Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

U87

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N6C6sing1.38Å1.36Å
C6N1doub1.33Å1.36ÅAromatic
C6C5sing1.41Å1.39ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
N7C5sing1.35Å1.34ÅAromatic
N7C8doub1.30Å1.35ÅAromatic
C5C4doub1.40Å1.39ÅAromatic
C2N3doub1.32Å1.34ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
C4N3sing1.33Å1.34ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
N9C1'sing1.47Å1.48Å
C1'O4sing1.44Å1.42Å
C1'C2'sing1.54Å1.51Å
O4C4'sing1.44Å1.44Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.54Å1.51Å
C4'C3'sing1.55Å1.52Å
C4'C5'sing1.53Å1.53Å
C3'O3'sing1.43Å1.44Å
C5'NDsing1.47Å1.48Å
C15N10sing1.47Å1.48Å
C15C14sing1.53Å1.53Å
N10C16sing1.47Å1.47Å
C12C11sing1.53Å1.52Å
C12C13sing1.53Å1.52Å
C16C17sing1.51Å1.53Å
NDC11sing1.47Å1.48Å
NDCGsing1.47Å1.49Å
C13C14sing1.53Å1.52Å
C14C18sing1.51Å1.52Å
CGCBsing1.53Å1.54Å
C17C18doub1.38Å1.52ÅAromatic
C17C22sing1.39Å1.50ÅAromatic
C18C19sing1.39Å1.51ÅAromatic
CL2C22sing1.74Å1.77Å
CBCAsing1.53Å1.53Å
C22C21doub1.38Å1.35ÅAromatic
C19C20doub1.38Å1.33ÅAromatic
NCAsing1.47Å1.48Å
CACsing1.51Å1.50Å
C21C20sing1.38Å1.48ÅAromatic
C21CL1sing1.74Å1.77Å
CO1doub1.21Å1.26Å
COsing1.34Å1.26Å
NH1sing1.01Å1.00Å
NH2sing1.01Å1.00Å
OH4sing0.97Å0.95Å
C2H5sing1.08Å1.08Å
C8H6sing1.08Å1.08Å
C11H7sing1.09Å1.10Å
C11H8sing1.09Å1.10Å
C12H9sing1.09Å1.10Å
C12H10sing1.09Å1.10Å
C13H11sing1.09Å1.10Å
C13H12sing1.09Å1.10Å
CAH13sing1.09Å1.10Å
CBH14sing1.09Å1.10Å
CBH15sing1.09Å1.10Å
CGH16sing1.09Å1.10Å
CGH17sing1.09Å1.10Å
C1'H19sing1.09Å1.10Å
C14H20sing1.09Å1.10Å
C15H21sing1.09Å1.10Å
C15H22sing1.09Å1.10Å
C16H23sing1.09Å1.10Å
C16H24sing1.09Å1.10Å
C19H27sing1.08Å1.08Å
C2'H29sing1.09Å1.10Å
C20H30sing1.08Å1.08Å
C3'H32sing1.09Å1.10Å
C4'H33sing1.09Å1.10Å
C5'H34sing1.09Å1.10Å
C5'H35sing1.09Å1.10Å
N10H36sing1.01Å1.00Å
N6H38sing0.97Å1.00Å
N6H39sing0.97Å1.00Å
O2'H40sing0.97Å0.95Å
O3'H41sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N6C6N1120.8°120.8°
N6C6C5121.2°120.7°
C6N6H38109.5°120.0°
C6N6H39109.4°120.0°
N1C6C5118.1°118.5°
C6N1C2120.3°121.2°
C6C5N7132.5°134.7°
C6C5C4119.8°118.1°
N1C2N3122.5°122.5°
N1C2H5118.8°118.8°
C5N7C8107.0°109.4°
N7C5C4107.7°107.2°
N7C8N9109.9°110.0°
N7C8H6125.1°125.0°
C5C4N3119.9°119.1°
C5C4N9107.9°106.0°
C2N3C4119.4°120.6°
N3C2H5118.7°118.8°
C8N9C4107.5°107.4°
