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SummaryGeometryRelated PDB entries

U88

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N03C04sing1.32Å1.43ÅAromatic
N03C02doub1.29Å1.35ÅAromatic
C04C05doub1.34Å1.39ÅAromatic
C02S09sing1.71Å1.74ÅAromatic
C05S09sing1.76Å1.71ÅAromatic
C05N06sing1.48Å1.51Å
O07N06sing1.22Å1.22Å
N06O08doub1.22Å1.22Å
C02H1sing1.08Å1.08Å
C04H041sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C04N03C02110.8°117.1°
N03C04C05114.7°114.5°
N03C04H041122.6°122.8°
N03C02S09112.8°110.2°
N03C02H1123.6°124.9°
C04C05S09109.5°107.9°
C04C05N06129.0°126.0°
C05C04H041122.7°122.7°
C02S09C0592.2°90.3°
S09C02H1123.6°124.9°
S09C05N06121.5°126.1°
C05N06O07118.2°120.0°
C05N06O08118.4°120.0°
O07N06O08123.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N03C04C05H041180.0°179.4°
C04N03C02S090.4°0.0°
N03C04C05S090.1°0.6°
N03C04C05N06179.9°179.5°
C04N03C02H1179.6°179.7°
C02N03C04C050.2°0.4°
N03C02S09H1180.0°179.7°
N03C02S09C050.4°0.3°
C02N03C04H041179.8°179.8°
C04C05S09C020.3°0.5°
C04C05S09N06180.0°179.9°
C04C05N06O0719.6°180.0°
C04C05N06O08160.6°0.0°
C02S09C05N06179.8°179.6°
S09C05N06O07160.5°0.1°
S09C05N06O0819.3°179.9°
C05S09C02H1179.6°180.0°
S09C05C04H041179.9°180.0°
C05N06O07O08179.8°180.0°
N06C05C04H0410.1°0.1°

247947

PDB entries from 2026-01-21

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