Summary Geometry PCM/PTM Related PDB entries

U8G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C43	C42	sing	1.50Å	1.48Å
C40	C42	doub	1.36Å	1.37Å	Aromatic
C40	N07	sing	1.34Å	1.42Å	Aromatic
C42	N04	sing	1.36Å	1.41Å	Aromatic
N07	C36	sing	1.46Å	1.43Å
N07	C31	sing	1.35Å	1.36Å	Aromatic
N04	C32	sing	1.46Å	1.45Å
N04	C31	sing	1.36Å	1.37Å	Aromatic
C31	RH01	sing	2.12Å	2.11Å
C32	H1	sing	0.97Å	1.10Å
C32	H2	sing	0.97Å	1.10Å
C32	H3	sing	0.97Å	1.10Å
C36	H4	sing	0.97Å	1.10Å
C36	H5	sing	0.97Å	1.10Å
C36	H6	sing	0.97Å	1.10Å
C40	H7	sing	0.95Å	1.08Å
C43	H8	sing	0.98Å	1.10Å
C43	H9	sing	0.98Å	1.10Å
C43	C1	sing	1.55Å	49.15Å
C1	C2	sing	1.52Å	0.00Å
C1	N1	sing	1.46Å	0.00Å
N1	C4	sing	1.35Å	0.00Å
C2	O2	sing	1.33Å	0.00Å
C2	O1	doub	1.20Å	0.00Å
O2	C7	sing	1.45Å	0.00Å
C4	O3	sing	1.35Å	0.00Å
C4	O4	doub	1.22Å	0.00Å
O3	C6	sing	1.49Å	0.00Å
C6	C8	sing	1.53Å	0.00Å
C6	C9	sing	1.52Å	0.00Å
C6	C10	sing	1.53Å	0.00Å
C1	H10	sing	1.00Å	0.00Å
N1	H12	sing	0.88Å	0.00Å
C7	H13	sing	0.97Å	0.00Å
C7	H14	sing	0.97Å	0.00Å
C7	H15	sing	0.97Å	0.00Å
C8	H16	sing	0.97Å	0.00Å
C8	H17	sing	0.97Å	0.00Å
C8	H18	sing	0.97Å	0.00Å
C9	H19	sing	0.97Å	0.00Å
C9	H20	sing	0.97Å	0.00Å
C9	H21	sing	0.97Å	0.00Å
C10	H22	sing	0.97Å	0.00Å
C10	H23	sing	0.97Å	0.00Å
C10	H24	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C43	C42	C40	137.2°	125.9°
C43	C42	N04	117.0°	126.7°
C42	C43	H8	122.6°	108.7°
C42	C43	H9	122.7°	109.9°
C42	C43	C1	41.6°	114.2°
C42	C40	N07	105.2°	108.3°
C40	C42	N04	105.8°	107.4°
C42	C40	H7	127.4°	126.2°
C40	N07	C36	123.0°	127.6°
C40	N07	C31	113.5°	108.6°
N07	C40	H7	127.4°	125.6°
C42	N04	C32	120.1°	130.5°
C42	N04	C31	113.1°	108.0°
C36	N07	C31	123.3°	123.8°
N07	C36	H4	109.5°	109.6°
N07	C36	H5	109.5°	109.6°
N07	C36	H6	109.5°	109.6°
N07	C31	N04	102.2°	107.7°
N07	C31	RH01	129.9°	126.1°
C32	N04	C31	126.7°	121.5°
N04	C32	H1	109.5°	110.0°
N04	C32	H2	109.5°	110.0°
N04	C32	H3	109.4°	109.3°
N04	C31	RH01	127.6°	126.1°
H1	C32	H2	109.5°	109.1°
H1	C32	H3	109.5°	109.2°
H2	C32	H3	109.5°	109.3°
H4	C36	H5	109.5°	109.3°
H4	C36	H6	109.5°	109.3°
H5	C36	H6	109.5°	109.3°
H8	C43	H9	109.5°	106.5°
H8	C43	C1	122.7°	108.4°
H9	C43	C1	122.6°	108.8°
C43	C1	C2	90.0°	110.9°
C43	C1	N1	90.0°	110.4°
C43	C1	H10	90.0°	108.5°
C2	C1	N1	90.0°	111.1°
C1	C2	O2	90.0°	111.2°
C1	C2	O1	90.0°	123.3°
C2	C1	H10	90.0°	107.6°
C1	N1	C4	90.0°	125.4°
N1	C1	H10	90.0°	108.2°
C1	N1	H12	90.0°	116.3°
N1	C4	O3	90.0°	109.0°
N1	C4	O4	90.0°	124.4°
C4	N1	H12	90.0°	118.2°
O2	C2	O1	90.0°	125.5°
C2	O2	C7	90.0°	121.8°
O2	C7	H13	90.0°	109.4°
O2	C7	H14	90.0°	109.3°
O2	C7	H15	90.0°	109.4°
O3	C4	O4	90.0°	126.6°
C4	O3	C6	90.0°	126.6°
O3	C6	C8	90.0°	111.9°
O3	C6	C9	90.0°	99.8°
O3	C6	C10	90.0°	110.3°
C8	C6	C9	90.0°	111.3°
C8	C6	C10	90.0°	112.2°
C6	C8	H16	90.0°	110.0°
C6	C8	H17	90.0°	109.7°
C6	C8	H18	90.0°	109.7°
C9	C6	C10	90.0°	110.8°
C6	C9	H19	90.0°	109.8°
C6	C9	H20	90.0°	109.7°
C6	C9	H21	90.0°	110.1°
C6	C10	H22	90.0°	110.0°
C6	C10	H23	90.0°	109.8°
C6	C10	H24	90.0°	109.9°
H13	C7	H14	90.0°	109.5°
H13	C7	H15	90.0°	109.6°
H14	C7	H15	90.0°	109.6°
H16	C8	H17	90.0°	109.4°
H16	C8	H18	90.0°	109.1°
H17	C8	H18	90.0°	108.9°
H19	C9	H20	90.0°	108.8°
H19	C9	H21	90.0°	109.3°
H20	C9	H21	90.0°	109.2°
H22	C10	H23	90.0°	109.0°
H22	C10	H24	90.0°	109.4°
H23	C10	H24	90.0°	108.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C43	C42	C40	N04	178.5°	179.9°
C43	C42	C40	N07	179.1°	180.0°
C43	C42	N04	C32	2.0°	0.1°
C43	C42	N04	C31	177.0°	180.0°
C43	C42	C40	H7	0.9°	0.1°
C42	C43	H8	H9	155.0°	118.4°
C42	C43	H8	C1	49.9°	124.7°
C42	C43	H9	C1	49.9°	125.7°
C42	C43	C1	C2	90.0°	70.6°
C42	C43	C1	N1	90.0°	165.8°
C42	C43	C1	H10	90.0°	47.4°
C42	C40	N07	H7	180.0°	179.9°
C42	C40	N07	C36	179.1°	179.9°
C42	C40	N07	C31	2.9°	0.0°
C40	C42	N04	C32	179.1°	180.0°
C40	C42	N04	C31	1.8°	0.0°
C40	C42	C43	H8	176.7°	40.7°
C40	C42	C43	H9	31.5°	156.9°
C40	C42	C43	C1	72.6°	80.5°
N07	C40	C42	N04	0.6°	0.1°
C40	N07	C36	C31	175.8°	180.0°
C40	N07	C31	N04	3.9°	0.0°
C40	N07	C31	RH01	176.8°	180.0°
C40	N07	C36	H4	180.0°	149.2°
C40	N07	C36	H5	60.0°	29.2°
C40	N07	C36	H6	60.0°	90.8°
C42	N04	C31	N07	3.4°	0.0°
C42	N04	C32	C31	178.9°	179.9°
C42	N04	C31	RH01	176.6°	180.0°
C42	N04	C32	H1	180.0°	164.3°
C42	N04	C32	H2	60.0°	44.2°
C42	N04	C32	H3	60.0°	75.8°
N04	C42	C40	H7	179.4°	180.0°
N04	C42	C43	H8	1.7°	139.2°
N04	C42	C43	H9	150.1°	23.0°
N04	C42	C43	C1	105.8°	99.6°
C36	N07	C31	N04	180.0°	180.0°
C36	N07	C31	RH01	7.0°	0.1°
N07	C36	H4	H5	120.0°	120.2°
N07	C36	H4	H6	120.0°	120.2°
N07	C36	H5	H6	120.0°	120.2°
C36	N07	C40	H7	0.9°	0.0°
N07	C31	N04	C32	177.6°	180.0°
N07	C31	N04	RH01	173.2°	180.0°
C31	N07	C36	H4	4.2°	30.8°
C31	N07	C36	H5	115.8°	150.8°
C31	N07	C36	H6	124.2°	89.2°
C31	N07	C40	H7	177.1°	180.0°
C32	N04	C31	RH01	4.4°	0.0°
N04	C32	H1	H2	120.0°	120.7°
N04	C32	H1	H3	120.0°	119.9°
N04	C32	H2	H3	120.0°	120.0°
C31	N04	C32	H1	1.1°	15.7°
C31	N04	C32	H2	121.1°	135.8°
C31	N04	C32	H3	118.9°	104.2°
H1	C32	H2	H3	120.0°	119.4°
H4	C36	H5	H6	120.0°	119.7°
H8	C43	H9	C1	155.1°	116.7°
H8	C43	C1	C2	90.0°	168.0°
H8	C43	C1	N1	90.0°	44.4°
H8	C43	C1	H10	90.0°	74.0°
H9	C43	C1	C2	90.0°	52.6°
H9	C43	C1	N1	90.0°	71.0°
H9	C43	C1	H10	90.0°	170.6°
C43	C1	C2	N1	90.0°	123.2°
C43	C1	C2	H10	90.0°	118.5°
C43	C1	N1	H10	90.0°	118.6°
C43	C1	N1	C4	90.0°	89.0°
C43	C1	C2	O2	90.0°	101.4°
C43	C1	C2	O1	90.0°	78.4°
C43	C1	N1	H12	90.0°	90.4°
C2	C1	N1	H10	90.0°	117.9°
C2	C1	N1	C4	90.0°	147.5°
C1	C2	O2	O1	90.0°	179.8°
C1	C2	O2	C7	90.0°	179.4°
C2	C1	N1	H12	90.0°	33.1°
C1	N1	C4	H12	90.0°	179.4°
N1	C1	C2	O2	90.0°	135.4°
N1	C1	C2	O1	90.0°	44.8°
C1	N1	C4	O3	90.0°	180.0°
C1	N1	C4	O4	90.0°	0.3°
N1	C4	O3	O4	90.0°	179.7°
N1	C4	O3	C6	90.0°	180.0°
C4	N1	C1	H10	90.0°	29.6°
O2	C2	C1	H10	90.0°	17.2°
C2	O2	C7	H13	90.0°	59.6°
C2	O2	C7	H14	90.0°	179.5°
C2	O2	C7	H15	90.0°	60.5°
O1	C2	O2	C7	90.0°	0.8°
O1	C2	C1	H10	90.0°	163.0°
O2	C7	H13	H14	90.0°	119.8°
O2	C7	H13	H15	90.0°	120.0°
O2	C7	H14	H15	90.0°	119.9°
C4	O3	C6	C8	90.0°	61.8°
C4	O3	C6	C9	90.0°	179.6°
C4	O3	C6	C10	90.0°	63.8°
O3	C4	N1	H12	90.0°	0.6°
O4	C4	O3	C6	90.0°	0.3°
O4	C4	N1	H12	90.0°	179.1°
O3	C6	C8	C9	90.0°	110.6°
O3	C6	C8	C10	90.0°	124.6°
O3	C6	C9	C10	90.0°	116.3°
O3	C6	C8	H16	90.0°	174.5°
O3	C6	C8	H17	90.0°	54.2°
O3	C6	C8	H18	90.0°	65.4°
O3	C6	C9	H19	90.0°	59.3°
O3	C6	C9	H20	90.0°	60.2°
O3	C6	C9	H21	90.0°	179.6°
O3	C6	C10	H22	90.0°	173.8°
O3	C6	C10	H23	90.0°	66.3°
O3	C6	C10	H24	90.0°	53.3°
C8	C6	C9	C10	90.0°	125.5°
C6	C8	H16	H17	90.0°	120.6°
C6	C8	H16	H18	90.0°	120.4°
C6	C8	H17	H18	90.0°	120.1°
C8	C6	C9	H19	90.0°	177.5°
C8	C6	C9	H20	90.0°	58.0°
C8	C6	C9	H21	90.0°	62.2°
C8	C6	C10	H22	90.0°	60.8°
C8	C6	C10	H23	90.0°	59.1°
C8	C6	C10	H24	90.0°	178.7°
C9	C6	C8	H16	90.0°	63.9°
C9	C6	C8	H17	90.0°	56.5°
C9	C6	C8	H18	90.0°	176.0°
C6	C9	H19	H20	90.0°	120.1°
C6	C9	H19	H21	90.0°	120.8°
C6	C9	H20	H21	90.0°	120.7°
C9	C6	C10	H22	90.0°	64.2°
C9	C6	C10	H23	90.0°	175.8°
C9	C6	C10	H24	90.0°	56.2°
C10	C6	C8	H16	90.0°	60.9°
C10	C6	C8	H17	90.0°	178.8°
C10	C6	C8	H18	90.0°	59.2°
C10	C6	C9	H19	90.0°	56.9°
C10	C6	C9	H20	90.0°	176.4°
C10	C6	C9	H21	90.0°	63.4°
C6	C10	H22	H23	90.0°	120.4°
C6	C10	H22	H24	90.0°	120.7°
C6	C10	H23	H24	90.0°	120.2°
H10	C1	N1	H12	90.0°	151.0°
H13	C7	H14	H15	90.0°	120.3°
H16	C8	H17	H18	90.0°	119.2°
H19	C9	H20	H21	90.0°	119.2°
H22	C10	H23	H24	90.0°	119.2°

Release date:	2020-12-16
Definition date:	2020-05-04
Last modified:	2026-07-31
Release status:	REL
Processing site:	RCSB
Derived from:	6WRM