| H26 | C26 | H26A | 109.5° | 109.5° |
| H26 | C26 | H26B | 109.4° | 109.4° |
| H26A | C26 | H26B | 109.5° | 109.5° |
| H27 | C27 | H27A | 109.5° | 109.5° |
| H27 | C27 | H27B | 109.5° | 109.6° |
| H27A | C27 | H27B | 109.5° | 109.5° |
| O3' | C3' | C4' | 105.4° | 110.9° |
| O3' | C3' | H3' | 114.1° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.5° | 110.9° |
| C3' | C4' | C5' | 114.1° | 110.7° |
| C3' | C4' | O4' | 106.7° | 103.5° |
| C3' | C4' | H4' | 107.3° | 110.6° |
| C5' | C4' | O4' | 112.7° | 110.7° |
| C5' | C4' | H4' | 107.3° | 110.7° |
| C4' | C5' | O5' | 108.4° | 109.5° |
| C4' | C5' | H5' | 109.7° | 109.5° |
| C4' | C5' | H5'A | 109.7° | 109.5° |
| O4' | C4' | H4' | 108.5° | 110.5° |
| O5' | C5' | H5' | 109.8° | 109.4° |
| O5' | C5' | H5'A | 109.8° | 109.4° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | OP1 | OP2 | 125.6° | 120.0° |
| O5' | P | OP1 | OP3 | 107.0° | 120.0° |
| O5' | P | OP2 | OP3 | 105.2° | 119.9° |
| P | O5' | C5' | C4' | 138.5° | 179.9° |
| P | O5' | C5' | H5' | 18.7° | 60.0° |
| P | O5' | C5' | H5'A | 101.7° | 60.0° |
| O5' | P | OP2 | HOP2 | 127.4° | 60.0° |
| O5' | P | OP3 | HOP3 | 115.1° | 179.9° |
| OP1 | P | OP2 | OP3 | 127.4° | 120.0° |
| OP1 | P | O5' | C5' | 3.5° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP2 | P | O5' | C5' | 130.1° | 65.1° |
| OP2 | P | OP3 | HOP3 | 134.3° | 60.0° |
| OP3 | P | O5' | C5' | 117.3° | 175.0° |
| OP3 | P | OP2 | HOP2 | 127.4° | 60.0° |
| C1' | N1 | C2 | C6 | 179.0° | 179.7° |
| C1' | N1 | C2 | O2 | 0.8° | 0.3° |
| C1' | N1 | C2 | N3 | 179.5° | 179.7° |
| C1' | N1 | C6 | C5 | 179.8° | 179.7° |
| C1' | N1 | C6 | H6 | 0.1° | 0.2° |
| N1 | C1' | C2' | O4' | 120.3° | 119.5° |
| N1 | C1' | C2' | H1' | 122.3° | 121.0° |
| N1 | C1' | O4' | H1' | 120.3° | 121.0° |
| N1 | C1' | C2' | C3' | 152.0° | 121.4° |
| N1 | C1' | C2' | H2' | 89.1° | 119.8° |
| N1 | C1' | C2' | H2'A | 33.1° | 2.6° |
| N1 | C1' | O4' | C4' | 163.7° | 145.8° |
| N1 | C2 | O2 | N3 | 179.7° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.8° | 0.0° |
| C2 | N1 | C6 | H6 | 179.1° | 180.0° |
| C2 | N1 | C1' | C2' | 130.3° | 64.7° |
| C2 | N1 | C1' | O4' | 112.2° | 53.3° |
| C2 | N1 | C1' | H1' | 8.5° | 174.3° |
| C6 | N1 | C2 | O2 | 179.8° | 179.9° |
| C6 | N1 | C2 | N3 | 0.5° | 0.0° |
| N1 | C6 | C5 | C4 | 0.8° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C21 | 179.2° | 180.0° |
| C6 | N1 | C1' | C2' | 50.7° | 115.1° |
| C6 | N1 | C1' | O4' | 66.8° | 127.0° |
| C6 | N1 | C1' | H1' | 172.5° | 6.0° |
| O2 | C2 | N3 | C4 | 179.8° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| N3 | C4 | C5 | O4 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.3° | 0.0° |
| N3 | C4 | C5 | C21 | 179.6° | 180.0° |
