U6M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C7 | C6 | sing | 1.51Å | 1.51Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.44Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| O4 | C4 | doub | 1.22Å | 1.26Å | |
| C4 | N3 | sing | 1.35Å | 1.34Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| C1' | C2' | sing | 1.55Å | 1.50Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| N3 | C2 | sing | 1.35Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| O3P | P | doub | 1.48Å | 1.49Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | O1P | sing | 1.61Å | 1.49Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| N3 | H1 | sing | 0.97Å | 1.00Å | |
| C5 | H2 | sing | 1.08Å | 1.08Å | |
| C7 | H5 | sing | 1.09Å | 1.10Å | |
| C7 | H6 | sing | 1.09Å | 1.10Å | |
| C7 | H7 | sing | 1.09Å | 1.10Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| C4' | H13 | sing | 1.09Å | 1.10Å | |
| C5' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| O1P | H16 | sing | 0.97Å | 0.95Å | |
| O2P | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C7 | C6 | C5 | 118.3° | 120.2° |
| C7 | C6 | N1 | 122.4° | 120.2° |
| C6 | C7 | H5 | 109.5° | 109.4° |
| C6 | C7 | H6 | 109.5° | 109.5° |
| C6 | C7 | H7 | 109.4° | 109.5° |
| C5 | C6 | N1 | 116.7° | 119.7° |
| C6 | C5 | C4 | 121.1° | 119.1° |
| C6 | C5 | H2 | 119.4° | 120.4° |
| C6 | N1 | C1' | 121.2° | 119.7° |
| C6 | N1 | C2 | 117.1° | 120.7° |
| C5 | C4 | O4 | 121.3° | 120.3° |
| C5 | C4 | N3 | 119.3° | 119.4° |
| C4 | C5 | H2 | 119.4° | 120.5° |
| C1' | O4' | C4' | 109.0° | 106.9° |
| O4' | C1' | N1 | 105.4° | 110.6° |
| O4' | C1' | C2' | 105.8° | 103.5° |
| O4' | C1' | H8 | 109.9° | 110.7° |
| O4' | C4' | C5' | 107.7° | 109.9° |
| O4' | C4' | C3' | 106.0° | 107.3° |
| O4' | C4' | H13 | 110.2° | 109.9° |
| O4 | C4 | N3 | 116.6° | 120.3° |
| C4 | N3 | C2 | 120.7° | 120.3° |
| C4 | N3 | H1 | 119.7° | 119.9° |
| C1' | N1 | C2 | 121.3° | 119.7° |
| N1 | C1' | C2' | 116.7° | 110.6° |
| N1 | C1' | H8 | 109.5° | 110.6° |
| N1 | C2 | N3 | 121.7° | 120.9° |
| N1 | C2 | O2 | 119.6° | 119.6° |
| C1' | C2' | C3' | 102.3° | 102.1° |
| C1' | C2' | O2' | 107.6° | 110.9° |
| C2' | C1' | H8 | 109.3° | 110.7° |
| C1' | C2' | H9 | 111.5° | 110.9° |
| C5' | C4' | C3' | 114.4° | 109.9° |
| C4' | C5' | O5' | 103.8° | 109.5° |
| C5' | C4' | H13 | 109.1° | 109.9° |
| C4' | C5' | H14 | 110.9° | 109.4° |
| C4' | C5' | H15 | 110.9° | 109.5° |
| C4' | C3' | O3' | 107.2° | 110.6° |
| C4' | C3' | C2' | 102.8° | 104.2° |
| C4' | C3' | H11 | 111.9° | 110.5° |
| C3' | C4' | H13 | 109.3° | 110.0° |
| N3 | C2 | O2 | 118.6° | 119.5° |
| C2 | N3 | H1 | 119.7° | 119.8° |
| O3' | C3' | C2' | 109.2° | 110.5° |
| O3' | C3' | H11 | 113.1° | 110.4° |
| C3' | O3' | H12 | 109.5° | 113.9° |
| C5' | O5' | P | 120.5° | 123.0° |
| O5' | C5' | H14 | 110.9° | 109.5° |
| O5' | C5' | H15 | 110.9° | 109.5° |
| C3' | C2' | O2' | 110.9° | 110.9° |
| C3' | C2' | H9 | 111.3° | 110.9° |
| C2' | C3' | H11 | 112.0° | 110.5° |
| O2' | C2' | H9 | 112.7° | 110.8° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| O3P | P | O5' | 107.0° | 109.5° |
| O3P | P | O1P | 110.2° | 109.5° |
| O3P | P | O2P | 113.6° | 109.4° |
| O5' | P | O1P | 109.6° | 109.5° |
| O5' | P | O2P | 102.9° | 109.5° |
| O1P | P | O2P | 113.1° | 109.4° |
| P | O1P | H16 | 109.5° | 114.0° |
| P | O2P | H17 | 109.5° | 114.1° |
| H5 | C7 | H6 | 109.5° | 109.4° |
| H5 | C7 | H7 | 109.5° | 109.5° |
| H6 | C7 | H7 | 109.5° | 109.5° |
| H14 | C5' | H15 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C7 | C6 | C5 | N1 | 162.0° | 179.9° |
| C7 | C6 | C5 | C4 | 153.9° | 180.0° |
| C7 | C6 | N1 | C1' | 30.2° | 0.2° |
| C7 | C6 | N1 | C2 | 143.3° | 179.7° |
| C7 | C6 | C5 | H2 | 26.2° | 0.0° |
| C6 | C7 | H5 | H6 | 120.0° | 120.0° |
| C6 | C7 | H5 | H7 | 120.0° | 120.0° |
| C6 | C7 | H6 | H7 | 120.0° | 120.1° |
| C6 | C5 | C4 | H2 | 180.0° | 180.0° |
| C6 | C5 | C4 | O4 | 169.1° | 179.9° |
| C6 | C5 | C4 | N3 | 8.3° | 0.0° |
| C5 | C6 | N1 | C1' | 168.5° | 180.0° |
| C5 | C6 | N1 | C2 | 18.0° | 0.4° |
| C5 | C6 | C7 | H5 | 180.0° | 0.1° |
| C5 | C6 | C7 | H6 | 60.0° | 120.0° |
| C5 | C6 | C7 | H7 | 60.0° | 119.9° |
| N1 | C6 | C5 | C4 | 8.2° | 0.2° |
| C6 | N1 | C1' | O4' | 104.4° | 130.9° |
| C6 | N1 | C1' | C2 | 173.2° | 179.6° |
| C6 | N1 | C1' | C2' | 138.5° | 115.0° |
| C6 | N1 | C2 | N3 | 12.3° | 0.5° |
| C6 | N1 | C2 | O2 | 164.8° | 179.8° |
| N1 | C6 | C5 | H2 | 171.8° | 179.8° |
| N1 | C6 | C7 | H5 | 19.1° | 179.8° |
| N1 | C6 | C7 | H6 | 101.0° | 59.9° |
| N1 | C6 | C7 | H7 | 139.1° | 60.2° |
| C6 | N1 | C1' | H8 | 13.8° | 7.9° |
| C5 | C4 | O4 | N3 | 161.2° | 180.0° |
| C5 | C4 | N3 | C2 | 15.0° | 0.0° |
| C5 | C4 | N3 | H1 | 165.0° | 180.0° |
| O4' | C1' | N1 | C2' | 117.1° | 114.1° |
| O4' | C1' | N1 | H8 | 118.2° | 123.0° |
| O4' | C1' | N1 | C2 | 68.8° | 48.6° |
| O4' | C1' | C2' | H8 | 118.3° | 118.7° |
| C1' | O4' | C4' | C5' | 114.8° | 145.9° |
| C1' | O4' | C4' | C3' | 8.0° | 26.5° |
| O4' | C1' | C2' | C3' | 33.1° | 37.0° |
| O4' | C1' | C2' | O2' | 150.0° | 155.2° |
| O4' | C1' | C2' | H9 | 86.0° | 81.2° |
| C1' | O4' | C4' | H13 | 126.2° | 93.1° |
| C4' | O4' | C1' | N1 | 140.1° | 158.6° |
| C4' | O4' | C1' | C2' | 15.9° | 40.1° |
| O4' | C4' | C5' | C3' | 117.5° | 117.8° |
| O4' | C4' | C5' | H13 | 119.7° | 121.0° |
| O4' | C4' | C3' | H13 | 118.8° | 119.5° |
| O4' | C4' | C3' | O3' | 86.8° | 120.8° |
| O4' | C4' | C5' | O5' | 168.0° | 66.5° |
| O4' | C4' | C3' | C2' | 28.3° | 2.0° |
| C4' | O4' | C1' | H8 | 102.0° | 78.6° |
| O4' | C4' | C3' | H11 | 148.7° | 116.7° |
| O4' | C4' | C5' | H14 | 72.9° | 173.6° |
| O4' | C4' | C5' | H15 | 48.9° | 53.6° |
| O4 | C4 | N3 | C2 | 176.6° | 180.0° |
| O4 | C4 | N3 | H1 | 3.4° | 0.0° |
| O4 | C4 | C5 | H2 | 11.0° | 0.0° |
| C4 | N3 | C2 | N1 | 4.5° | 0.3° |
| C4 | N3 | C2 | H1 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 178.5° | 180.0° |
| N3 | C4 | C5 | H2 | 171.7° | 180.0° |
| N1 | C1' | C2' | H8 | 124.8° | 122.9° |
| C1' | N1 | C2 | N3 | 174.2° | 180.0° |
| C1' | N1 | C2 | O2 | 8.7° | 0.2° |
| N1 | C1' | C2' | C3' | 150.0° | 155.5° |
| N1 | C1' | C2' | O2' | 93.1° | 86.3° |
| N1 | C1' | C2' | H9 | 30.9° | 37.3° |
| C2 | N1 | C1' | C2' | 48.3° | 65.4° |
| N1 | C2 | N3 | O2 | 177.1° | 179.7° |
| N1 | C2 | N3 | H1 | 175.5° | 179.7° |
| C2 | N1 | C1' | H8 | 173.0° | 171.6° |
| C1' | C2' | C3' | C4' | 37.1° | 20.9° |
| C1' | C2' | C3' | O3' | 76.5° | 97.9° |
| C1' | C2' | C3' | O2' | 114.5° | 118.2° |
| C1' | C2' | C3' | H9 | 119.2° | 118.2° |
| C1' | C2' | O2' | H9 | 123.3° | 123.6° |
| C1' | C2' | O2' | H10 | 180.0° | 180.0° |
| C1' | C2' | C3' | H11 | 157.4° | 139.6° |
| C5' | C4' | C3' | H13 | 122.7° | 121.1° |
| C5' | C4' | C3' | O3' | 154.7° | 119.8° |
| C4' | C5' | O5' | H14 | 119.1° | 120.0° |
| C4' | C5' | O5' | H15 | 119.1° | 120.0° |
| C5' | C4' | C3' | C2' | 90.2° | 121.4° |
| C4' | C5' | O5' | P | 178.5° | 180.0° |
| C5' | C4' | C3' | H11 | 30.2° | 2.7° |
| C4' | C5' | H14 | H15 | 122.6° | 120.0° |
| C4' | C3' | O3' | C2' | 110.7° | 114.8° |
| C4' | C3' | O3' | H11 | 123.9° | 122.6° |
| C3' | C4' | C5' | O5' | 74.5° | 175.7° |
| C4' | C3' | C2' | H11 | 120.3° | 118.7° |
| C4' | C3' | C2' | O2' | 151.6° | 139.1° |
| C4' | C3' | C2' | H9 | 82.1° | 97.3° |
| C4' | C3' | O3' | H12 | 180.0° | 176.3° |
| C3' | C4' | C5' | H14 | 44.6° | 55.7° |
| C3' | C4' | C5' | H15 | 166.4° | 64.3° |
| O2 | C2 | N3 | H1 | 1.6° | 0.0° |
| O3' | C3' | C2' | H11 | 126.1° | 122.5° |
| O3' | C3' | C2' | O2' | 38.0° | 20.3° |
| O3' | C3' | C2' | H9 | 164.3° | 143.9° |
| O3' | C3' | C4' | H13 | 32.0° | 1.2° |
| C5' | O5' | P | O3P | 84.8° | 55.0° |
| C5' | O5' | P | O1P | 34.6° | 65.0° |
| C5' | O5' | P | O2P | 155.2° | 175.0° |
| O5' | C5' | C4' | H13 | 48.3° | 54.6° |
| O5' | C5' | H14 | H15 | 122.6° | 120.0° |
| C3' | C2' | O2' | H9 | 125.5° | 123.7° |
| C3' | C2' | C1' | H8 | 85.2° | 81.6° |
| C3' | C2' | O2' | H10 | 68.9° | 67.3° |
| C2' | C3' | O3' | H12 | 69.3° | 61.5° |
| C2' | C3' | C4' | H13 | 147.1° | 117.5° |
| O2' | C2' | C1' | H8 | 31.7° | 36.6° |
| O2' | C2' | C3' | H11 | 88.1° | 102.3° |
| O3P | P | O5' | O1P | 119.4° | 120.0° |
| O3P | P | O5' | O2P | 120.0° | 120.0° |
| O3P | P | O1P | O2P | 128.4° | 119.9° |
| O3P | P | O1P | H16 | 0.0° | 180.0° |
| O3P | P | O2P | H17 | 0.0° | 60.0° |
| O5' | P | O1P | O2P | 114.2° | 120.1° |
| P | O5' | C5' | H14 | 59.4° | 60.0° |
| P | O5' | C5' | H15 | 62.4° | 60.0° |
| O5' | P | O1P | H16 | 117.5° | 60.0° |
| O5' | P | O2P | H17 | 115.3° | 180.0° |
| O1P | P | O2P | H17 | 126.6° | 60.0° |
| O2P | P | O1P | H16 | 128.4° | 60.0° |
| H5 | C7 | H6 | H7 | 120.0° | 120.0° |
| H8 | C1' | C2' | H9 | 155.7° | 160.2° |
| H9 | C2' | O2' | H10 | 56.7° | 56.4° |
| H9 | C2' | C3' | H11 | 38.3° | 21.4° |
| H11 | C3' | O3' | H12 | 56.2° | 61.1° |
| H11 | C3' | C4' | H13 | 92.5° | 123.8° |
| H13 | C4' | C5' | H14 | 167.4° | 65.4° |
| H13 | C4' | C5' | H15 | 70.8° | 174.6° |
