U8U

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.42Å	1.34Å
N1	C6	sing	1.40Å	1.46Å
N1	C1'	sing	1.43Å	1.46Å
C2	S2	doub	1.68Å	1.81Å
C2	N3	sing	1.39Å	1.38Å
N3	C4	sing	1.39Å	1.38Å
N3	HN3	sing	1.02Å	1.00Å
C4	O4	doub	1.23Å	1.23Å
C4	C5	sing	1.49Å	1.45Å
C5	C6	doub	1.34Å	1.35Å
C5	C	sing	1.50Å	1.52Å
C6	H6	sing	1.09Å	1.08Å
C	N	sing	1.43Å	1.47Å
C	HC1	sing	1.09Å	1.10Å
C	HC2	sing	1.09Å	1.10Å
N	CA	sing	1.47Å	1.47Å
N	HN1	sing	1.03Å	1.00Å
CA	HA1	sing	1.09Å	1.10Å
CA	HA2	sing	1.09Å	1.10Å
CA	HA3	sing	1.09Å	1.10Å
C1'	C2'	sing	1.52Å	1.53Å
C1'	O4'	sing	1.44Å	1.43Å
C1'	H1'	sing	1.09Å	1.10Å
O2'	C2'	sing	1.41Å	1.41Å
O2'	HO2'	sing	0.97Å	0.95Å
C2'	C3'	sing	1.51Å	1.53Å
C2'	H2'	sing	1.10Å	1.10Å
O3'	C3'	sing	1.43Å	1.43Å
O3'	HO3'	sing	0.97Å	0.95Å
C3'	C4'	sing	1.52Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.42Å
C4'	C5'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	O5'	sing	1.42Å	1.41Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
O5'	P	sing	1.62Å	1.61Å
P	OP1	doub	1.50Å	1.48Å
P	OP2	sing	1.62Å	1.48Å
P	OP3	sing	1.62Å	33.39Å
OP2	HOP2	sing	0.98Å	0.95Å
OP3	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	118.0°	118.4°
C2	N1	C1'	123.2°	123.5°
N1	C2	S2	121.6°	125.5°
N1	C2	N3	119.4°	116.3°
C6	N1	C1'	118.8°	118.0°
N1	C6	C5	121.4°	125.2°
N1	C6	H6	119.3°	114.7°
N1	C1'	C2'	111.9°	112.5°
N1	C1'	O4'	113.5°	109.0°
N1	C1'	H1'	104.0°	107.3°
S2	C2	N3	119.0°	118.2°
C2	N3	C4	126.2°	126.9°
C2	N3	HN3	116.9°	116.6°
C4	N3	HN3	116.9°	116.6°
N3	C4	O4	120.1°	123.7°
N3	C4	C5	113.9°	114.7°
O4	C4	C5	126.0°	121.6°
C4	C5	C6	120.9°	118.5°
C4	C5	C	119.5°	118.0°
C6	C5	C	119.6°	123.5°
C5	C6	H6	119.3°	120.0°
C5	C	N	109.5°	107.5°
C5	C	HC1	109.5°	108.8°
C5	C	HC2	109.4°	108.8°
N	C	HC1	109.4°	110.8°
N	C	HC2	109.5°	110.7°
C	N	CA	113.6°	111.7°
C	N	HN1	108.1°	110.4°
HC1	C	HC2	109.5°	110.1°
CA	N	HN1	108.1°	108.2°
N	CA	HA1	109.4°	110.1°
N	CA	HA2	109.4°	110.2°
N	CA	HA3	109.5°	110.2°
HA1	CA	HA2	109.5°	108.8°
HA1	CA	HA3	109.5°	108.8°
HA2	CA	HA3	109.5°	108.7°
C2'	C1'	O4'	106.4°	106.5°
C2'	C1'	H1'	111.4°	112.6°
C1'	C2'	O2'	109.6°	112.6°
C1'	C2'	C3'	105.1°	102.0°
C1'	C2'	H2'	112.5°	111.1°
O4'	C1'	H1'	109.8°	108.9°
C1'	O4'	C4'	108.4°	109.2°
C2'	O2'	HO2'	109.5°	107.2°
O2'	C2'	C3'	110.1°	112.3°
O2'	C2'	H2'	107.6°	108.6°
C3'	C2'	H2'	112.0°	110.1°
C2'	C3'	O3'	112.9°	110.3°
C2'	C3'	C4'	102.7°	102.1°
C2'	C3'	H3'	112.1°	114.0°
C3'	O3'	HO3'	109.5°	106.4°
O3'	C3'	C4'	110.6°	107.9°