C8N9C1'125.3°126.3°
N9C8H6125.1°125.0°
N3C4N9132.2°134.9°
C4N9C1'127.2°126.2°
N9C1'O4109.6°110.3°
N9C1'C2'108.0°110.3°
N9C1'H19111.8°110.5°
O4C1'C2'102.5°104.8°
C1'O4C4'108.6°105.3°
O4C1'H19112.9°110.4°
C1'C2'O2'111.7°110.5°
C1'C2'C3'104.0°104.1°
C2'C1'H19111.4°110.4°
C1'C2'H29109.1°110.5°
O4C4'C3'106.3°104.8°
O4C4'C5'113.6°110.4°
O4C4'H33108.6°110.5°
O2'C2'C3'112.5°110.5°
O2'C2'H29110.3°110.5°
C2'O2'H40109.5°114.0°
C2'C3'C4'103.9°104.1°
C2'C3'O3'110.0°110.5°
C3'C2'H29109.0°110.6°
C2'C3'H32110.3°110.6°
C3'C4'C5'113.0°110.4°
C4'C3'O3'110.7°110.5°
C4'C3'H32110.2°110.6°
C3'C4'H33107.6°110.3°
C4'C5'ND108.3°109.5°
C5'C4'H33107.5°110.4°
C4'C5'H34109.7°109.5°
C4'C5'H35109.8°109.5°
O3'C3'H32111.4°110.4°
C3'O3'H41109.5°114.0°
C5'NDC11112.3°110.9°
C5'NDCG113.6°111.0°
NDC5'H34109.7°109.4°
NDC5'H35109.8°109.4°
N10C15C14108.5°108.5°
C15N10C16109.8°110.2°
N10C15H21109.7°109.6°
N10C15H22109.7°109.7°
C15N10H36109.4°111.1°
C15C14C13112.1°109.4°
C15C14C18109.5°110.0°
C15C14H20108.5°109.3°
C14C15H21109.7°109.6°
C14C15H22109.7°109.7°
N10C16C17108.8°110.5°
N10C16H23109.7°109.3°
N10C16H24109.6°109.1°
C16N10H36109.4°111.0°
C11C12C13112.6°109.5°
C12C11ND111.1°109.5°
C12C11H7109.1°109.4°
C12C11H8109.1°109.4°
C11C12H9108.7°109.5°
C11C12H10108.7°109.5°
C12C13C14113.3°109.5°
C13C12H9108.7°109.4°
C13C12H10108.7°109.5°
C12C13H11108.5°109.4°
C12C13H12108.5°109.5°
C16C17C18112.5°121.9°
C16C17C22111.0°118.4°
C17C16H23109.6°109.3°
C17C16H24109.6°109.3°
C11NDCG111.2°111.1°
NDC11H7109.1°109.5°
NDC11H8109.0°109.5°
NDCGCB105.5°109.5°
NDCGH16110.5°109.4°
NDCGH17110.5°109.4°
C13C14C18109.5°109.4°
C14C13H11108.5°109.4°
C14C13H12108.5°109.5°
C13C14H20108.5°109.4°
C14C18C17113.9°121.7°
C14C18C19110.5°118.4°
C18C14H20108.6°109.4°
CGCBCA118.3°109.5°
CGCBH14107.2°109.5°
CGCBH15107.2°109.4°
CBCGH16110.5°109.5°
CBCGH17110.4°109.5°
C18C17C22104.9°119.8°
C17C18C19106.7°119.9°
C17C22CL2117.4°119.8°
C17C22C21118.1°120.3°
C18C19C20117.2°120.3°
C18C19H27121.4°119.8°
CL2C22C21124.4°119.8°
CBCAN112.8°109.4°
CBCAC110.1°109.5°
CBCAH13108.1°109.5°
CACBH14107.2°109.5°
CACBH15107.2°109.4°
C22C21C20118.5°119.8°
C22C21CL1125.3°120.1°
C19C20C21118.8°119.9°
C20C19H27121.4°119.8°
C19C20H30120.6°120.1°
NCAC108.4°109.5°
CANH1109.5°111.0°
CANH2109.5°111.0°
NCAH13108.8°109.4°
CACO1117.7°120.0°
CACO118.1°120.0°
CCAH13108.5°109.5°
C20C21CL1116.1°120.1°
