UBB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1P	P	sing	1.62Å	1.49Å
O1P	H1P	sing	0.98Å	0.95Å
P	O2P	doub	1.50Å	1.48Å
P	O3P	sing	1.62Å	138.63Å
P	O5'	sing	1.62Å	1.59Å
O3P	H3P	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.43Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.43Å	1.42Å
C1'	N1	sing	1.43Å	1.47Å
C1'	C2'	sing	1.52Å	1.52Å
C1'	H1'	sing	1.10Å	1.12Å
N1	C6	sing	1.39Å	1.38Å
N1	C2	sing	1.41Å	1.37Å
C6	C5	doub	1.33Å	1.34Å
C6	H6	sing	1.08Å	1.10Å
C5	C4	sing	1.48Å	1.42Å
C5	H5	sing	1.08Å	1.10Å
C4	O4	doub	1.23Å	1.23Å
C4	N3	sing	1.39Å	1.37Å
N3	C2	sing	1.40Å	1.37Å
N3	HN3	sing	1.02Å	1.02Å
C2	O2	doub	1.23Å	1.22Å
C2'	C3'	sing	1.51Å	1.52Å
C2'	H2'1	sing	1.10Å	1.11Å
C2'	H2'2	sing	1.09Å	1.11Å
C3'	H3'1	sing	1.10Å	1.11Å
C3'	H3'2	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O1P	H1P	119.5°	118.9°
O1P	P	O2P	119.5°	115.3°
O1P	P	O3P	140.0°	103.3°
O1P	P	O5'	106.3°	103.7°
O2P	P	O3P	97.2°	115.0°
O2P	P	O5'	110.1°	115.0°
O3P	P	O5'	41.0°	102.9°
P	O3P	H3P	140.1°	118.9°
P	O5'	C5'	120.0°	118.5°
O5'	C5'	C4'	110.5°	109.0°
O5'	C5'	H5'1	111.9°	108.9°
O5'	C5'	H5'2	111.9°	108.9°
C4'	C5'	H5'1	111.8°	110.4°
C4'	C5'	H5'2	111.8°	110.4°
C5'	C4'	O4'	110.0°	108.4°
C5'	C4'	C3'	114.3°	113.1°
C5'	C4'	H4'	104.8°	108.9°
H5'1	C5'	H5'2	98.6°	109.2°
O4'	C4'	C3'	106.3°	106.5°
O4'	C4'	H4'	113.0°	108.7°
C4'	O4'	C1'	109.6°	108.9°
C3'	C4'	H4'	108.5°	111.2°
C4'	C3'	C2'	102.9°	102.7°
C4'	C3'	H3'1	114.7°	109.5°
C4'	C3'	H3'2	114.7°	113.7°
O4'	C1'	N1	107.5°	109.4°
O4'	C1'	C2'	105.8°	106.9°
O4'	C1'	H1'	116.2°	108.1°
N1	C1'	C2'	117.3°	112.9°
N1	C1'	H1'	104.3°	108.0°
C1'	N1	C6	122.5°	118.5°
C1'	N1	C2	116.9°	121.2°
C2'	C1'	H1'	106.2°	111.4°
C1'	C2'	C3'	101.8°	101.9°
C1'	C2'	H2'1	115.1°	111.0°
C1'	C2'	H2'2	115.1°	112.8°
C6	N1	C2	120.5°	120.3°
N1	C6	C5	122.9°	123.9°
N1	C6	H6	120.0°	115.5°
N1	C2	N3	115.0°	115.1°
N1	C2	O2	122.8°	123.8°
C5	C6	H6	117.1°	120.5°
C6	C5	C4	119.7°	119.3°
C6	C5	H5	117.3°	121.9°
C4	C5	H5	123.0°	118.8°
C5	C4	O4	125.8°	120.8°
C5	C4	N3	114.5°	114.6°
O4	C4	N3	119.1°	124.5°
C4	N3	C2	127.3°	126.8°
C4	N3	HN3	116.4°	116.6°
C2	N3	HN3	116.2°	116.6°
N3	C2	O2	122.2°	121.1°
C3'	C2'	H2'1	115.2°	109.7°
C3'	C2'	H2'2	115.2°	113.6°
C2'	C3'	H3'1	114.7°	109.2°
C2'	C3'	H3'2	114.7°	113.6°
H2'1	C2'	H2'2	95.3°	107.7°
H3'1	C3'	H3'2	95.8°	108.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O3P	163.6°	120.1°
O1P	P	O2P	O5'	123.5°	120.7°
O1P	P	O3P	O5'	45.0°	107.7°
O1P	P	O3P	H3P	180.0°	78.5°
O1P	P	O5'	C5'	44.6°	53.2°
H1P	O1P	P	O2P	180.0°	48.8°
H1P	O1P	P	O3P	25.8°	77.5°
H1P	O1P	P	O5'	54.7°	175.4°
O2P	P	O3P	O5'	112.5°	125.8°
O2P	P	O3P	H3P	22.5°	48.0°
O2P	P	O5'	C5'	175.4°	180.0°
O3P	P	O5'	C5'	107.2°	54.2°
O5'	P	O3P	H3P	135.0°	173.8°
P	O5'	C5'	C4'	164.9°	180.0°
P	O5'	C5'	H5'1	39.6°	59.5°
P	O5'	C5'	H5'2	69.9°	59.5°
O5'	C5'	C4'	H5'1	125.3°	119.6°
O5'	C5'	C4'	H5'2	125.3°	119.5°
O5'	C5'	H5'1	H5'2	117.8°	118.8°
O5'	C5'	C4'	O4'	76.4°	61.7°
O5'	C5'	C4'	C3'	43.1°	179.5°
O5'	C5'	C4'	H4'	161.9°	56.3°
C4'	C5'	H5'1	H5'2	117.7°	121.6°
C5'	C4'	O4'	C3'	124.3°	121.9°
C5'	C4'	O4'	H4'	116.8°	118.2°
C5'	C4'	C3'	H4'	116.6°	122.9°
C5'	C4'	O4'	C1'	124.8°	111.7°
C5'	C4'	C3'	C2'	99.8°	89.8°
C5'	C4'	C3'	H3'1	25.5°	154.3°
C5'	C4'	C3'	H3'2	135.0°	33.3°
H5'1	C5'	C4'	O4'	158.3°	57.8°
H5'1	C5'	C4'	C3'	82.2°	60.0°
H5'1	C5'	C4'	H4'	36.6°	175.9°
H5'2	C5'	C4'	O4'	48.9°	178.7°
H5'2	C5'	C4'	C3'	168.4°	60.9°
H5'2	C5'	C4'	H4'	72.9°	63.2°
O4'	C4'	C3'	H4'	121.9°	118.2°
C4'	O4'	C1'	N1	149.0°	135.5°
C4'	O4'	C1'	C2'	22.9°	12.9°
C4'	O4'	C1'	H1'	94.6°	107.2°
O4'	C4'	C3'	C2'	21.7°	29.1°
O4'	C4'	C3'	H3'1	147.0°	86.8°
O4'	C4'	C3'	H3'2	103.5°	152.3°
C3'	C4'	O4'	C1'	0.6°	10.3°
C4'	C3'	C2'	C1'	34.1°	35.4°
C4'	C3'	C2'	H3'1	125.3°	116.1°
C4'	C3'	C2'	H3'2	125.2°	123.2°
C4'	C3'	C2'	H2'1	159.3°	82.3°
C4'	C3'	C2'	H2'2	91.1°	157.1°
C4'	C3'	H3'1	H3'2	120.6°	124.3°
H4'	C4'	O4'	C1'	118.4°	130.1°
H4'	C4'	C3'	C2'	143.6°	147.3°
H4'	C4'	C3'	H3'1	91.1°	31.4°
H4'	C4'	C3'	H3'2	18.3°	89.5°
O4'	C1'	N1	C2'	119.0°	119.0°
O4'	C1'	N1	H1'	123.9°	117.4°
O4'	C1'	C2'	H1'	124.0°	117.9°
O4'	C1'	N1	C6	78.9°	32.7°
O4'	C1'	N1	C2	99.7°	147.4°
O4'	C1'	C2'	C3'	35.7°	30.6°
O4'	C1'	C2'	H2'1	160.9°	86.2°
O4'	C1'	C2'	H2'2	89.6°	152.7°
N1	C1'	C2'	H1'	116.1°	121.7°
C1'	N1	C6	C2	178.6°	179.9°
C1'	N1	C6	C5	175.7°	180.0°
C1'	N1	C6	H6	4.3°	0.0°
C1'	N1	C2	N3	175.6°	180.0°
C1'	N1	C2	O2	4.5°	0.1°
N1	C1'	C2'	C3'	155.6°	151.0°
N1	C1'	C2'	H2'1	79.2°	34.2°
N1	C1'	C2'	H2'2	30.3°	86.8°
C2'	C1'	N1	C6	40.0°	86.3°
C2'	C1'	N1	C2	141.4°	93.6°
C1'	C2'	C3'	H2'1	125.2°	117.8°
C1'	C2'	C3'	H2'2	125.2°	121.7°
C1'	C2'	H2'1	H2'2	121.0°	124.0°
C1'	C2'	C3'	H3'1	159.4°	80.7°
C1'	C2'	C3'	H3'2	91.1°	158.7°
H1'	C1'	N1	C6	157.1°	150.1°
H1'	C1'	N1	C2	24.3°	30.0°
H1'	C1'	C2'	C3'	88.3°	87.3°
H1'	C1'	C2'	H2'1	36.9°	155.9°
H1'	C1'	C2'	H2'2	146.4°	34.8°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	C4	0.0°	0.0°
N1	C6	C5	H5	179.9°	180.0°
C6	N1	C2	N3	3.0°	0.0°
C6	N1	C2	O2	176.8°	180.0°
C2	N1	C6	C5	2.9°	0.0°
C2	N1	C6	H6	177.1°	180.0°
N1	C2	N3	C4	0.6°	0.0°
N1	C2	N3	O2	179.9°	180.0°
N1	C2	N3	HN3	179.4°	180.0°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	O4	168.4°	179.9°
C6	C5	C4	N3	2.2°	0.0°
H6	C6	C5	C4	180.0°	180.0°
H6	C6	C5	H5	0.0°	0.0°
C5	C4	O4	N3	170.2°	179.9°
C5	C4	N3	C2	2.0°	0.0°
C5	C4	N3	HN3	178.0°	180.0°
H5	C5	C4	O4	11.6°	0.1°
H5	C5	C4	N3	177.8°	180.0°
O4	C4	N3	C2	169.2°	180.0°
O4	C4	N3	HN3	10.7°	0.0°
C4	N3	C2	HN3	180.0°	180.0°
C4	N3	C2	O2	179.3°	180.0°
HN3	N3	C2	O2	0.7°	0.0°
C3'	C2'	H2'1	H2'2	121.0°	124.1°
C2'	C3'	H3'1	H3'2	120.6°	124.0°
H2'1	C2'	C3'	H3'1	75.4°	161.5°
H2'1	C2'	C3'	H3'2	34.1°	40.9°
H2'2	C2'	C3'	H3'1	34.1°	41.0°
H2'2	C2'	C3'	H3'2	143.6°	79.6°

Definition date:	2003-02-13
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1NH3