O3'	C3'	H3'	104.4°	107.8°
C4'	C3'	H3'	114.4°	114.5°
C3'	C4'	O4'	104.7°	105.9°
C3'	C4'	C5'	115.0°	113.3°
C3'	C4'	H4'	109.7°	112.2°
O4'	C4'	C5'	111.5°	108.2°
O4'	C4'	H4'	113.4°	107.7°
C5'	C4'	H4'	102.8°	109.3°
C4'	C5'	O5'	111.0°	108.6°
C4'	C5'	H5'	108.6°	110.1°
C4'	C5'	H5''	109.0°	110.1°
O5'	C5'	H5'	108.6°	109.2°
O5'	C5'	H5''	109.0°	109.3°
C5'	O5'	P	120.2°	118.5°
H5'	C5'	H5''	110.6°	109.6°
O5'	P	OP1	108.2°	115.0°
O5'	P	OP2	107.9°	103.8°
O5'	P	OP3	86.5°	102.9°
OP1	P	OP2	119.7°	115.3°
OP1	P	OP3	72.4°	114.9°
OP2	P	OP3	154.8°	103.3°
P	OP2	HOP2	109.5°	119.0°
P	OP3	HOP3	86.4°	119.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	179.2°	178.1°
N1	C2	S2	N3	179.5°	179.5°
N1	C2	N3	C4	0.6°	0.6°
N1	C2	N3	HN3	179.4°	179.5°
C2	N1	C6	C5	3.5°	1.5°
C2	N1	C6	H6	176.5°	178.5°
C2	N1	C1'	C2'	89.2°	96.4°
C2	N1	C1'	O4'	150.5°	145.7°
C2	N1	C1'	H1'	31.2°	28.0°
C6	N1	C2	S2	178.4°	177.8°
C6	N1	C2	N3	2.2°	1.7°
N1	C6	C5	C4	2.2°	0.2°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	C	177.8°	179.9°
C6	N1	C1'	C2'	91.7°	85.6°
C6	N1	C1'	O4'	28.7°	32.2°
C6	N1	C1'	H1'	147.9°	150.0°
C1'	N1	C2	S2	2.5°	0.1°
C1'	N1	C2	N3	177.0°	179.6°
C1'	N1	C6	C5	175.6°	179.6°
C1'	N1	C6	H6	4.4°	0.4°
N1	C1'	C2'	O4'	124.5°	119.3°
N1	C1'	C2'	H1'	115.9°	121.4°
N1	C1'	O4'	H1'	115.9°	116.8°
N1	C1'	C2'	O2'	115.1°	89.4°
N1	C1'	C2'	C3'	126.6°	150.0°
N1	C1'	C2'	H2'	4.6°	32.7°
N1	C1'	O4'	C4'	147.6°	132.9°
S2	C2	N3	C4	178.9°	178.9°
S2	C2	N3	HN3	1.1°	1.0°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	O4	178.7°	179.6°
C2	N3	C4	C5	1.9°	0.7°
N3	C4	O4	C5	179.3°	179.7°
N3	C4	C5	C6	0.5°	0.9°
N3	C4	C5	C	179.6°	179.0°
HN3	N3	C4	O4	1.3°	0.5°
HN3	N3	C4	C5	178.1°	179.2°
O4	C4	C5	C6	179.8°	179.4°
O4	C4	C5	C	0.2°	0.7°
C4	C5	C6	C	179.9°	179.9°
C4	C5	C6	H6	177.9°	179.9°
C4	C5	C	N	101.7°	90.0°
C4	C5	C	HC1	138.3°	149.9°
C4	C5	C	HC2	18.3°	30.0°
C6	C5	C	N	78.4°	90.0°
C6	C5	C	HC1	41.6°	30.0°
C6	C5	C	HC2	161.6°	150.0°
C	C5	C6	H6	2.2°	0.1°
C5	C	N	HC1	120.0°	118.8°
C5	C	N	HC2	120.0°	118.8°
C5	C	HC1	HC2	120.0°	119.2°
C5	C	N	CA	177.0°	179.5°
C5	C	N	HN1	63.0°	60.0°
N	C	HC1	HC2	120.0°	122.8°
C	N	CA	HN1	120.0°	121.7°
C	N	CA	HA1	102.2°	147.3°
C	N	CA	HA2	137.9°	27.3°
C	N	CA	HA3	17.8°	92.7°
HC1	C	N	CA	63.0°	61.7°
HC1	C	N	HN1	57.0°	58.8°
HC2	C	N	CA	57.0°	60.8°
HC2	C	N	HN1	177.0°	178.8°
N	CA	HA1	HA2	120.0°	120.8°
N	CA	HA1	HA3	120.0°	120.9°
N	CA	HA2	HA3	120.0°	120.9°
HN1	N	CA	HA1	137.8°	25.6°
HN1	N	CA	HA2	17.9°	94.4°
HN1	N	CA	HA3	102.2°	145.6°
HA1	CA	HA2	HA3	120.0°	118.3°
C2'	C1'	O4'	H1'	120.7°	121.6°
C1'	C2'	O2'	C3'	115.1°	114.5°
C1'	C2'	O2'	H2'	122.6°	123.5°
C1'	C2'	O2'	HO2'	154.0°	37.7°
C1'	C2'	C3'	H2'	122.4°	118.0°
C1'	C2'	C3'	O3'	137.5°	77.4°
C1'	C2'	C3'	C4'	18.4°	37.1°
C1'	C2'	C3'	H3'	104.9°	161.1°
C2'	C1'	O4'	C4'	24.1°	11.3°
O4'	C1'	C2'	O2'	120.5°	151.3°
O4'	C1'	C2'	C3'	2.2°	30.7°
O4'	C1'	C2'	H2'	119.9°	86.6°
C1'	O4'	C4'	C3'	36.4°	12.8°
C1'	O4'	C4'	C5'	161.4°	109.0°
C1'	O4'	C4'	H4'	83.3°	133.0°
H1'	C1'	C2'	O2'	0.8°	32.1°
H1'	C1'	C2'	C3'	117.4°	88.5°
H1'	C1'	C2'	H2'	120.5°	154.2°
H1'	C1'	O4'	C4'	96.6°	110.3°
O2'	C2'	C3'	H2'	119.7°	121.1°
O2'	C2'	C3'	O3'	19.6°	43.5°
O2'	C2'	C3'	C4'	99.5°	158.0°
O2'	C2'	C3'	H3'	137.3°	78.0°
HO2'	O2'	C2'	C3'	90.9°	76.8°
HO2'	O2'	C2'	H2'	31.4°	161.2°
C2'	C3'	O3'	C4'	114.4°	110.7°
C2'	C3'	O3'	H3'	122.1°	125.1°
C2'	C3'	O3'	HO3'	83.5°	164.5°
C2'	C3'	C4'	H3'	121.7°	123.7°
C2'	C3'	C4'	O4'	33.0°	31.5°
C2'	C3'	C4'	C5'	155.7°	86.9°
C2'	C3'	C4'	H4'	89.0°	148.7°
H2'	C2'	C3'	O3'	100.1°	164.6°
H2'	C2'	C3'	C4'	140.8°	80.9°
H2'	C2'	C3'	H3'	17.5°	43.1°
O3'	C3'	C4'	H3'	117.5°	120.1°
O3'	C3'	C4'	O4'	153.8°	84.7°
O3'	C3'	C4'	C5'	83.5°	156.8°
O3'	C3'	C4'	H4'	31.7°	32.5°
HO3'	O3'	C3'	C4'	162.1°	53.8°
HO3'	O3'	C3'	H3'	38.6°	70.4°
C3'	C4'	O4'	C5'	125.0°	121.7°
C3'	C4'	O4'	H4'	119.6°	120.2°
C3'	C4'	C5'	H4'	119.2°	125.9°
C3'	C4'	C5'	O5'	57.9°	179.5°
C3'	C4'	C5'	H5'	61.5°	60.0°
C3'	C4'	C5'	H5''	177.9°	60.9°
H3'	C3'	C4'	O4'	88.7°	155.2°
H3'	C3'	C4'	C5'	34.0°	36.8°
H3'	C3'	C4'	H4'	149.3°	87.6°
O4'	C4'	C5'	H4'	121.8°	117.0°
O4'	C4'	C5'	O5'	61.1°	62.4°
O4'	C4'	C5'	H5'	179.5°	57.1°
O4'	C4'	C5'	H5''	58.9°	178.0°
C4'	C5'	O5'	H5'	119.4°	120.1°
C4'	C5'	O5'	H5''	120.0°	120.1°
C4'	C5'	H5'	H5''	119.6°	121.2°
C4'	C5'	O5'	P	178.5°	180.0°
H4'	C4'	C5'	O5'	177.1°	54.6°
H4'	C4'	C5'	H5'	57.7°	174.1°
H4'	C4'	C5'	H5''	62.9°	65.0°
O5'	C5'	H5'	H5''	119.6°	119.6°
C5'	O5'	P	OP1	61.5°	179.9°
C5'	O5'	P	OP2	69.4°	53.2°
C5'	O5'	P	OP3	131.7°	54.2°
H5'	C5'	O5'	P	59.1°	59.9°
H5''	C5'	O5'	P	61.5°	59.9°
O5'	P	OP1	OP2	124.1°	120.7°
O5'	P	OP1	OP3	80.1°	119.3°
O5'	P	OP2	OP3	122.3°	107.1°
O5'	P	OP2	HOP2	33.5°	175.4°
O5'	P	OP3	HOP3	180.0°	173.8°
OP1	P	OP2	OP3	113.4°	126.2°
OP1	P	OP2	HOP2	90.8°	48.7°
OP1	P	OP3	HOP3	69.7°	48.0°
OP2	P	OP3	HOP3	53.7°	78.5°
OP3	P	OP2	HOP2	155.8°	77.5°

Definition date:	2000-05-16
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB