U5F
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.35Å | |
| C2 | N1 | sing | 1.35Å | 1.34Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| C1' | O4' | sing | 1.44Å | 1.45Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.55Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C4 | C5 | sing | 1.42Å | 1.42Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C6 | C5 | doub | 1.35Å | 1.35Å | |
| O04 | P02 | doub | 1.48Å | 1.48Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.54Å | 1.54Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| O05 | P02 | sing | 1.61Å | 1.61Å | |
| O3A | P02 | sing | 1.61Å | 1.61Å | |
| O3A | PA | sing | 1.61Å | 1.61Å | |
| O02 | PG | doub | 1.48Å | 1.61Å | |
| P02 | O3B | sing | 1.61Å | 1.62Å | |
| O03 | P01 | doub | 1.48Å | 1.61Å | |
| O5' | PA | sing | 1.61Å | 1.61Å | |
| O3G | PG | sing | 1.61Å | 1.61Å | |
| PA | O1A | doub | 1.48Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.61Å | |
| PG | O06 | sing | 1.61Å | 1.62Å | |
| PG | O1G | sing | 1.61Å | 1.48Å | |
| P01 | O3B | sing | 1.61Å | 1.62Å | |
| P01 | O01 | sing | 1.61Å | 1.48Å | |
| P01 | O2G | sing | 1.61Å | 1.61Å | |
| O06 | PB | sing | 1.61Å | 1.62Å | |
| O2B | PB | doub | 1.48Å | 1.61Å | |
| PB | O2G | sing | 1.61Å | 1.61Å | |
| PB | O1B | sing | 1.61Å | 1.48Å | |
| C1' | H1 | sing | 1.09Å | 1.10Å | |
| C4' | H2 | sing | 1.09Å | 1.10Å | |
| C5 | H3 | sing | 1.08Å | 1.08Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | H7 | sing | 0.97Å | 1.00Å | |
| O01 | H8 | sing | 0.97Å | 0.95Å | |
| O05 | H9 | sing | 0.97Å | 0.95Å | |
| O1B | H10 | sing | 0.97Å | 0.95Å | |
| O1G | H11 | sing | 0.97Å | 0.95Å | |
| O2A | H12 | sing | 0.97Å | 0.95Å | |
| O3G | H13 | sing | 0.97Å | 0.95Å | |
| C2' | H14 | sing | 1.09Å | 1.10Å | |
| C3' | H15 | sing | 1.09Å | 1.10Å | |
| O2' | H16 | sing | 0.97Å | 0.95Å | |
| O3' | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 119.9° | 119.6° |
| O2 | C2 | N1 | 118.9° | 119.5° |
| N3 | C2 | N1 | 121.2° | 120.9° |
| C2 | N3 | C4 | 120.3° | 120.3° |
| C2 | N3 | H7 | 119.9° | 119.8° |
| C2 | N1 | C1' | 119.6° | 119.7° |
| C2 | N1 | C6 | 120.4° | 120.6° |
| N3 | C4 | O4 | 119.7° | 120.3° |
| N3 | C4 | C5 | 119.5° | 119.3° |
| C4 | N3 | H7 | 119.9° | 119.9° |
| O4' | C1' | N1 | 109.6° | 110.4° |
| O4' | C1' | C2' | 101.6° | 104.8° |
| C1' | O4' | C4' | 110.9° | 105.3° |
| O4' | C1' | H1 | 114.5° | 110.3° |
| N1 | C1' | C2' | 103.2° | 110.4° |
| C1' | N1 | C6 | 120.0° | 119.7° |
| N1 | C1' | H1 | 114.0° | 110.4° |
| C1' | C2' | O2' | 113.3° | 110.5° |
| C1' | C2' | C3' | 104.7° | 104.1° |
| C2' | C1' | H1 | 112.7° | 110.5° |
| C1' | C2' | H14 | 108.7° | 110.5° |
| O4' | C4' | C3' | 107.7° | 104.8° |
| O4' | C4' | C5' | 108.6° | 110.4° |
| O4' | C4' | H2 | 109.1° | 110.5° |
| N1 | C6 | C5 | 119.9° | 119.7° |
| N1 | C6 | H6 | 120.0° | 120.2° |
| O4 | C4 | C5 | 120.7° | 120.4° |
| C4 | C5 | C6 | 118.7° | 119.1° |
| C4 | C5 | H3 | 120.6° | 120.4° |
| C3' | C4' | C5' | 115.2° | 110.3° |
| C4' | C3' | O3' | 109.0° | 110.5° |
| C4' | C3' | C2' | 101.7° | 104.1° |
| C3' | C4' | H2 | 108.0° | 110.4° |
| C4' | C3' | H15 | 111.1° | 110.5° |
| C4' | C5' | O5' | 105.9° | 109.4° |
| C5' | C4' | H2 | 108.1° | 110.4° |
| C4' | C5' | H4 | 110.4° | 109.5° |
| C4' | C5' | H5 | 110.4° | 109.5° |
| O3' | C3' | C2' | 110.5° | 110.5° |
| O3' | C3' | H15 | 112.8° | 110.6° |
| C3' | O3' | H17 | 109.5° | 114.0° |
| C6 | C5 | H3 | 120.6° | 120.5° |
| C5 | C6 | H6 | 120.0° | 120.1° |
| O04 | P02 | O05 | 108.6° | 109.5° |
| O04 | P02 | O3A | 107.0° | 109.5° |
| O04 | P02 | O3B | 113.1° | 109.4° |
| O2' | C2' | C3' | 110.9° | 110.5° |
| O2' | C2' | H14 | 110.3° | 110.4° |
| C2' | O2' | H16 | 109.5° | 113.9° |
| C3' | C2' | H14 | 108.8° | 110.7° |
| C2' | C3' | H15 | 111.1° | 110.5° |
| C5' | O5' | PA | 109.8° | 123.0° |
| O5' | C5' | H4 | 110.4° | 109.5° |
| O5' | C5' | H5 | 110.4° | 109.5° |
| O05 | P02 | O3A | 109.7° | 109.5° |
| O05 | P02 | O3B | 107.4° | 109.5° |
| P02 | O05 | H9 | 109.5° | 114.0° |
| P02 | O3A | PA | 110.3° | 134.0° |
| O3A | P02 | O3B | 111.0° | 109.5° |
| O3A | PA | O5' | 108.8° | 109.5° |
| O3A | PA | O1A | 109.6° | 109.5° |
| O3A | PA | O2A | 111.4° | 109.5° |
| O02 | PG | O3G | 108.8° | 109.5° |
| O02 | PG | O06 | 108.0° | 109.5° |
| O02 | PG | O1G | 109.2° | 109.5° |
| P02 | O3B | P01 | 115.9° | 134.0° |
| O03 | P01 | O3B | 113.5° | 109.5° |
| O03 | P01 | O01 | 109.5° | 109.5° |
| O03 | P01 | O2G | 107.6° | 109.5° |
| O5' | PA | O1A | 109.1° | 109.5° |
| O5' | PA | O2A | 108.0° | 109.5° |
| O3G | PG | O06 | 111.1° | 109.5° |
| O3G | PG | O1G | 109.5° | 109.5° |
| PG | O3G | H13 | 109.5° | 114.0° |
| O1A | PA | O2A | 109.9° | 109.5° |
| PA | O2A | H12 | 109.5° | 114.0° |
| O06 | PG | O1G | 110.2° | 109.4° |
| PG | O06 | PB | 112.8° | 134.0° |
| PG | O1G | H11 | 109.5° | 113.9° |
| O3B | P01 | O01 | 108.9° | 109.5° |
| O3B | P01 | O2G | 107.7° | 109.5° |
| O01 | P01 | O2G | 109.6° | 109.5° |
| P01 | O01 | H8 | 109.5° | 114.0° |
| P01 | O2G | PB | 106.9° | 134.0° |
| O06 | PB | O2B | 111.2° | 109.4° |
| O06 | PB | O2G | 108.3° | 109.5° |
| O06 | PB | O1B | 109.9° | 109.5° |
| O2B | PB | O2G | 109.9° | 109.5° |
| O2B | PB | O1B | 109.4° | 109.5° |
| O2G | PB | O1B | 108.2° | 109.5° |
| PB | O1B | H10 | 109.5° | 114.0° |
| H4 | C5' | H5 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.8° | 179.8° |
| O2 | C2 | N3 | C4 | 179.5° | 179.7° |
| O2 | C2 | N1 | C1' | 0.1° | 0.2° |
| O2 | C2 | N1 | C6 | 179.7° | 179.7° |
| O2 | C2 | N3 | H7 | 0.5° | 0.2° |
| C2 | N3 | C4 | H7 | 180.0° | 180.0° |
| N3 | C2 | N1 | C1' | 179.7° | 180.0° |
| N3 | C2 | N1 | C6 | 0.5° | 0.0° |
| C2 | N3 | C4 | O4 | 179.6° | 180.0° |
| C2 | N3 | C4 | C5 | 0.4° | 0.0° |
| N1 | C2 | N3 | C4 | 0.7° | 0.0° |
| C2 | N1 | C1' | O4' | 149.1° | 126.5° |
| C2 | N1 | C1' | C6 | 179.8° | 179.9° |
| C2 | N1 | C1' | C2' | 103.4° | 118.2° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C1' | H1 | 19.3° | 4.3° |
| C2 | N1 | C6 | H6 | 179.9° | 180.0° |
| N1 | C2 | N3 | H7 | 179.3° | 180.0° |
| N3 | C4 | O4 | C5 | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| N3 | C4 | C5 | H3 | 179.8° | 179.9° |
| O4' | C1' | N1 | C2' | 107.6° | 115.4° |
| O4' | C1' | N1 | H1 | 129.8° | 122.2° |
| O4' | C1' | C2' | H1 | 122.9° | 118.8° |
| O4' | C1' | N1 | C6 | 31.1° | 53.6° |
| C1' | O4' | C4' | C3' | 9.7° | 40.5° |
| C1' | O4' | C4' | C5' | 135.1° | 159.3° |
| O4' | C1' | C2' | O2' | 157.6° | 142.6° |
| O4' | C1' | C2' | C3' | 36.7° | 24.0° |
| C1' | O4' | C4' | H2 | 107.3° | 78.4° |
| O4' | C1' | C2' | H14 | 79.4° | 94.9° |
| N1 | C1' | C2' | H1 | 123.5° | 122.4° |
| N1 | C1' | O4' | C4' | 137.4° | 159.3° |
| C1' | N1 | C6 | C5 | 179.7° | 180.0° |
| N1 | C1' | C2' | O2' | 88.8° | 98.6° |
| N1 | C1' | C2' | C3' | 150.2° | 142.8° |
| C1' | N1 | C6 | H6 | 0.3° | 0.1° |
| N1 | C1' | C2' | H14 | 34.2° | 23.9° |
| C2' | C1' | O4' | C4' | 28.7° | 40.5° |
| C2' | C1' | N1 | C6 | 76.4° | 61.8° |
| C1' | C2' | C3' | C4' | 30.8° | 0.0° |
| C1' | C2' | C3' | O3' | 84.8° | 118.6° |
| C1' | C2' | O2' | C3' | 117.4° | 114.6° |
| C1' | C2' | O2' | H14 | 122.1° | 122.6° |
| C1' | C2' | C3' | H14 | 116.0° | 118.7° |
| C1' | C2' | C3' | H15 | 149.2° | 118.7° |
| C1' | C2' | O2' | H16 | 180.0° | 180.0° |
| O4' | C4' | C3' | C5' | 121.4° | 118.8° |
| O4' | C4' | C3' | H2 | 117.7° | 119.0° |
| O4' | C4' | C5' | H2 | 118.3° | 122.4° |
| O4' | C4' | C3' | O3' | 102.8° | 142.6° |
| O4' | C4' | C3' | C2' | 13.9° | 24.0° |
| O4' | C4' | C5' | O5' | 57.3° | 69.6° |
| C4' | O4' | C1' | H1 | 93.1° | 78.4° |
| O4' | C4' | C5' | H4 | 62.1° | 170.4° |
| O4' | C4' | C5' | H5 | 176.8° | 50.4° |
| O4' | C4' | C3' | H15 | 132.3° | 94.7° |
| N1 | C6 | C5 | C4 | 0.4° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C1' | H1 | 160.9° | 175.8° |
| N1 | C6 | C5 | H3 | 179.6° | 179.9° |
| O4 | C4 | C5 | C6 | 179.9° | 180.0° |
| O4 | C4 | C5 | H3 | 0.2° | 0.1° |
| O4 | C4 | N3 | H7 | 0.4° | 0.0° |
| C4 | C5 | C6 | H3 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 179.6° | 180.0° |
| C5 | C4 | N3 | H7 | 179.6° | 180.0° |
| C3' | C4' | C5' | H2 | 120.8° | 122.2° |
| C4' | C3' | O3' | C2' | 111.0° | 114.6° |
| C4' | C3' | O3' | H15 | 124.0° | 122.7° |
| C4' | C3' | C2' | O2' | 153.3° | 118.6° |
| C4' | C3' | C2' | H15 | 118.4° | 118.7° |
| C3' | C4' | C5' | O5' | 63.6° | 175.0° |
| C3' | C4' | C5' | H4 | 176.9° | 55.0° |
| C3' | C4' | C5' | H5 | 55.8° | 65.0° |
| C4' | C3' | C2' | H14 | 85.2° | 118.7° |
| C4' | C3' | O3' | H17 | 180.0° | 180.0° |
| C5' | C4' | C3' | O3' | 135.8° | 98.6° |
| C5' | C4' | C3' | C2' | 107.5° | 142.8° |
| C4' | C5' | O5' | H4 | 119.4° | 120.0° |
| C4' | C5' | O5' | H5 | 119.5° | 120.0° |
| C4' | C5' | O5' | PA | 164.3° | 180.0° |
| C4' | C5' | H4 | H5 | 121.7° | 120.0° |
| C5' | C4' | C3' | H15 | 10.8° | 24.1° |
| O3' | C3' | C2' | O2' | 37.7° | 0.0° |
| O3' | C3' | C2' | H15 | 126.0° | 122.8° |
| O3' | C3' | C4' | H2 | 14.9° | 23.6° |
| O3' | C3' | C2' | H14 | 159.2° | 122.7° |
| O04 | P02 | O05 | O3A | 116.6° | 120.0° |
| O04 | P02 | O05 | O3B | 122.6° | 119.9° |
| O04 | P02 | O3A | O3B | 123.8° | 120.0° |
| O04 | P02 | O3A | PA | 176.2° | 45.0° |
| O04 | P02 | O3B | P01 | 13.2° | 40.0° |
| O04 | P02 | O05 | H9 | 0.0° | 179.9° |
| O2' | C2' | C3' | H14 | 121.5° | 122.7° |
| O2' | C2' | C1' | H1 | 34.7° | 23.8° |
| O2' | C2' | C3' | H15 | 88.3° | 122.7° |
| C3' | C2' | C1' | H1 | 86.2° | 94.9° |
| C2' | C3' | C4' | H2 | 131.6° | 95.0° |
| C3' | C2' | O2' | H16 | 62.6° | 65.4° |
| C2' | C3' | O3' | H17 | 69.0° | 65.4° |
| C5' | O5' | PA | O3A | 62.4° | 175.0° |
| C5' | O5' | PA | O1A | 57.2° | 55.0° |
| C5' | O5' | PA | O2A | 176.6° | 65.0° |
| O5' | C5' | C4' | H2 | 175.6° | 52.8° |
| O5' | C5' | H4 | H5 | 121.7° | 120.0° |
| O05 | P02 | O3A | O3B | 118.5° | 120.0° |
| O05 | P02 | O3A | PA | 58.5° | 75.0° |
| O05 | P02 | O3B | P01 | 133.0° | 80.0° |
| P02 | O3A | PA | O5' | 115.3° | 165.0° |
| P02 | O3A | PA | O1A | 125.5° | 45.0° |
| P02 | O3A | PA | O2A | 3.6° | 75.0° |
| O3A | P02 | O3B | P01 | 107.1° | 160.0° |
| O3A | P02 | O05 | H9 | 116.7° | 60.1° |
| PA | O3A | P02 | O3B | 60.0° | 165.0° |
| O3A | PA | O5' | O1A | 119.6° | 120.0° |
| O3A | PA | O5' | O2A | 121.0° | 120.0° |
| O3A | PA | O1A | O2A | 122.8° | 120.0° |
| O3A | PA | O2A | H12 | 121.7° | 60.0° |
| O02 | PG | O3G | O06 | 118.8° | 120.0° |
| O02 | PG | O3G | O1G | 119.3° | 120.0° |
| O02 | PG | O06 | O1G | 119.2° | 120.0° |
| O02 | PG | O06 | PB | 162.0° | 40.0° |
| O02 | PG | O1G | H11 | 0.0° | 60.0° |
| O02 | PG | O3G | H13 | 0.0° | 180.0° |
| P02 | O3B | P01 | O03 | 40.4° | 40.0° |
| P02 | O3B | P01 | O01 | 81.8° | 80.0° |
| P02 | O3B | P01 | O2G | 159.4° | 160.0° |
| O3B | P02 | O05 | H9 | 122.6° | 60.0° |
| O03 | P01 | O3B | O01 | 122.2° | 120.0° |
| O03 | P01 | O3B | O2G | 119.0° | 120.0° |
| O03 | P01 | O01 | O2G | 117.8° | 120.0° |
| O03 | P01 | O2G | PB | 42.6° | 45.0° |
| O03 | P01 | O01 | H8 | 0.0° | 180.0° |
| O5' | PA | O1A | O2A | 118.2° | 120.0° |
| PA | O5' | C5' | H4 | 44.8° | 60.1° |
| PA | O5' | C5' | H5 | 76.3° | 60.0° |
| O5' | PA | O2A | H12 | 118.9° | 60.0° |
| O3G | PG | O06 | O1G | 121.6° | 120.0° |
| O3G | PG | O06 | PB | 42.7° | 80.0° |
| O3G | PG | O1G | H11 | 119.0° | 60.0° |
| O1A | PA | O2A | H12 | 0.0° | 180.0° |
| PG | O06 | PB | O2B | 61.5° | 45.0° |
| PG | O06 | PB | O2G | 177.7° | 165.0° |
| PG | O06 | PB | O1B | 59.8° | 75.0° |
| O06 | PG | O1G | H11 | 118.4° | 180.0° |
| O06 | PG | O3G | H13 | 118.7° | 60.0° |
| O1G | PG | O06 | PB | 78.8° | 160.0° |
| O1G | PG | O3G | H13 | 119.3° | 60.0° |
| O3B | P01 | O01 | O2G | 117.6° | 120.0° |
| O3B | P01 | O2G | PB | 80.2° | 165.0° |
| O3B | P01 | O01 | H8 | 124.6° | 60.0° |
| O01 | P01 | O2G | PB | 161.5° | 75.0° |
| P01 | O2G | PB | O06 | 38.5° | 160.0° |
| P01 | O2G | PB | O2B | 83.1° | 40.0° |
| P01 | O2G | PB | O1B | 157.6° | 80.0° |
| O2G | P01 | O01 | H8 | 117.8° | 60.0° |
| O06 | PB | O2B | O2G | 119.9° | 120.0° |
| O06 | PB | O2B | O1B | 121.5° | 120.0° |
| O06 | PB | O2G | O1B | 119.0° | 120.0° |
| O06 | PB | O1B | H10 | 122.3° | 60.0° |
| O2B | PB | O2G | O1B | 119.4° | 120.0° |
| O2B | PB | O1B | H10 | 0.0° | 179.9° |
| O2G | PB | O1B | H10 | 119.7° | 60.0° |
| H1 | C1' | C2' | H14 | 157.7° | 146.3° |
| H2 | C4' | C5' | H4 | 56.1° | 67.2° |
| H2 | C4' | C5' | H5 | 65.0° | 172.8° |
| H2 | C4' | C3' | H15 | 110.0° | 146.4° |
| H3 | C5 | C6 | H6 | 0.4° | 0.1° |
| H14 | C2' | C3' | H15 | 33.2° | 0.1° |
| H14 | C2' | O2' | H16 | 57.9° | 57.4° |
| H15 | C3' | O3' | H17 | 56.1° | 57.4° |
