U7B

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.48Å
P	O5'	sing	1.61Å	1.62Å
P	OP2	sing	1.61Å	1.48Å
C5'	C4'	sing	1.53Å	1.54Å
C5'	O5'	sing	1.43Å	1.42Å
O4'	C4'	sing	1.45Å	1.43Å
O4'	C1'	sing	1.44Å	1.42Å
C4'	C3'	sing	1.54Å	1.54Å
C1'	N1	sing	1.46Å	1.50Å
C1'	C2'	sing	1.54Å	1.55Å
N1	C6	sing	1.36Å	1.37Å
N1	C2	sing	1.35Å	1.39Å
O2	C2	doub	1.22Å	1.23Å
C6	C5	doub	1.35Å	1.36Å
C2	N3	sing	1.33Å	1.35Å
C5	C4	sing	1.41Å	1.41Å
N3	C4	doub	1.33Å	1.31Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.54Å	1.55Å
C4	N4	sing	1.38Å	1.31Å
C2'	F1	sing	1.40Å	1.38Å
C2'	F2	sing	1.40Å	1.38Å
C5'	H5''	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H1	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
N4	H42	sing	0.97Å	1.00Å
N4	H41	sing	0.97Å	1.00Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
OP2	H3	sing	0.97Å	0.95Å
P	OP3	sing	1.61Å	1.62Å
OP3	H2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	O5'	108.1°	109.5°
OP1	P	OP2	119.7°	109.5°
OP1	P	OP3	108.4°	109.5°
O5'	P	OP2	109.2°	109.5°
P	O5'	C5'	121.0°	123.0°
O5'	P	OP3	101.0°	109.5°
P	OP2	H3	109.5°	114.0°
OP2	P	OP3	108.8°	109.5°
C4'	C5'	O5'	112.9°	109.5°
C5'	C4'	O4'	113.1°	110.4°
C5'	C4'	C3'	114.6°	110.4°
C4'	C5'	H5''	108.6°	109.4°
C4'	C5'	H5'	108.6°	109.4°
C5'	C4'	H4'	107.0°	110.3°
O5'	C5'	H5''	108.6°	109.5°
O5'	C5'	H5'	108.6°	109.5°
C4'	O4'	C1'	105.9°	105.3°
O4'	C4'	C3'	106.7°	104.8°
O4'	C4'	H4'	108.3°	110.4°
O4'	C1'	N1	113.1°	110.4°
O4'	C1'	C2'	104.0°	104.8°
O4'	C1'	H1'	109.3°	110.4°
C4'	C3'	O3'	112.2°	110.5°
C4'	C3'	C2'	99.8°	104.1°
C3'	C4'	H4'	106.9°	110.4°
C4'	C3'	H3'	108.8°	110.5°
N1	C1'	C2'	114.3°	110.4°
C1'	N1	C6	121.5°	119.8°
C1'	N1	C2	118.9°	119.9°
N1	C1'	H1'	108.2°	110.4°
C1'	C2'	C3'	107.2°	104.1°
C1'	C2'	F1	106.6°	110.5°
C1'	C2'	F2	110.9°	110.6°
C2'	C1'	H1'	107.7°	110.5°
C6	N1	C2	119.3°	120.3°
N1	C6	C5	120.7°	119.3°
N1	C6	H6	119.7°	120.3°
N1	C2	O2	121.8°	119.4°
N1	C2	N3	120.8°	121.1°
O2	C2	N3	117.5°	119.5°
C6	C5	C4	117.2°	119.0°
