U6F
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O08 | P08 | doub | 1.48Å | 1.46Å | |
| O07 | P08 | sing | 1.61Å | 1.46Å | |
| P08 | O09 | sing | 1.61Å | 1.47Å | |
| P08 | O1G | sing | 1.61Å | 1.65Å | |
| O3G | PG | doub | 1.48Å | 1.45Å | |
| O02 | PG | sing | 1.61Å | 1.46Å | |
| O1G | PG | sing | 1.61Å | 1.65Å | |
| PG | O06 | sing | 1.61Å | 1.64Å | |
| O04 | P02 | doub | 1.48Å | 1.46Å | |
| O05 | P02 | sing | 1.61Å | 1.47Å | |
| O06 | PB | sing | 1.61Å | 1.65Å | |
| P02 | O3B | sing | 1.61Å | 1.65Å | |
| P02 | O3A | sing | 1.61Å | 1.66Å | |
| O3B | P01 | sing | 1.61Å | 1.65Å | |
| O03 | P01 | doub | 1.48Å | 1.46Å | |
| O1B | PB | doub | 1.48Å | 1.46Å | |
| PB | O2B | sing | 1.61Å | 1.47Å | |
| PB | O2G | sing | 1.61Å | 1.66Å | |
| P01 | O2G | sing | 1.61Å | 1.65Å | |
| P01 | O01 | sing | 1.61Å | 1.50Å | |
| O3A | PA | sing | 1.61Å | 1.65Å | |
| O2A | PA | doub | 1.48Å | 1.46Å | |
| PA | O5' | sing | 1.61Å | 1.68Å | |
| PA | O1A | sing | 1.61Å | 1.46Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C4' | O4' | sing | 1.44Å | 1.53Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| O4' | C1' | sing | 1.44Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C6 | C5 | doub | 1.35Å | 1.33Å | |
| C6 | N1 | sing | 1.37Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.51Å | |
| C1' | N1 | sing | 1.46Å | 1.41Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C5 | C4 | sing | 1.42Å | 1.51Å | |
| N1 | C2 | sing | 1.35Å | 1.47Å | |
| C4 | O4 | doub | 1.22Å | 1.18Å | |
| C4 | N3 | sing | 1.35Å | 1.43Å | |
| C2 | N3 | sing | 1.35Å | 1.45Å | |
| C2 | O2 | doub | 1.22Å | 1.18Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5 | H7 | sing | 1.08Å | 1.08Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O05 | H1 | sing | 0.97Å | 0.95Å | |
| O1A | H2 | sing | 0.97Å | 0.95Å | |
| O2' | H2' | sing | 0.97Å | 0.95Å | |
| O3' | H3' | sing | 0.97Å | 0.95Å | |
| O01 | H4 | sing | 0.97Å | 0.95Å | |
| O02 | H5 | sing | 0.97Å | 0.95Å | |
| O07 | H10 | sing | 0.97Å | 0.95Å | |
| O09 | H11 | sing | 0.97Å | 0.95Å | |
| O2B | H12 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O08 | P08 | O07 | 104.1° | 109.5° |
| O08 | P08 | O09 | 105.2° | 109.5° |
| O08 | P08 | O1G | 114.0° | 109.5° |
| O07 | P08 | O09 | 105.1° | 109.5° |
| O07 | P08 | O1G | 112.9° | 109.5° |
| P08 | O07 | H10 | 109.5° | 114.0° |
| O09 | P08 | O1G | 114.4° | 109.5° |
| P08 | O09 | H11 | 109.5° | 114.0° |
| P08 | O1G | PG | 124.7° | 134.0° |
| O3G | PG | O02 | 100.3° | 109.5° |
| O3G | PG | O1G | 111.4° | 109.5° |
| O3G | PG | O06 | 111.9° | 109.5° |
| O02 | PG | O1G | 112.2° | 109.5° |
| O02 | PG | O06 | 111.2° | 109.5° |
| PG | O02 | H5 | 109.5° | 114.0° |
| O1G | PG | O06 | 109.6° | 109.4° |
| PG | O06 | PB | 123.9° | 134.0° |
| O04 | P02 | O05 | 102.3° | 109.5° |
| O04 | P02 | O3B | 109.5° | 109.5° |
| O04 | P02 | O3A | 109.8° | 109.5° |
| O05 | P02 | O3B | 110.7° | 109.5° |
| O05 | P02 | O3A | 114.1° | 109.5° |
| P02 | O05 | H1 | 109.5° | 114.0° |
| O06 | PB | O1B | 110.0° | 109.5° |
| O06 | PB | O2B | 112.3° | 109.5° |
| O06 | PB | O2G | 108.8° | 109.5° |
| O3B | P02 | O3A | 110.1° | 109.5° |
| P02 | O3B | P01 | 125.7° | 134.0° |
| P02 | O3A | PA | 129.5° | 134.0° |
| O3B | P01 | O03 | 107.9° | 109.5° |
| O3B | P01 | O2G | 109.5° | 109.5° |
| O3B | P01 | O01 | 116.6° | 109.4° |
| O03 | P01 | O2G | 107.5° | 109.5° |
| O03 | P01 | O01 | 98.3° | 109.5° |
| O1B | PB | O2B | 101.3° | 109.5° |
| O1B | PB | O2G | 112.0° | 109.5° |
| O2B | PB | O2G | 112.4° | 109.5° |
| PB | O2B | H12 | 109.5° | 114.0° |
| PB | O2G | P01 | 119.7° | 134.0° |
| O2G | P01 | O01 | 115.9° | 109.4° |
| P01 | O01 | H4 | 109.5° | 114.0° |
| O3A | PA | O2A | 110.3° | 109.5° |
| O3A | PA | O5' | 110.6° | 109.5° |
| O3A | PA | O1A | 111.8° | 109.4° |
| O2A | PA | O5' | 113.6° | 109.5° |
| O2A | PA | O1A | 98.4° | 109.5° |
| O5' | PA | O1A | 111.6° | 109.5° |
| PA | O5' | C5' | 124.0° | 123.0° |
| PA | O1A | H2 | 109.5° | 114.0° |
| O5' | C5' | C4' | 111.2° | 109.5° |
| O5' | C5' | H5'1 | 109.0° | 109.5° |
| O5' | C5' | H5'2 | 109.0° | 109.4° |
| C5' | C4' | O4' | 115.1° | 109.9° |
| C5' | C4' | C3' | 113.1° | 109.8° |
| C5' | C4' | H4' | 109.9° | 110.0° |
| C4' | C5' | H5'1 | 109.0° | 109.5° |
| C4' | C5' | H5'2 | 109.1° | 109.5° |
| O4' | C4' | C3' | 99.3° | 107.3° |
| C4' | O4' | C1' | 109.3° | 106.9° |
| O4' | C4' | H4' | 109.3° | 109.9° |
| C4' | C3' | O3' | 111.5° | 110.5° |
| C4' | C3' | C2' | 103.0° | 104.2° |
| C4' | C3' | H9 | 110.4° | 110.6° |
| C3' | C4' | H4' | 109.6° | 109.9° |
| O4' | C1' | C2' | 101.8° | 103.5° |
| O4' | C1' | N1 | 109.3° | 110.6° |
| O4' | C1' | H1' | 108.4° | 110.8° |
| O3' | C3' | C2' | 109.8° | 110.5° |
| O3' | C3' | H9 | 111.3° | 110.4° |
| C3' | O3' | H3' | 109.5° | 114.0° |
| C3' | C2' | C1' | 102.0° | 102.1° |
| C3' | C2' | O2' | 114.1° | 110.9° |
| C3' | C2' | H8 | 109.9° | 110.9° |
| C2' | C3' | H9 | 110.6° | 110.5° |
| C5 | C6 | N1 | 120.4° | 119.6° |
| C6 | C5 | C4 | 121.2° | 119.2° |
| C6 | C5 | H7 | 119.4° | 120.4° |
| C5 | C6 | H6 | 119.8° | 120.2° |
| C6 | N1 | C1' | 116.8° | 119.7° |
| C6 | N1 | C2 | 119.9° | 120.6° |
| N1 | C6 | H6 | 119.8° | 120.1° |
| C2' | C1' | N1 | 118.1° | 110.6° |
| C1' | C2' | O2' | 109.8° | 111.0° |
| C2' | C1' | H1' | 108.6° | 110.6° |
| C1' | C2' | H8 | 109.7° | 110.9° |
| C1' | N1 | C2 | 123.4° | 119.7° |
| N1 | C1' | H1' | 110.0° | 110.6° |
| O2' | C2' | H8 | 111.0° | 110.8° |
| C2' | O2' | H2' | 109.5° | 114.0° |
| C5 | C4 | O4 | 115.8° | 120.4° |
| C5 | C4 | N3 | 120.7° | 119.3° |
| C4 | C5 | H7 | 119.4° | 120.4° |
| N1 | C2 | N3 | 120.3° | 120.9° |
| N1 | C2 | O2 | 119.9° | 119.5° |
| O4 | C4 | N3 | 123.4° | 120.3° |
| C4 | N3 | C2 | 117.5° | 120.3° |
| C4 | N3 | H3 | 121.3° | 119.8° |
| N3 | C2 | O2 | 119.8° | 119.5° |
| C2 | N3 | H3 | 121.3° | 119.9° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O08 | P08 | O07 | O09 | 110.4° | 120.0° |
| O08 | P08 | O07 | O1G | 124.2° | 120.0° |
| O08 | P08 | O09 | O1G | 125.9° | 120.0° |
| O08 | P08 | O1G | PG | 54.6° | 40.0° |
| O08 | P08 | O07 | H10 | 0.0° | 180.0° |
| O08 | P08 | O09 | H11 | 0.0° | 60.0° |
| O07 | P08 | O09 | O1G | 124.5° | 120.0° |
| O07 | P08 | O1G | PG | 173.2° | 80.0° |
| O07 | P08 | O09 | H11 | 109.6° | 60.0° |
| O09 | P08 | O1G | PG | 66.5° | 160.0° |
| O09 | P08 | O07 | H10 | 110.3° | 60.0° |
| P08 | O1G | PG | O3G | 12.6° | 40.0° |
| P08 | O1G | PG | O02 | 124.2° | 80.0° |
| P08 | O1G | PG | O06 | 111.8° | 160.0° |
| O1G | P08 | O07 | H10 | 124.2° | 60.0° |
| O1G | P08 | O09 | H11 | 126.0° | 180.0° |
| O3G | PG | O02 | O1G | 118.3° | 120.0° |
| O3G | PG | O02 | O06 | 118.5° | 120.0° |
| O3G | PG | O1G | O06 | 124.4° | 120.0° |
| O3G | PG | O06 | PB | 177.1° | 45.0° |
| O3G | PG | O02 | H5 | 0.0° | 180.0° |
| O02 | PG | O1G | O06 | 124.1° | 120.0° |
| O02 | PG | O06 | PB | 71.6° | 75.0° |
| O1G | PG | O06 | PB | 53.0° | 165.0° |
| O1G | PG | O02 | H5 | 118.3° | 60.0° |
| PG | O06 | PB | O1B | 0.4° | 45.0° |
| PG | O06 | PB | O2B | 112.4° | 75.0° |
| PG | O06 | PB | O2G | 122.6° | 165.0° |
| O06 | PG | O02 | H5 | 118.5° | 60.0° |
| O04 | P02 | O05 | O3B | 116.6° | 120.0° |
| O04 | P02 | O05 | O3A | 118.5° | 120.0° |
| O04 | P02 | O3B | O3A | 120.9° | 120.0° |
| O04 | P02 | O3B | P01 | 85.9° | 40.0° |
| O04 | P02 | O3A | PA | 121.9° | 45.0° |
| O04 | P02 | O05 | H1 | 0.0° | 180.0° |
| O05 | P02 | O3B | O3A | 127.1° | 120.0° |
| O05 | P02 | O3B | P01 | 162.1° | 80.0° |
| O05 | P02 | O3A | PA | 7.8° | 75.0° |
| O06 | PB | O1B | O2B | 119.0° | 120.0° |
| O06 | PB | O1B | O2G | 121.1° | 120.0° |
| O06 | PB | O2B | O2G | 123.0° | 120.0° |
| O06 | PB | O2G | P01 | 46.9° | 160.0° |
| O06 | PB | O2B | H12 | 117.3° | 60.0° |
| P02 | O3B | P01 | O03 | 98.4° | 40.0° |
| P02 | O3B | P01 | O2G | 145.0° | 160.0° |
| P02 | O3B | P01 | O01 | 11.0° | 80.0° |
| O3B | P02 | O3A | PA | 117.4° | 165.0° |
| O3B | P02 | O05 | H1 | 116.6° | 60.0° |
| O3A | P02 | O3B | P01 | 35.0° | 160.1° |
| P02 | O3A | PA | O2A | 26.0° | 39.9° |
| P02 | O3A | PA | O5' | 152.6° | 160.0° |
| P02 | O3A | PA | O1A | 82.3° | 80.0° |
| O3A | P02 | O05 | H1 | 118.5° | 60.0° |
| O3B | P01 | O03 | O2G | 118.0° | 120.0° |
| O3B | P01 | O03 | O01 | 121.5° | 120.0° |
| O3B | P01 | O2G | PB | 67.0° | 165.0° |
| O3B | P01 | O2G | O01 | 134.4° | 120.0° |
| O3B | P01 | O01 | H4 | 114.8° | 59.9° |
| O03 | P01 | O2G | PB | 49.9° | 45.0° |
| O03 | P01 | O2G | O01 | 108.7° | 120.0° |
| O03 | P01 | O01 | H4 | 0.0° | 180.0° |
| O1B | PB | O2B | O2G | 119.6° | 120.0° |
| O1B | PB | O2G | P01 | 74.9° | 40.0° |
| O1B | PB | O2B | H12 | 0.0° | 180.0° |
| O2B | PB | O2G | P01 | 171.9° | 80.0° |
| PB | O2G | P01 | O01 | 158.5° | 75.0° |
| O2G | PB | O2B | H12 | 119.7° | 59.9° |
| O2G | P01 | O01 | H4 | 114.0° | 60.0° |
| O3A | PA | O2A | O5' | 124.9° | 120.1° |
| O3A | PA | O2A | O1A | 117.0° | 120.0° |
| O3A | PA | O5' | O1A | 125.1° | 120.0° |
| O3A | PA | O5' | C5' | 104.7° | 175.0° |
| O3A | PA | O1A | H2 | 115.9° | 60.1° |
| O2A | PA | O5' | O1A | 110.2° | 120.0° |
| O2A | PA | O5' | C5' | 130.6° | 55.0° |
| O2A | PA | O1A | H2 | 0.0° | 180.0° |
| PA | O5' | C5' | C4' | 126.0° | 180.0° |
| PA | O5' | C5' | H5'1 | 5.8° | 60.0° |
| PA | O5' | C5' | H5'2 | 113.7° | 60.0° |
| O5' | PA | O1A | H2 | 119.6° | 60.0° |
| O1A | PA | O5' | C5' | 20.4° | 65.0° |
| O5' | C5' | C4' | H5'1 | 120.2° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.3° | 119.9° |
| O5' | C5' | C4' | O4' | 96.5° | 66.4° |
| O5' | C5' | C4' | C3' | 150.2° | 175.7° |
| O5' | C5' | C4' | H4' | 27.4° | 54.6° |
| O5' | C5' | H5'1 | H5'2 | 119.2° | 119.9° |
| C5' | C4' | O4' | C3' | 121.1° | 119.4° |
| C5' | C4' | O4' | H4' | 124.3° | 121.1° |
| C5' | C4' | C3' | H4' | 123.0° | 121.1° |
| C5' | C4' | O4' | C1' | 100.9° | 145.9° |
| C5' | C4' | C3' | O3' | 162.4° | 119.9° |
| C5' | C4' | C3' | C2' | 79.9° | 121.5° |
| C5' | C4' | C3' | H9 | 38.2° | 2.7° |
| C4' | C5' | H5'1 | H5'2 | 119.2° | 120.0° |
| O4' | C4' | C3' | H4' | 114.5° | 119.5° |
| O4' | C4' | C3' | O3' | 75.0° | 120.7° |
| O4' | C4' | C3' | C2' | 42.7° | 2.1° |
| C4' | O4' | C1' | C2' | 9.2° | 40.1° |
| C4' | O4' | C1' | N1 | 134.9° | 158.6° |
| C4' | O4' | C1' | H1' | 105.2° | 78.5° |
| O4' | C4' | C3' | H9 | 160.8° | 116.7° |
| O4' | C4' | C5' | H5'1 | 23.7° | 173.6° |
| O4' | C4' | C5' | H5'2 | 143.2° | 53.5° |
| C3' | C4' | O4' | C1' | 20.2° | 26.5° |
| C4' | C3' | O3' | C2' | 113.4° | 114.7° |
| C4' | C3' | O3' | H9 | 123.7° | 122.7° |
| C4' | C3' | C2' | H9 | 117.9° | 118.8° |
| C4' | C3' | C2' | C1' | 50.7° | 20.8° |
| C4' | C3' | C2' | O2' | 168.9° | 139.1° |
| C4' | C3' | C2' | H8 | 65.7° | 97.3° |
| C3' | C4' | C5' | H5'1 | 89.5° | 55.7° |
| C3' | C4' | C5' | H5'2 | 30.0° | 64.3° |
| C4' | C3' | O3' | H3' | 180.0° | 176.2° |
| O4' | C1' | C2' | C3' | 35.6° | 37.0° |
| O4' | C1' | N1 | C6 | 53.2° | 130.9° |
| O4' | C1' | C2' | N1 | 119.6° | 118.5° |
| O4' | C1' | C2' | H1' | 114.3° | 118.7° |
| O4' | C1' | N1 | H1' | 119.0° | 123.1° |
| O4' | C1' | C2' | O2' | 156.9° | 155.2° |
| O4' | C1' | N1 | C2 | 126.8° | 49.1° |
| O4' | C1' | C2' | H8 | 80.9° | 81.2° |
| C1' | O4' | C4' | H4' | 134.9° | 93.0° |
| O3' | C3' | C2' | H9 | 123.2° | 122.5° |
| O3' | C3' | C2' | C1' | 68.2° | 97.8° |
| O3' | C3' | C2' | O2' | 50.1° | 20.4° |
| O3' | C3' | C2' | H8 | 175.5° | 144.0° |
| O3' | C3' | C4' | H4' | 39.5° | 1.2° |
| C3' | C2' | C1' | O2' | 121.3° | 118.2° |
| C3' | C2' | C1' | H8 | 116.5° | 118.2° |
| C3' | C2' | C1' | N1 | 155.2° | 155.5° |
| C3' | C2' | O2' | H8 | 124.8° | 123.6° |
| C3' | C2' | C1' | H1' | 78.7° | 81.7° |
| C2' | C3' | C4' | H4' | 157.1° | 117.4° |
| C3' | C2' | O2' | H2' | 180.0° | 67.3° |
| C2' | C3' | O3' | H3' | 66.6° | 61.4° |
| C5 | C6 | N1 | H6 | 180.0° | 179.2° |
| C5 | C6 | N1 | C1' | 179.6° | 179.5° |
| C6 | C5 | C4 | H7 | 180.0° | 179.4° |
| C5 | C6 | N1 | C2 | 0.4° | 0.5° |
| C6 | C5 | C4 | O4 | 177.6° | 179.5° |
| C6 | C5 | C4 | N3 | 1.6° | 0.6° |
| C6 | N1 | C1' | C2' | 62.4° | 115.0° |
| C6 | N1 | C1' | C2 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.8° |
| C6 | N1 | C2 | N3 | 0.6° | 0.0° |
| C6 | N1 | C2 | O2 | 179.9° | 179.7° |
| C6 | N1 | C1' | H1' | 172.1° | 7.8° |
| N1 | C6 | C5 | H7 | 180.0° | 179.7° |
| C2' | C1' | N1 | H1' | 125.4° | 122.8° |
| C1' | C2' | O2' | H8 | 121.4° | 123.7° |
| C2' | C1' | N1 | C2 | 117.6° | 65.0° |
| C1' | C2' | C3' | H9 | 168.6° | 139.7° |
| C1' | C2' | O2' | H2' | 66.2° | 180.0° |
| N1 | C1' | C2' | O2' | 83.5° | 86.3° |
| C1' | N1 | C2 | N3 | 179.4° | 180.0° |
| C1' | N1 | C2 | O2 | 0.1° | 0.2° |
| N1 | C1' | C2' | H8 | 38.7° | 37.3° |
| C1' | N1 | C6 | H6 | 0.4° | 0.3° |
| O2' | C2' | C1' | H1' | 42.6° | 36.5° |
| O2' | C2' | C3' | H9 | 73.1° | 102.1° |
| C5 | C4 | O4 | N3 | 179.2° | 179.9° |
| C5 | C4 | N3 | C2 | 2.5° | 0.0° |
| C4 | C5 | C6 | H6 | 179.9° | 180.0° |
| C5 | C4 | N3 | H3 | 177.5° | 180.0° |
| N1 | C2 | N3 | C4 | 2.0° | 0.3° |
| N1 | C2 | N3 | O2 | 179.3° | 179.7° |
| C2 | N1 | C1' | H1' | 7.9° | 172.1° |
| C2 | N1 | C6 | H6 | 179.6° | 179.7° |
| N1 | C2 | N3 | H3 | 178.0° | 179.7° |
| O4 | C4 | N3 | C2 | 176.7° | 180.0° |
| O4 | C4 | C5 | H7 | 2.3° | 0.1° |
| O4 | C4 | N3 | H3 | 3.3° | 0.1° |
| C4 | N3 | C2 | H3 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 178.7° | 180.0° |
| N3 | C4 | C5 | H7 | 178.4° | 180.0° |
| O2 | C2 | N3 | H3 | 1.3° | 0.0° |
| H1' | C1' | C2' | H8 | 164.8° | 160.1° |
| H8 | C2' | C3' | H9 | 52.3° | 21.5° |
| H8 | C2' | O2' | H2' | 55.1° | 56.3° |
| H9 | C3' | C4' | H4' | 84.8° | 123.8° |
| H9 | C3' | O3' | H3' | 56.3° | 61.1° |
| H4' | C4' | C5' | H5'1 | 147.7° | 65.4° |
| H4' | C4' | C5' | H5'2 | 92.8° | 174.6° |
| H7 | C5 | C6 | H6 | 0.1° | 0.6° |
