U5M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| C2 | N1 | sing | 1.35Å | 1.41Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C4 | C5 | sing | 1.42Å | 1.41Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C6 | N1 | sing | 1.37Å | 1.35Å | |
| N1 | C1' | sing | 1.47Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | C2' | sing | 1.54Å | 1.48Å | |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| C2' | F2' | sing | 1.40Å | 1.40Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.55Å | 1.50Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | C5M | sing | 1.53Å | 1.55Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| O5' | P | sing | 1.61Å | 1.61Å | |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.40Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H6N | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5M | H6L | sing | 1.09Å | 1.10Å | |
| C5M | H6M | sing | 1.09Å | 1.10Å | |
| C5M | H5M | sing | 1.09Å | 1.10Å | |
| OP2 | H1 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.64Å | |
| OP3 | H2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 123.7° | 119.6° |
| O2 | C2 | N1 | 121.2° | 119.5° |
| N3 | C2 | N1 | 115.1° | 120.9° |
| C2 | N3 | C4 | 124.6° | 120.3° |
| C2 | N3 | H3 | 117.7° | 119.8° |
| C2 | N1 | C6 | 121.7° | 120.6° |
| C2 | N1 | C1' | 114.2° | 119.7° |
| N3 | C4 | O4 | 118.0° | 120.3° |
| N3 | C4 | C5 | 117.8° | 119.4° |
| C4 | N3 | H3 | 117.7° | 119.9° |
| O4 | C4 | C5 | 124.1° | 120.3° |
| C4 | C5 | C6 | 120.0° | 119.1° |
| C4 | C5 | H5 | 120.0° | 120.4° |
| C5 | C6 | N1 | 120.7° | 119.7° |
| C6 | C5 | H5 | 120.0° | 120.4° |
| C5 | C6 | H6 | 119.6° | 120.1° |
| C6 | N1 | C1' | 124.1° | 119.7° |
| N1 | C6 | H6 | 119.6° | 120.2° |
| N1 | C1' | O4' | 106.0° | 110.4° |
| N1 | C1' | C2' | 113.2° | 110.4° |
| N1 | C1' | H1' | 109.8° | 110.3° |
| O4' | C1' | C2' | 106.8° | 104.8° |
| C1' | O4' | C4' | 108.6° | 105.3° |
| O4' | C1' | H1' | 110.9° | 110.4° |
| C1' | C2' | F2' | 107.9° | 110.5° |
| C1' | C2' | C3' | 102.7° | 104.1° |
| C2' | C1' | H1' | 110.0° | 110.5° |
| C1' | C2' | H2' | 112.0° | 110.5° |
| O4' | C4' | C3' | 104.4° | 104.8° |
| O4' | C4' | C5' | 105.8° | 110.4° |
| O4' | C4' | H4' | 111.6° | 110.4° |
| F2' | C2' | C3' | 108.6° | 110.5° |
| F2' | C2' | H2' | 113.4° | 110.4° |
| C2' | C3' | O3' | 112.4° | 110.5° |
| C2' | C3' | C4' | 100.0° | 104.0° |
| C3' | C2' | H2' | 111.6° | 110.6° |
| C2' | C3' | H3' | 110.3° | 110.5° |
| O3' | C3' | C4' | 111.5° | 110.5° |
| O3' | C3' | H3' | 111.7° | 110.5° |
| C3' | O3' | H6N | 109.5° | 114.0° |
| C3' | C4' | C5' | 114.0° | 110.4° |
| C4' | C3' | H3' | 110.4° | 110.6° |
| C3' | C4' | H4' | 110.6° | 110.4° |
| C4' | C5' | C5M | 112.4° | 109.5° |
| C4' | C5' | O5' | 106.2° | 109.5° |
| C5' | C4' | H4' | 110.2° | 110.4° |
| C4' | C5' | H5' | 109.9° | 109.5° |
| C5M | C5' | O5' | 107.4° | 109.4° |
| C5M | C5' | H5' | 109.5° | 109.5° |
| C5' | C5M | H6L | 109.5° | 109.5° |
| C5' | C5M | H6M | 109.5° | 109.5° |