| HN3 | N3 | C4 | C5 | 180.0° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.1° | 0.0° |
| C4 | C5 | C6 | C21 | 179.9° | 180.0° |
| C4 | C5 | C6 | H6 | 179.2° | 180.0° |
| C4 | C5 | C21 | O22 | 172.8° | 174.4° |
| C4 | C5 | C21 | N23 | 6.1° | 5.7° |
| O4 | C4 | C5 | C6 | 179.8° | 180.0° |
| O4 | C4 | C5 | C21 | 0.3° | 0.1° |
| C6 | C5 | C21 | O22 | 7.1° | 5.7° |
| C6 | C5 | C21 | N23 | 173.9° | 174.3° |
| C21 | C5 | C6 | H6 | 0.8° | 0.0° |
| C5 | C21 | O22 | N23 | 179.0° | 180.0° |
| C5 | C21 | N23 | C24 | 179.8° | 174.9° |
| C5 | C21 | N23 | HN23 | 0.2° | 5.2° |
| C2' | C1' | O4' | H1' | 116.4° | 119.5° |
| C1' | C2' | C3' | H2' | 118.9° | 118.7° |
| C1' | C2' | C3' | H2'A | 118.9° | 118.7° |
| C1' | C2' | H2' | H2'A | 123.1° | 122.5° |
| C1' | C2' | C3' | O3' | 100.0° | 139.1° |
| C1' | C2' | C3' | C4' | 11.6° | 20.9° |
| C1' | C2' | C3' | H3' | 134.3° | 97.3° |
| C2' | C1' | O4' | C4' | 40.5° | 26.3° |
| O4' | C1' | C2' | C3' | 31.7° | 2.0° |
| O4' | C1' | C2' | H2' | 150.6° | 120.7° |
| O4' | C1' | C2' | H2'A | 87.3° | 116.9° |
| C1' | O4' | C4' | C3' | 32.9° | 39.8° |
| C1' | O4' | C4' | C5' | 158.9° | 158.4° |
| C1' | O4' | C4' | H4' | 82.4° | 78.6° |
| H1' | C1' | C2' | C3' | 85.8° | 117.5° |
| H1' | C1' | C2' | H2' | 33.2° | 1.2° |
| H1' | C1' | C2' | H2'A | 155.3° | 123.6° |
| H1' | C1' | O4' | C4' | 75.9° | 93.2° |
| C3' | C2' | H2' | H2'A | 123.2° | 122.7° |
| C2' | C3' | O3' | C4' | 111.3° | 112.8° |
| C2' | C3' | O3' | H3' | 124.8° | 123.7° |
| C2' | C3' | C4' | H3' | 122.7° | 118.3° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | C5' | 137.3° | 155.5° |
| C2' | C3' | C4' | O4' | 12.1° | 36.9° |
| C2' | C3' | C4' | H4' | 104.0° | 81.5° |
| H2' | C2' | C3' | O3' | 18.9° | 20.4° |
| H2' | C2' | C3' | C4' | 130.5° | 97.8° |
| H2' | C2' | C3' | H3' | 106.8° | 144.0° |
| H2'A | C2' | C3' | O3' | 141.1° | 102.2° |
| H2'A | C2' | C3' | C4' | 107.4° | 139.6° |
| H2'A | C2' | C3' | H3' | 15.4° | 21.4° |
| O22 | C21 | N23 | C24 | 1.3° | 5.1° |
| O22 | C21 | N23 | HN23 | 178.7° | 174.9° |
| C21 | N23 | C24 | HN23 | 180.0° | 179.9° |
| C21 | N23 | C24 | C25 | 125.3° | 180.0° |
| C21 | N23 | C24 | H24 | 114.5° | 60.0° |
| C21 | N23 | C24 | H24A | 5.1° | 60.1° |
| N23 | C24 | C25 | H24 | 120.2° | 120.0° |
| N23 | C24 | C25 | H24A | 120.2° | 120.0° |
| N23 | C24 | H24 | H24A | 119.4° | 120.1° |
| N23 | C24 | C25 | C26 | 7.2° | 175.0° |
| N23 | C24 | C25 | C27 | 116.9° | 65.0° |
| N23 | C24 | C25 | H25 | 127.1° | 55.0° |
| HN23 | N23 | C24 | C25 | 54.7° | 0.1° |
| HN23 | N23 | C24 | H24 | 65.5° | 119.9° |
| HN23 | N23 | C24 | H24A | 174.9° | 120.0° |
| C25 | C24 | H24 | H24A | 119.4° | 120.0° |
| C24 | C25 | C26 | C27 | 124.1° | 120.0° |
