U5R
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.45Å | |
| C5M | C5' | sing | 1.53Å | 1.53Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C2' | F2' | sing | 1.40Å | 1.31Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.40Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| C1' | N1 | sing | 1.47Å | 1.49Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.40Å | |
| C2 | N3 | sing | 1.35Å | 1.40Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| N3 | H1 | sing | 0.97Å | 1.00Å | |
| C5 | H2 | sing | 1.08Å | 1.08Å | |
| C6 | H3 | sing | 1.08Å | 1.08Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C2' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| C5M | H10 | sing | 1.09Å | 1.10Å | |
| C5M | H11 | sing | 1.09Å | 1.10Å | |
| C5M | H12 | sing | 1.09Å | 1.10Å | |
| OP2 | H13 | sing | 0.97Å | 0.95Å | |
| OP3 | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 109.7° | 110.5° |
| O3' | C3' | C4' | 110.3° | 110.4° |
| O3' | C3' | H6 | 113.7° | 110.6° |
| C3' | O3' | H7 | 109.5° | 114.0° |
| C5M | C5' | O5' | 111.2° | 109.5° |
| C5M | C5' | C4' | 111.6° | 109.5° |
| C5M | C5' | H9 | 107.8° | 109.5° |
| C5' | C5M | H10 | 109.5° | 109.4° |
| C5' | C5M | H11 | 109.5° | 109.5° |
| C5' | C5M | H12 | 109.5° | 109.4° |
| OP1 | P | O5' | 108.4° | 109.5° |
| OP1 | P | OP2 | 119.6° | 109.5° |
| OP1 | P | OP3 | 107.7° | 109.5° |
| C2' | C3' | C4' | 96.9° | 104.1° |
| C3' | C2' | F2' | 103.8° | 110.5° |
| C3' | C2' | C1' | 100.8° | 104.0° |
| C3' | C2' | H5 | 113.3° | 110.6° |
| C2' | C3' | H6 | 112.7° | 110.6° |
| C3' | C4' | C5' | 113.3° | 110.4° |
| C3' | C4' | O4' | 101.8° | 104.8° |
| C4' | C3' | H6 | 112.4° | 110.5° |
| C3' | C4' | H8 | 110.8° | 110.4° |
| P | O5' | C5' | 122.0° | 123.0° |
| O5' | P | OP2 | 109.6° | 109.5° |
| O5' | P | OP3 | 104.2° | 109.5° |
| O5' | C5' | C4' | 109.4° | 109.5° |
| O5' | C5' | H9 | 109.1° | 109.5° |
| OP2 | P | OP3 | 106.4° | 109.4° |
| P | OP2 | H13 | 109.5° | 114.0° |
| C5' | C4' | O4' | 107.9° | 110.4° |
| C5' | C4' | H8 | 110.5° | 110.5° |
| C4' | C5' | H9 | 107.7° | 109.5° |
| F2' | C2' | C1' | 107.8° | 110.5° |
| F2' | C2' | H5 | 116.9° | 110.5° |
| C2' | C1' | O4' | 104.9° | 104.9° |
| C2' | C1' | N1 | 116.0° | 110.3° |
| C2' | C1' | H4 | 109.9° | 110.4° |
| C1' | C2' | H5 | 112.8° | 110.6° |
| C4' | O4' | C1' | 106.6° | 105.3° |
| O4' | C4' | H8 | 112.1° | 110.3° |
| C5 | C6 | N1 | 120.8° | 119.7° |
| C6 | C5 | C4 | 119.3° | 119.1° |
| C6 | C5 | H2 | 120.4° | 120.5° |
| C5 | C6 | H3 | 119.6° | 120.2° |
| C6 | N1 | C1' | 120.1° | 119.7° |
| C6 | N1 | C2 | 119.9° | 120.6° |
| N1 | C6 | H3 | 119.6° | 120.1° |
| O4' | C1' | N1 | 104.0° | 110.4° |
| O4' | C1' | H4 | 111.1° | 110.4° |
| C5 | C4 | O4 | 120.3° | 120.3° |
| C5 | C4 | N3 | 119.2° | 119.4° |
| C4 | C5 | H2 | 120.3° | 120.4° |
| C1' | N1 | C2 | 120.1° | 119.7° |
| N1 | C1' | H4 | 110.6° | 110.3° |
| N1 | C2 | N3 | 120.4° | 120.9° |
