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SummaryGeometryRelated PDB entries

U5O

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C03sing1.51Å1.59Å
C03C04doub1.31Å1.35Å
C04C05sing1.51Å1.50Å
C03C06sing1.51Å1.50Å
O07P08sing1.61Å1.90Å
P08O09doub1.48Å1.50Å
P08O10sing1.61Å1.50Å
O11P08sing1.61Å1.51Å
C01O07sing1.43Å1.33Å
C04H041sing1.08Å1.08Å
C05H053sing1.09Å1.10Å
C05H051sing1.09Å1.10Å
C05H052sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C06H063sing1.09Å1.10Å
C06H061sing1.09Å1.10Å
C06H062sing1.09Å1.10Å
O10H1sing0.97Å0.95Å
O11H2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C03C04121.8°120.0°
C01C03C06119.6°120.0°
C03C01O07112.6°109.5°
C03C01H011108.7°109.5°
C03C01H012108.7°109.5°
C03C04C05125.1°120.0°
C04C03C06118.6°120.0°
C03C04H041117.4°120.0°
C05C04H041117.5°120.0°
C04C05H053109.5°109.4°
C04C05H051109.5°109.4°
C04C05H052109.4°109.4°
C03C06H063109.5°109.5°
C03C06H061109.5°109.5°
C03C06H062109.5°109.5°
O07P08O09101.3°109.4°
O07P08O10100.5°109.5°
O07P08O11103.6°109.5°
P08O07C01122.3°123.0°
O09P08O10116.4°109.4°
O09P08O11115.3°109.5°
O10P08O11116.1°109.5°
P08O10H1109.5°114.0°
P08O11H2109.5°114.0°
O07C01H011108.7°109.4°
O07C01H012108.7°109.4°
H053C05H051109.5°109.5°
H053C05H052109.5°109.5°
H051C05H052109.5°109.5°
H011C01H012109.4°109.5°
H063C06H061109.5°109.4°
H063C06H062109.5°109.5°
H061C06H062109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C03C04C06179.8°180.0°
C01C03C04C05180.0°180.0°
C03C01O07P08171.2°180.0°
C03C01O07H011120.5°120.0°
C03C01O07H012120.5°120.0°
C01C03C04H0410.0°0.2°
C03C01H011H012118.6°120.1°
C01C03C06H063180.0°90.1°
C01C03C06H06160.0°150.0°
C01C03C06H06260.0°30.0°
C03C04C05H041180.0°179.7°
C04C03C01O07103.5°0.0°
C03C04C05H053180.0°59.7°
C03C04C05H05160.0°60.3°
C03C04C05H05260.0°179.7°
C04C03C01H011136.1°119.9°
C04C03C01H01217.0°120.0°
C04C03C06H0630.2°90.0°
C04C03C06H061120.2°30.0°
C04C03C06H062119.8°150.0°
C05C04C03C060.2°0.0°
C04C05H053H051120.0°120.0°
C04C05H053H052120.0°120.0°
C04C05H051H052120.0°119.9°
C06C03C01O0776.3°180.0°
C06C03C04H041179.8°179.7°
C06C03C01H01144.1°60.0°
C06C03C01H012163.1°60.1°
C03C06H063H061120.0°120.0°
C03C06H063H062120.0°120.0°
C03C06H061H062120.0°120.0°
O07P08O09O10107.8°120.0°
O07P08O09O11111.1°120.0°
O07P08O10O11111.0°120.0°
P08O07C01H01150.8°60.0°
P08O07C01H01268.3°60.0°
O07P08O10H1108.3°60.0°
O07P08O11H2109.7°180.0°
O09P08O10O11140.7°120.0°
O09P08O07C0151.8°55.0°
O09P08O10H10.0°180.0°
O09P08O11H20.0°60.1°
O10P08O07C0168.1°64.9°
O10P08O11H2141.1°59.9°
O11P08O07C01171.6°175.0°
O11P08O10H1140.7°60.0°
O07C01H011H012118.6°119.9°
H041C04C05H0530.0°120.0°
H041C04C05H051120.0°120.0°
H041C04C05H052120.0°0.0°
H053C05H051H052120.0°120.1°
H063C06H061H062120.0°120.0°

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PDB entries from 2024-10-09

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