C21C20H30120.6°120.1°
O1CO124.2°120.0°
COH4109.5°117.0°
H1NH2109.5°111.0°
H7C11H8109.4°109.5°
H9C12H10109.5°109.4°
H11C13H12109.5°109.4°
H14CBH15109.5°109.5°
H16CGH17109.5°109.5°
H21C15H22109.5°109.8°
H23C16H24109.5°109.3°
H34C5'H35109.5°109.5°
H38N6H39109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N6C6N1C5179.8°180.0°
N6C6N1C2179.8°180.0°
N6C6C5N70.3°0.1°
N6C6C5C4179.7°180.0°
C6N6H38H39120.0°179.9°
N1C6C5N7179.9°180.0°
N1C6C5C40.5°0.1°
C6N1C2N30.0°0.0°
C6N1C2H5180.0°180.0°
N1C6N6H380.0°0.0°
N1C6N6H39120.0°180.0°
C5C6N1C20.4°0.0°
C6C5N7C4179.5°179.9°
C6C5N7C8179.6°180.0°
C6C5C4N30.1°0.1°
C6C5C4N9179.7°180.0°
C5C6N6H38179.8°179.9°
C5C6N6H3960.2°0.0°
N1C2N3H5180.0°180.0°
N1C2N3C40.3°0.1°
C5N7C8N90.0°0.0°
N7C5C4N3179.7°180.0°
N7C5C4N90.2°0.1°
C5N7C8H6179.9°179.9°
C8N7C5C40.1°0.1°
N7C8N9H6180.0°179.9°
N7C8N9C40.1°0.0°
N7C8N9C1'180.0°179.9°
C5C4N3C20.2°0.1°
C5C4N9C80.1°0.1°
C5C4N3N9179.8°179.9°
C5C4N9C1'180.0°180.0°
C2N3C4N9179.9°180.0°
C8N9C4N3179.7°179.9°
C8N9C4C1'179.9°179.9°
C8N9C1'O488.6°25.1°
C8N9C1'C2'22.5°90.2°
C8N9C1'H19145.5°147.5°
N3C4N9C1'0.2°0.2°
C4N3C2H5179.7°180.0°
C4N9C1'O491.3°154.8°
C4N9C1'C2'157.6°89.9°
C4N9C8H6180.0°180.0°
C4N9C1'H1934.7°32.4°
N9C1'O4C2'114.6°118.7°
N9C1'O4H19125.4°122.4°
N9C1'C2'H19123.2°122.3°
N9C1'O4C4'151.8°159.3°
N9C1'C2'O2'85.7°98.6°
N9C1'C2'C3'152.7°142.8°
C1'N9C8H60.1°0.1°
N9C1'C2'H2936.4°24.0°
O4C1'C2'H19121.0°118.9°
O4C1'C2'O2'158.5°142.6°
O4C1'C2'C3'36.9°24.0°
C1'O4C4'C3'22.6°40.6°
C1'O4C4'C5'147.5°159.4°
O4C1'C2'H2979.3°94.7°
C1'O4C4'H3392.9°78.3°
C2'C1'O4C4'37.2°40.6°
C1'C2'O2'C3'116.6°114.6°
C1'C2'O2'H29121.4°122.7°
C1'C2'C3'H29116.3°118.7°
C1'C2'C3'C4'23.3°0.0°
C1'C2'C3'O3'95.3°118.6°
C1'C2'C3'H32141.4°118.8°
C1'C2'O2'H40180.0°180.0°
O4C4'C3'C2'1.6°24.0°
O4C4'C3'C5'125.3°118.8°
O4C4'C3'H33116.2°118.9°
O4C4'C5'H33120.2°122.5°
O4C4'C3'O3'116.4°142.7°
O4C4'C5'ND165.7°65.6°
C4'O4C1'H1982.8°78.3°
O4C4'C3'H32119.8°94.8°
O4C4'C5'H3474.5°54.4°
O4C4'C5'H3545.9°174.4°
O2'C2'C3'H29122.7°122.6°
O2'C2'C3'C4'144.3°118.6°
O2'C2'C3'O3'25.8°0.0°
O2'C2'C1'H1937.5°23.7°
O2'C2'C3'H3297.6°122.6°
C2'C3'C4'O3'118.1°118.7°
C2'C3'C4'H32118.2°118.8°
C2'C3'C4'C5'123.6°142.8°
C2'C3'O3'H32122.7°122.6°
C3'C2'C1'H1984.1°94.9°
C2'C3'C4'H33117.9°94.9°
C3'C2'O2'H4063.4°65.4°
C2'C3'O3'H41180.0°61.4°
C3'C4'C5'H33118.6°122.2°
C4'C3'O3'H32123.1°122.7°