C6	C5	H5	121.4°	120.6°
C5	C6	H6	119.7°	120.4°
C2	N3	C4	119.0°	120.7°
C5	C4	N3	123.1°	119.6°
C5	C4	N4	120.7°	120.2°
C4	C5	H5	121.4°	120.5°
N3	C4	N4	116.2°	120.2°
O3'	C3'	C2'	116.5°	110.5°
O3'	C3'	H3'	110.3°	110.4°
C3'	O3'	H1	109.5°	114.0°
C3'	C2'	F1	113.7°	110.5°
C3'	C2'	F2	108.4°	110.5°
C2'	C3'	H3'	108.7°	110.6°
C4	N4	H42	120.0°	120.0°
C4	N4	H41	120.0°	120.0°
F1	C2'	F2	110.1°	110.4°
H5''	C5'	H5'	109.5°	109.5°
H42	N4	H41	120.0°	120.0°
P	OP3	H2	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	O5'	OP2	131.8°	120.0°
OP1	P	O5'	OP3	113.7°	120.0°
OP1	P	OP2	OP3	125.3°	120.0°
OP1	P	O5'	C5'	37.3°	55.0°
OP1	P	OP2	H3	0.0°	60.0°
OP1	P	OP3	H2	0.0°	180.0°
O5'	P	OP2	OP3	109.4°	120.0°
P	O5'	C5'	C4'	169.0°	180.0°
P	O5'	C5'	H5''	48.5°	60.0°
P	O5'	C5'	H5'	70.5°	60.0°
O5'	P	OP2	H3	125.3°	180.0°
O5'	P	OP3	H2	113.4°	60.0°
OP2	P	O5'	C5'	169.1°	175.0°
OP2	P	OP3	H2	131.7°	60.0°
C4'	C5'	O5'	H5''	120.5°	120.0°
C4'	C5'	O5'	H5'	120.5°	120.0°
C5'	C4'	O4'	C3'	126.8°	118.9°
C5'	C4'	O4'	H4'	118.3°	122.3°
C5'	C4'	O4'	C1'	169.5°	159.4°
C5'	C4'	C3'	H4'	118.3°	122.3°
C5'	C4'	C3'	O3'	80.6°	98.5°
C5'	C4'	C3'	C2'	155.3°	142.8°
C4'	C5'	H5''	H5'	118.5°	119.9°
C5'	C4'	C3'	H3'	41.6°	24.0°
O5'	C5'	C4'	O4'	64.4°	69.6°
O5'	C5'	C4'	C3'	58.2°	175.0°
O5'	C5'	H5''	H5'	118.5°	120.1°
O5'	C5'	C4'	H4'	176.5°	52.7°
C5'	O5'	P	OP3	76.4°	65.0°
O4'	C4'	C3'	H4'	115.7°	118.9°
C4'	O4'	C1'	N1	160.6°	159.3°
C4'	O4'	C1'	C2'	36.0°	40.5°
O4'	C4'	C3'	O3'	153.4°	142.6°
O4'	C4'	C3'	C2'	29.4°	23.9°
O4'	C4'	C5'	H5''	56.1°	50.4°
O4'	C4'	C5'	H5'	175.1°	170.3°
O4'	C4'	C3'	H3'	84.3°	94.8°
C4'	O4'	C1'	H1'	78.8°	78.4°
C1'	O4'	C4'	C3'	42.7°	40.5°
O4'	C1'	N1	C2'	118.8°	115.3°
O4'	C1'	N1	H1'	121.2°	122.3°
O4'	C1'	C2'	H1'	115.9°	118.9°
O4'	C1'	N1	C6	35.3°	126.5°
O4'	C1'	N1	C2	150.8°	53.8°
O4'	C1'	C2'	C3'	16.6°	24.0°
O4'	C1'	C2'	F1	138.6°	142.6°
O4'	C1'	C2'	F2	101.5°	94.7°
C1'	O4'	C4'	H4'	72.1°	78.4°
C4'	C3'	C2'	C1'	7.4°	0.0°
C4'	C3'	O3'	C2'	114.2°	114.7°
C4'	C3'	O3'	H3'	121.4°	122.6°
C4'	C3'	C2'	H3'	113.8°	118.7°
C4'	C3'	C2'	F1	110.1°	118.7°
C4'	C3'	C2'	F2	127.1°	118.8°
C3'	C4'	C5'	H5''	178.7°	65.0°
C3'	C4'	C5'	H5'	62.3°	55.0°
C4'	C3'	O3'	H1	180.0°	179.9°
N1	C1'	C2'	H1'	120.2°	122.3°
C1'	N1	C6	C2	173.8°	179.8°
C1'	N1	C2	O2	3.1°	0.0°
C1'	N1	C6	C5	175.9°	179.8°
C1'	N1	C2	N3	177.0°	180.0°
N1	C1'	C2'	C3'	140.4°	142.8°
N1	C1'	C2'	F1	97.5°	98.6°
N1	C1'	C2'	F2	22.4°	24.1°
C1'	N1	C6	H6	4.1°	0.0°
C2'	C1'	N1	C6	83.5°	118.2°
C2'	C1'	N1	C2	90.3°	61.5°
C1'	C2'	C3'	O3'	128.3°	118.6°
C1'	C2'	C3'	F1	117.5°	118.6°
C1'	C2'	C3'	F2	119.7°	118.8°
C1'	C2'	F1	F2	120.4°	122.8°
C1'	C2'	C3'	H3'	106.4°	118.7°
C6	N1	C2	O2	177.1°	179.8°
N1	C6	C5	H6	180.0°	179.8°
C6	N1	C2	N3	3.0°	0.2°
N1	C6	C5	C4	0.5°	0.5°
C6	N1	C1'	H1'	156.5°	4.2°
N1	C6	C5	H5	179.5°	179.7°
N1	C2	O2	N3	179.9°	180.0°
C2	N1	C6	C5	2.1°	0.5°
N1	C2	N3	C4	2.3°	0.0°
C2	N1	C1'	H1'	29.6°	176.1°
C2	N1	C6	H6	178.0°	179.7°
O2	C2	N3	C4	177.8°	180.0°
C6	C5	C4	H5	180.0°	179.8°
C6	C5	C4	N3	0.3°	0.3°
C6	C5	C4	N4	179.1°	179.7°
C2	N3	C4	C5	0.6°	0.0°
C2	N3	C4	N4	179.9°	180.0°
C5	C4	N3	N4	179.4°	180.0°
C5	C4	N4	H42	179.4°	180.0°
C5	C4	N4	H41	0.6°	0.0°
C4	C5	C6	H6	179.5°	179.7°
N3	C4	N4	H42	0.0°	0.0°
N3	C4	N4	H41	180.0°	180.0°
N3	C4	C5	H5	179.7°	180.0°
O3'	C3'	C2'	H3'	125.2°	122.6°
O3'	C3'	C2'	F1	10.9°	0.0°
O3'	C3'	C2'	F2	111.9°	122.5°
O3'	C3'	C4'	H4'	37.7°	23.7°
C3'	C2'	F1	F2	121.8°	122.6°
C2'	C3'	C4'	H4'	86.4°	94.9°
C2'	C3'	O3'	H1	65.8°	65.4°
C3'	C2'	C1'	H1'	99.3°	94.9°
C4	N4	H42	H41	180.0°	179.9°
N4	C4	C5	H5	0.9°	0.0°
F1	C2'	C3'	H3'	136.1°	122.6°
F1	C2'	C1'	H1'	22.7°	23.8°
F2	C2'	C3'	H3'	13.3°	0.1°
F2	C2'	C1'	H1'	142.6°	146.4°
H5''	C5'	C4'	H4'	63.0°	172.7°
H5'	C5'	C4'	H4'	56.0°	67.4°
H4'	C4'	C3'	H3'	160.0°	146.3°
H3'	C3'	O3'	H1	58.6°	57.3°
H5	C5	C6	H6	0.4°	0.0°
H3	OP2	P	OP3	125.3°	60.1°

Release date:	2021-04-07
Definition date:	2021-01-27
Last modified:	2021-04-02
Release status:	REL
Processing site:	PDBE
Derived from:	7NBK