| C5' | C5M | H5M | 109.4° | 109.5° |
| C5' | O5' | P | 121.5° | 123.0° |
| O5' | C5' | H5' | 111.4° | 109.5° |
| O5' | P | OP1 | 110.0° | 109.5° |
| O5' | P | OP2 | 110.4° | 109.5° |
| O5' | P | OP3 | 99.3° | 109.5° |
| OP1 | P | OP2 | 120.5° | 109.5° |
| OP1 | P | OP3 | 104.0° | 109.5° |
| P | OP2 | H1 | 109.5° | 114.0° |
| OP2 | P | OP3 | 110.3° | 109.5° |
| H6L | C5M | H6M | 109.5° | 109.4° |
| H6L | C5M | H5M | 109.5° | 109.5° |
| H6M | C5M | H5M | 109.5° | 109.4° |
| P | OP3 | H2 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 176.7° | 179.6° |
| O2 | C2 | N3 | C4 | 179.1° | 180.0° |
| O2 | C2 | N1 | C6 | 175.5° | 179.7° |
| O2 | C2 | N1 | C1' | 4.2° | 0.1° |
| O2 | C2 | N3 | H3 | 0.9° | 0.1° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 176.6° | 179.9° |
| C2 | N3 | C4 | C5 | 4.2° | 0.0° |
| N3 | C2 | N1 | C6 | 1.3° | 0.6° |
| N3 | C2 | N1 | C1' | 179.0° | 179.7° |
| N1 | C2 | N3 | C4 | 2.4° | 0.4° |
| C2 | N1 | C6 | C5 | 2.9° | 0.5° |
| C2 | N1 | C6 | C1' | 179.7° | 179.7° |
| C2 | N1 | C1' | O4' | 165.7° | 126.5° |
| C2 | N1 | C1' | C2' | 77.6° | 118.1° |
| N1 | C2 | N3 | H3 | 177.6° | 179.7° |
| C2 | N1 | C6 | H6 | 177.1° | 179.7° |
| C2 | N1 | C1' | H1' | 45.8° | 4.3° |
| N3 | C4 | O4 | C5 | 179.1° | 180.0° |
| N3 | C4 | C5 | C6 | 2.5° | 0.1° |
| N3 | C4 | C5 | H5 | 177.5° | 180.0° |
| O4 | C4 | C5 | C6 | 178.4° | 180.0° |
| O4 | C4 | N3 | H3 | 3.4° | 0.0° |
| O4 | C4 | C5 | H5 | 1.6° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | N1 | 0.9° | 0.2° |
| C5 | C4 | N3 | H3 | 175.8° | 180.0° |
| C4 | C5 | C6 | H6 | 179.1° | 180.0° |
| C5 | C6 | N1 | H6 | 180.0° | 179.8° |
| C5 | C6 | N1 | C1' | 177.5° | 179.8° |
| C6 | N1 | C1' | O4' | 14.6° | 53.8° |
| C6 | N1 | C1' | C2' | 102.1° | 61.6° |
| N1 | C6 | C5 | H5 | 179.1° | 179.8° |
| C6 | N1 | C1' | H1' | 134.5° | 176.1° |
| N1 | C1' | O4' | C2' | 120.9° | 118.8° |
| N1 | C1' | O4' | H1' | 119.2° | 122.2° |
| N1 | C1' | C2' | H1' | 123.3° | 122.3° |
| N1 | C1' | O4' | C4' | 119.1° | 159.4° |
| N1 | C1' | C2' | F2' | 155.7° | 98.5° |
| N1 | C1' | C2' | C3' | 89.7° | 142.8° |
| C1' | N1 | C6 | H6 | 2.5° | 0.0° |
| N1 | C1' | C2' | H2' | 30.2° | 24.0° |
| O4' | C1' | C2' | H1' | 120.5° | 118.9° |
| O4' | C1' | C2' | F2' | 88.0° | 142.6° |
| O4' | C1' | C2' | C3' | 26.6° | 24.0° |
| C1' | O4' | C4' | C3' | 23.9° | 40.5° |
| C1' | O4' | C4' | C5' | 144.5° | 159.3° |
| O4' | C1' | C2' | H2' | 146.5° | 94.8° |
| C1' | O4' | C4' | H4' | 95.6° | 78.3° |
| C2' | C1' | O4' | C4' | 1.9° | 40.5° |
| C1' | C2' | F2' | C3' | 110.6° | 114.7° |
| C1' | C2' | F2' | H2' | 124.7° | 122.6° |
| C1' | C2' | C3' | H2' | 120.2° | 118.7° |
| C1' | C2' | C3' | O3' | 157.8° | 118.6° |
| C1' | C2' | C3' | C4' | 39.5° | 0.0° |
| C1' | C2' | C3' | H3' | 76.8° | 118.7° |
| O4' | C4' | C3' | C2' | 39.0° | 24.0° |
| O4' | C4' | C3' | O3' | 158.0° | 142.6° |
| O4' | C4' | C3' | C5' | 115.0° | 118.8° |
| O4' | C4' | C3' | H4' | 120.2° | 118.8° |
| O4' | C4' | C5' | H4' | 120.8° | 122.3° |
| O4' | C4' | C5' | C5M | 175.9° | 56.4° |
| O4' | C4' | C5' | O5' | 58.8° | 63.5° |
| C4' | O4' | C1' | H1' | 121.7° | 78.5° |
| O4' | C4' | C3' | H3' | 77.2° | 94.7° |
| O4' | C4' | C5' | H5' | 61.8° | 176.5° |
| F2' | C2' | C3' | H2' | 125.8° | 122.6° |
| F2' | C2' | C3' | O3' | 43.8° | 0.1° |
| F2' | C2' | C3' | C4' | 74.6° | 118.7° |
| F2' | C2' | C1' | H1' | 32.4° | 23.8° |
| F2' | C2' | C3' | H3' | 169.2° | 122.6° |
| C2' | C3' | O3' | C4' | 111.3° | 114.6° |
| C2' | C3' | O3' | H3' | 124.6° | 122.6° |
| C2' | C3' | C4' | H3' | 116.2° | 118.7° |
| C2' | C3' | C4' | C5' | 154.0° | 142.8° |
| C3' | C2' | C1' | H1' | 147.0° | 94.9° |
| C2' | C3' | O3' | H6N | 180.0° | 61.5° |
| C2' | C3' | C4' | H4' | 81.2° | 94.8° |
| O3' | C3' | C4' | H3' | 124.8° | 122.7° |
| O3' | C3' | C4' | C5' | 87.0° | 98.6° |
| O3' | C3' | C2' | H2' | 82.0° | 122.6° |
| O3' | C3' | C4' | H4' | 37.8° | 23.8° |
| C3' | C4' | C5' | H4' | 125.0° | 122.4° |
| C3' | C4' | C5' | C5M | 69.9° | 171.8° |
| C3' | C4' | C5' | O5' | 172.9° | 51.8° |
| C4' | C3' | C2' | H2' | 159.6° | 118.7° |
| C4' | C3' | O3' | H6N | 68.7° | 176.0° |
| C3' | C4' | C5' | H5' | 52.3° | 68.2° |
| C4' | C5' | C5M | O5' | 116.4° | 120.0° |
| C4' | C5' | C5M | H5' | 122.5° | 120.0° |
| C4' | C5' | O5' | H5' | 119.6° | 120.0° |
| C4' | C5' | O5' | P | 162.3° | 120.0° |
| C5' | C4' | C3' | H3' | 37.8° | 24.1° |
| C4' | C5' | C5M | H6L | 180.0° | 60.0° |
| C4' | C5' | C5M | H6M | 60.0° | 60.0° |
| C4' | C5' | C5M | H5M | 60.0° | 180.0° |
| C5M | C5' | O5' | H5' | 119.9° | 120.0° |
| C5M | C5' | O5' | P | 77.3° | 120.0° |
| C5M | C5' | C4' | H4' | 55.1° | 65.8° |
| C5' | C5M | H6L | H6M | 120.0° | 120.0° |
| C5' | C5M | H6L | H5M | 120.0° | 120.1° |
| C5' | C5M | H6M | H5M | 120.0° | 120.0° |
| C5' | O5' | P | OP1 | 101.0° | 55.0° |
| C5' | O5' | P | OP2 | 34.3° | 175.0° |
| O5' | C5' | C4' | H4' | 62.0° | 174.2° |
| O5' | C5' | C5M | H6L | 63.6° | 60.0° |
| O5' | C5' | C5M | H6M | 56.4° | 180.0° |
| O5' | C5' | C5M | H5M | 176.4° | 60.0° |
| C5' | O5' | P | OP3 | 150.2° | 65.1° |
| O5' | P | OP1 | OP2 | 130.1° | 120.0° |
| O5' | P | OP1 | OP3 | 105.6° | 120.0° |
| O5' | P | OP2 | OP3 | 108.8° | 120.0° |
| P | O5' | C5' | H5' | 42.7° | 0.1° |
| O5' | P | OP2 | H1 | 130.0° | 180.0° |
| O5' | P | OP3 | H2 | 113.5° | 60.0° |
| OP1 | P | OP2 | OP3 | 121.2° | 120.0° |
| OP1 | P | OP2 | H1 | 0.0° | 60.0° |
| OP1 | P | OP3 | H2 | 0.0° | 180.0° |
| OP2 | P | OP3 | H2 | 130.5° | 60.0° |
| H5 | C5 | C6 | H6 | 0.9° | 0.0° |
| H1' | C1' | C2' | H2' | 93.1° | 146.3° |
| H2' | C2' | C3' | H3' | 43.4° | 0.0° |
| H3' | C3' | O3' | H6N | 55.4° | 61.2° |
| H3' | C3' | C4' | H4' | 162.6° | 146.5° |
| H4' | C4' | C5' | H5' | 177.4° | 54.2° |
| H5' | C5' | C5M | H6L | 57.6° | 180.0° |
| H5' | C5' | C5M | H6M | 177.5° | 60.0° |
| H5' | C5' | C5M | H5M | 62.5° | 60.0° |
| H6L | C5M | H6M | H5M | 120.0° | 120.0° |
| H1 | OP2 | P | OP3 | 121.2° | 60.0° |