C3'C4'C5'ND73.1°179.1°
C4'C3'C2'H2993.0°118.7°
C3'C4'C5'H3446.8°61.0°
C3'C4'C5'H35167.1°59.1°
C4'C3'O3'H4165.8°176.1°
C5'C4'C3'O3'118.3°98.5°
C4'C5'NDH34119.8°120.0°
C4'C5'NDH35119.8°120.1°
C4'C5'NDC11139.1°75.9°
C4'C5'NDCG93.6°160.1°
C5'C4'C3'H325.5°24.1°
C4'C5'H34H35120.5°120.1°
O3'C3'C2'H29148.5°122.6°
O3'C3'C4'H330.2°23.7°
C5'NDC11C1250.3°170.0°
C5'NDC11CG128.6°124.0°
C5'NDCGCB154.8°72.0°
C5'NDC11H770.0°70.1°
C5'NDC11H8170.5°50.0°
C5'NDCGH1685.9°48.0°
C5'NDCGH1735.4°168.0°
NDC5'C4'H3345.5°56.9°
NDC5'H34H35120.5°119.9°
N10C15C14H21119.9°119.6°
N10C15C14H22119.9°119.7°
C15N10C16H36120.0°123.5°
C15N10C16C1751.7°52.5°
N10C15C14C13150.7°170.6°
N10C15C14C1828.9°50.4°
N10C15C14H2089.4°69.7°
N10C15H21H22120.5°120.5°
C15N10C16H23171.6°67.8°
C15N10C16H2468.2°172.7°
C14C15N10C1676.0°71.3°
C15C14C13C1272.2°64.5°
C15C14C13C18121.8°120.5°
C15C14C13H20119.8°119.7°
C15C14C18H20118.3°120.1°
C15C14C18C1732.1°16.7°
C15C14C18C19152.1°163.3°
C15C14C13H1148.3°55.5°
C15C14C13H12167.2°175.5°
C14C15H21H22120.4°120.5°
C14C15N10H3644.0°52.1°
N10C16C17H23119.9°120.3°
N10C16C17H24119.9°120.1°
N10C16C17C1811.2°17.5°
N10C16C17C22128.4°162.6°
C16N10C15H2143.9°169.0°
C16N10C15H22164.2°48.4°
N10C16H23H24120.3°119.4°
C11C12C13H9120.5°120.0°
C11C12C13H10120.5°120.0°
C12C11NDH7120.3°119.9°
C12C11NDH8120.3°120.0°
C12C11NDCG78.3°66.0°
C11C12C13C14105.6°180.0°
C12C11H7H8119.2°119.9°
C11C12H9H10118.6°120.0°
C11C12C13H11133.8°60.0°
C11C12C13H1214.9°60.0°
C13C12C11ND113.9°180.0°
C12C13C14H11120.6°120.0°
C12C13C14H12120.5°120.0°
C12C13C14C18166.0°175.0°
C13C12C11H7125.8°60.0°
C13C12C11H86.4°60.0°
C13C12H9H10118.5°119.9°
C12C13H11H12118.3°120.0°
C12C13C14H2047.6°55.2°
C16C17C18C1455.1°0.2°
C16C17C18C22120.7°180.0°
C16C17C18C19177.2°179.8°
C16C17C22CL22.2°0.2°
C16C17C22C21174.1°179.9°
C17C16H23H24120.3°119.6°
C17C16N10H3668.3°70.9°
C11NDCGCB77.4°164.1°
NDC11H7H8119.2°120.1°
NDC11C12H9125.6°60.0°
NDC11C12H106.6°60.0°
C11NDCGH1642.0°75.9°
C11NDCGH17163.2°44.0°
C11NDC5'H3419.3°164.1°
C11NDC5'H35101.1°44.1°
NDCGCBH16119.4°120.0°
NDCGCBH17119.4°120.0°
NDCGCBCA160.1°174.7°
CGNDC11H7161.4°53.9°
CGNDC11H842.0°174.0°
NDCGCBH1438.9°54.7°
NDCGCBH1578.6°65.3°
NDCGH16H17121.9°119.9°
CGNDC5'H34146.6°40.1°
CGNDC5'H3526.2°79.9°
C13C14C18H20118.3°119.8°
C13C14C18C1791.3°136.9°
C13C14C18C1928.7°43.1°
C14C13C12H914.9°60.0°