| C24 | C25 | C26 | H25 | 119.8° | 119.9° |
| C24 | C25 | C27 | H25 | 115.9° | 119.9° |
| C24 | C25 | C26 | H26 | 180.0° | 60.0° |
| C24 | C25 | C26 | H26A | 60.0° | 180.0° |
| C24 | C25 | C26 | H26B | 60.0° | 59.9° |
| C24 | C25 | C27 | H27 | 180.0° | 60.0° |
| C24 | C25 | C27 | H27A | 60.0° | 180.0° |
| C24 | C25 | C27 | H27B | 60.0° | 60.1° |
| H24 | C24 | C25 | C26 | 113.0° | 55.0° |
| H24 | C24 | C25 | C27 | 122.9° | 175.0° |
| H24 | C24 | C25 | H25 | 6.9° | 65.0° |
| H24A | C24 | C25 | C26 | 127.4° | 65.0° |
| H24A | C24 | C25 | C27 | 3.3° | 55.0° |
| H24A | C24 | C25 | H25 | 112.7° | 175.0° |
| C26 | C25 | C27 | H25 | 116.0° | 120.1° |
| C25 | C26 | H26 | H26A | 120.0° | 120.1° |
| C25 | C26 | H26 | H26B | 120.0° | 119.9° |
| C25 | C26 | H26A | H26B | 120.0° | 120.0° |
| C26 | C25 | C27 | H27 | 51.9° | 180.0° |
| C26 | C25 | C27 | H27A | 171.9° | 60.0° |
| C26 | C25 | C27 | H27B | 68.1° | 60.0° |
| C27 | C25 | C26 | H26 | 55.9° | 60.0° |
| C27 | C25 | C26 | H26A | 64.2° | 60.1° |
| C27 | C25 | C26 | H26B | 175.8° | 179.9° |
| C25 | C27 | H27 | H27A | 120.0° | 119.9° |
| C25 | C27 | H27 | H27B | 120.0° | 120.0° |
| C25 | C27 | H27A | H27B | 120.0° | 119.9° |
| H25 | C25 | C26 | H26 | 60.1° | 179.9° |
| H25 | C25 | C26 | H26A | 179.8° | 60.0° |
| H25 | C25 | C26 | H26B | 59.8° | 60.0° |
| H25 | C25 | C27 | H27 | 64.1° | 59.9° |
| H25 | C25 | C27 | H27A | 55.9° | 60.1° |
| H25 | C25 | C27 | H27B | 175.9° | 180.0° |
| H26 | C26 | H26A | H26B | 120.0° | 119.9° |
| H27 | C27 | H27A | H27B | 120.0° | 120.1° |
| O3' | C3' | C4' | H3' | 124.9° | 123.5° |
| O3' | C3' | C4' | C5' | 110.3° | 86.3° |
| O3' | C3' | C4' | O4' | 124.5° | 155.1° |
| O3' | C3' | C4' | H4' | 8.4° | 36.8° |
| C4' | C3' | O3' | HO3' | 68.7° | 174.3° |
| C3' | C4' | C5' | O4' | 122.0° | 114.2° |
| C3' | C4' | C5' | H4' | 118.7° | 123.0° |
| C3' | C4' | O4' | H4' | 115.3° | 118.4° |
| C3' | C4' | C5' | O5' | 65.2° | 175.0° |
| C3' | C4' | C5' | H5' | 175.0° | 55.1° |
| C3' | C4' | C5' | H5'A | 54.7° | 65.0° |
| H3' | C3' | O3' | HO3' | 55.2° | 62.2° |
| H3' | C3' | C4' | C5' | 14.5° | 37.2° |
| H3' | C3' | C4' | O4' | 110.7° | 81.4° |
| H3' | C3' | C4' | H4' | 133.2° | 160.3° |
| C5' | C4' | O4' | H4' | 118.7° | 123.0° |
| C4' | C5' | O5' | H5' | 119.8° | 120.0° |
| C4' | C5' | O5' | H5'A | 119.8° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.5° | 120.1° |
| O4' | C4' | C5' | O5' | 56.8° | 70.8° |
| O4' | C4' | C5' | H5' | 63.0° | 169.2° |
| O4' | C4' | C5' | H5'A | 176.7° | 49.2° |
| H4' | C4' | C5' | O5' | 176.2° | 52.0° |
| H4' | C4' | C5' | H5' | 56.3° | 67.9° |
| H4' | C4' | C5' | H5'A | 64.0° | 172.0° |
| O5' | C5' | H5' | H5'A | 120.5° | 120.0° |