| N1 | C2 | O2 | 120.1° | 119.6° |
| O4 | C4 | N3 | 120.5° | 120.3° |
| C4 | N3 | C2 | 120.3° | 120.3° |
| C4 | N3 | H1 | 119.8° | 119.8° |
| N3 | C2 | O2 | 119.5° | 119.5° |
| C2 | N3 | H1 | 119.8° | 119.9° |
| P | OP3 | H14 | 109.5° | 114.0° |
| H10 | C5M | H11 | 109.5° | 109.5° |
| H10 | C5M | H12 | 109.5° | 109.5° |
| H11 | C5M | H12 | 109.4° | 109.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 114.5° | 118.6° |
| O3' | C3' | C2' | H6 | 127.7° | 122.7° |
| O3' | C3' | C4' | H6 | 128.0° | 122.7° |
| O3' | C3' | C4' | C5' | 78.3° | 98.6° |
| O3' | C3' | C2' | F2' | 50.5° | 0.0° |
| O3' | C3' | C2' | C1' | 162.0° | 118.6° |
| O3' | C3' | C4' | O4' | 166.0° | 142.6° |
| O3' | C3' | C2' | H5 | 77.3° | 122.7° |
| O3' | C3' | C4' | H8 | 46.6° | 23.8° |
| C5M | C5' | C4' | C3' | 70.4° | 180.0° |
| C5M | C5' | O5' | P | 87.2° | 120.0° |
| C5M | C5' | O5' | C4' | 123.7° | 120.0° |
| C5M | C5' | O5' | H9 | 118.7° | 120.1° |
| C5M | C5' | C4' | H9 | 118.2° | 120.0° |
| C5M | C5' | C4' | O4' | 177.7° | 64.6° |
| C5M | C5' | C4' | H8 | 54.7° | 57.6° |
| C5' | C5M | H10 | H11 | 120.0° | 120.0° |
| C5' | C5M | H10 | H12 | 120.0° | 119.9° |
| C5' | C5M | H11 | H12 | 120.0° | 120.0° |
| OP1 | P | O5' | OP2 | 132.1° | 120.0° |
| OP1 | P | O5' | OP3 | 114.5° | 120.0° |
| OP1 | P | O5' | C5' | 64.7° | 55.0° |
| OP1 | P | OP2 | OP3 | 122.0° | 120.0° |
| OP1 | P | OP2 | H13 | 0.0° | 59.9° |
| OP1 | P | OP3 | H14 | 0.0° | 180.0° |
| C2' | C3' | C4' | H6 | 118.0° | 118.7° |
| C2' | C3' | C4' | C5' | 167.7° | 142.8° |
| C3' | C2' | F2' | C1' | 106.3° | 114.6° |
| C3' | C2' | F2' | H5 | 125.5° | 122.7° |
| C3' | C2' | C1' | H5 | 121.1° | 118.8° |
| C2' | C3' | C4' | O4' | 52.1° | 24.0° |
| C3' | C2' | C1' | O4' | 27.9° | 23.9° |
| C3' | C2' | C1' | N1 | 86.2° | 142.8° |
| C3' | C2' | C1' | H4 | 147.4° | 95.0° |
| C2' | C3' | O3' | H7 | 180.0° | 61.5° |
| C2' | C3' | C4' | H8 | 67.3° | 94.8° |
| C3' | C4' | C5' | O5' | 53.1° | 60.0° |
| C3' | C4' | C5' | O4' | 112.0° | 115.3° |
| C3' | C4' | C5' | H8 | 125.1° | 122.4° |
| C4' | C3' | C2' | F2' | 64.0° | 118.6° |
| C4' | C3' | C2' | C1' | 47.5° | 0.0° |
| C3' | C4' | O4' | H8 | 118.5° | 118.8° |
| C3' | C4' | O4' | C1' | 35.8° | 40.4° |
| C4' | C3' | C2' | H5 | 168.2° | 118.8° |
| C4' | C3' | O3' | H7 | 74.4° | 176.1° |
| C3' | C4' | C5' | H9 | 171.5° | 60.0° |
| O5' | P | OP2 | OP3 | 112.0° | 120.0° |
| P | O5' | C5' | C4' | 149.1° | 120.0° |
| P | O5' | C5' | H9 | 31.5° | 0.0° |
| O5' | P | OP2 | H13 | 125.9° | 179.9° |
| O5' | P | OP3 | H14 | 115.0° | 60.0° |
| C5' | O5' | P | OP2 | 163.2° | 175.0° |
| O5' | C5' | C4' | H9 | 118.4° | 120.0° |
| O5' | C5' | C4' | O4' | 58.9° | 175.4° |
| C5' | O5' | P | OP3 | 49.8° | 65.0° |
| O5' | C5' | C4' | H8 | 178.1° | 62.3° |
| O5' | C5' | C5M | H10 | 180.0° | 180.0° |
| O5' | C5' | C5M | H11 | 60.0° | 60.0° |
| O5' | C5' | C5M | H12 | 60.0° | 60.1° |
| OP2 | P | OP3 | H14 | 129.3° | 60.0° |
| C5' | C4' | O4' | H8 | 122.0° | 122.4° |
| C5' | C4' | O4' | C1' | 155.3° | 159.3° |
| C5' | C4' | C3' | H6 | 49.7° | 24.1° |
| C4' | C5' | C5M | H10 | 57.6° | 60.0° |
| C4' | C5' | C5M | H11 | 62.4° | 59.9° |
| C4' | C5' | C5M | H12 | 177.6° | 180.0° |
| F2' | C2' | C1' | H5 | 130.5° | 122.6° |
| F2' | C2' | C1' | O4' | 80.5° | 142.6° |
| F2' | C2' | C1' | N1 | 165.4° | 98.6° |
| F2' | C2' | C1' | H4 | 39.0° | 23.6° |
| F2' | C2' | C3' | H6 | 178.2° | 122.7° |
| C2' | C1' | O4' | C4' | 5.0° | 40.5° |
| C2' | C1' | N1 | C6 | 98.0° | 116.6° |
| C2' | C1' | O4' | N1 | 122.3° | 118.9° |
| C2' | C1' | O4' | H4 | 118.7° | 118.9° |
| C2' | C1' | N1 | H4 | 126.0° | 122.2° |
| C2' | C1' | N1 | C2 | 83.3° | 63.9° |
| C1' | C2' | C3' | H6 | 70.3° | 118.7° |
| C4' | O4' | C1' | N1 | 127.3° | 159.3° |
| C4' | O4' | C1' | H4 | 113.7° | 78.4° |
| O4' | C4' | C3' | H6 | 66.0° | 94.7° |
| O4' | C4' | C5' | H9 | 59.5° | 55.4° |
| C5 | C6 | N1 | H3 | 180.0° | 179.7° |
| C6 | C5 | C4 | H2 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 179.4° | 180.0° |
| C5 | C6 | N1 | C2 | 0.7° | 0.5° |
| C6 | C5 | C4 | O4 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.0° |
| C6 | N1 | C1' | O4' | 16.6° | 127.9° |
| N1 | C6 | C5 | C4 | 0.4° | 0.2° |
| C6 | N1 | C1' | C2 | 178.7° | 179.5° |
| C6 | N1 | C2 | N3 | 0.7° | 0.5° |
| C6 | N1 | C2 | O2 | 179.5° | 179.7° |
| N1 | C6 | C5 | H2 | 179.6° | 179.8° |
| C6 | N1 | C1' | H4 | 136.0° | 5.6° |
| O4' | C1' | N1 | H4 | 119.4° | 122.3° |
| O4' | C1' | N1 | C2 | 162.1° | 51.6° |
| O4' | C1' | C2' | H5 | 149.0° | 94.8° |
| C1' | O4' | C4' | H8 | 82.7° | 78.4° |
| C5 | C4 | O4 | N3 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 0.0° | 0.0° |
| C5 | C4 | N3 | H1 | 180.0° | 179.9° |
| C4 | C5 | C6 | H3 | 179.6° | 180.0° |
| C1' | N1 | C2 | N3 | 179.4° | 180.0° |
| C1' | N1 | C2 | O2 | 0.8° | 0.2° |
| C1' | N1 | C6 | H3 | 0.5° | 0.3° |
| N1 | C1' | C2' | H5 | 34.8° | 24.0° |
| N1 | C2 | N3 | C4 | 0.3° | 0.2° |
| N1 | C2 | N3 | O2 | 179.8° | 179.8° |
| N1 | C2 | N3 | H1 | 179.7° | 179.8° |
| C2 | N1 | C6 | H3 | 179.3° | 179.8° |
| C2 | N1 | C1' | H4 | 42.8° | 173.9° |
| O4 | C4 | N3 | C2 | 180.0° | 180.0° |
| O4 | C4 | N3 | H1 | 0.0° | 0.0° |
| O4 | C4 | C5 | H2 | 0.0° | 0.0° |
| C4 | N3 | C2 | H1 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| N3 | C4 | C5 | H2 | 180.0° | 180.0° |
| O2 | C2 | N3 | H1 | 0.1° | 0.0° |
| OP3 | P | OP2 | H13 | 122.1° | 60.1° |
| H2 | C5 | C6 | H3 | 0.4° | 0.0° |
| H4 | C1' | C2' | H5 | 91.5° | 146.2° |
| H5 | C2' | C3' | H6 | 50.4° | 0.1° |
| H6 | C3' | O3' | H7 | 52.9° | 61.2° |
| H6 | C3' | C4' | H8 | 174.6° | 146.5° |
| H8 | C4' | C5' | H9 | 63.4° | 177.7° |
| H9 | C5' | C5M | H10 | 60.5° | 60.0° |
| H9 | C5' | C5M | H11 | 179.5° | 179.9° |
| H9 | C5' | C5M | H12 | 59.5° | 60.0° |
| H10 | C5M | H11 | H12 | 120.0° | 120.1° |