C14C13C12H10133.9°59.9°
C14C13H11H12118.2°120.0°
C13C14C15H2130.9°69.8°
C13C14C15H2289.4°50.8°
C14C18C17C19122.1°180.0°
C14C18C17C22175.9°179.8°
C14C18C19C20178.5°179.8°
C18C14C13H1173.5°65.0°
C18C14C13H1245.4°55.0°
C18C14C15H2190.9°170.0°
C18C14C15H22148.8°69.4°
C14C18C19H271.5°0.1°
CGCBCAH14121.3°120.0°
CGCBCAH15121.3°119.9°
CGCBCAN21.3°65.7°
CGCBCAC100.0°174.2°
CGCBCAH13141.7°54.2°
CGCBH14H15116.0°120.0°
CBCGH16H17121.8°120.1°
C18C17C22CL2123.9°179.9°
C18C17C22C2152.4°0.1°
C17C18C19C2054.3°0.2°
C17C18C14H20150.4°103.3°
C18C17C16H23108.7°102.8°
C18C17C16H24131.1°137.5°
C17C18C19H27125.7°179.9°
C22C17C18C1962.0°0.2°
C17C22CL2C21176.1°180.0°
C17C22C21C2026.8°0.0°
C17C22C21CL1155.0°180.0°
C22C17C16H238.5°77.1°
C22C17C16H24111.7°42.5°
C18C19C20H27180.0°179.9°
C18C19C20C2127.7°0.0°
C19C18C14H2089.6°76.7°
C18C19C20H30152.2°180.0°
CL2C22C21C20149.3°180.0°
CL2C22C21CL129.0°0.0°
CBCANC122.2°120.0°
CBCANH13120.0°120.0°
CBCACH13118.1°120.0°
CBCACO1133.4°101.6°
CBCACO47.5°78.1°
CBCANH1180.0°176.0°
CBCANH260.0°60.0°
CACBH14H15115.9°120.0°
CACBCGH1680.5°65.3°
CACBCGH1740.8°54.8°
C22C21C20C1912.6°0.0°
C22C21C20CL1178.4°180.0°
C22C21C20H30167.3°179.9°
C19C20C21H30180.0°180.0°
C19C20C21CL1169.0°179.9°
NCACH13118.0°120.0°
NCACO19.5°18.4°
NCACO171.4°161.9°
CANH1H2120.0°124.0°
NCACBH14100.0°54.3°
NCACBH15142.6°174.3°
CACO1O179.0°179.7°
CCANH157.7°63.9°
CCANH262.3°60.0°
CACOH4179.0°174.7°
CCACBH14138.7°65.7°
CCACBH1521.3°54.3°
C21C20C19H27152.3°180.0°
CL1C21C20H3011.0°0.1°
O1COH40.0°5.0°
O1CCAH13108.5°138.4°
OCCAH1370.6°41.9°
H1NCAH1360.0°56.0°
H2NCAH13179.9°180.0°
H7C11C12H95.4°60.0°
H7C11C12H10113.7°180.0°
H8C11C12H9114.1°180.0°
H8C11C12H10126.8°60.0°
H9C12C13H11105.7°180.0°
H9C12C13H12135.4°60.1°
H10C12C13H1113.3°60.1°
H10C12C13H12105.6°180.0°
H11C13C14H20168.2°175.2°
H12C13C14H2072.9°64.8°
H13CACBH1420.4°174.2°
H13CACBH1597.1°65.7°
H14CBCGH16158.3°174.7°
H14CBCGH1780.5°65.2°
H15CBCGH1640.8°54.7°
H15CBCGH17162.0°174.7°
H19C1'C2'H29159.7°146.3°
H20C14C15H21150.7°49.9°
H20C14C15H2230.4°170.5°
H21C15N10H36163.9°67.6°
H22C15N10H3675.8°171.8°
H23C16N10H3651.6°168.8°
H24C16N10H36171.8°49.3°
H27C19C20H3027.8°0.0°
H29C2'C3'H3225.1°0.1°
H29C2'O2'H4058.6°57.3°
H32C3'C4'H33124.0°146.3°
H32C3'O3'H4157.3°61.2°
H33C4'C5'H34165.3°176.8°
H33C4'C5'H3574.3°63.1°

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon