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U4Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2'C2'sing1.43Å1.43Å
C13C14doub1.30Å1.40Å
C13C12sing1.50Å1.40Å
O3'C3'sing1.43Å1.43Å
C14C9sing1.50Å1.40Å
OCdoub1.21Å1.25Å
O15C12sing1.43Å1.26Å
C12C11sing1.50Å1.40Å
C3'C2'sing1.55Å1.53Å
C3'C4'sing1.54Å1.53Å
C9C7sing1.51Å1.49Å
C9C10sing1.50Å1.40Å
C7C3doub1.33Å1.34Å
C2'C1'sing1.55Å1.52Å
O2C1doub1.22Å1.23Å
C11C10doub1.30Å1.40Å
COXTsing1.34Å1.26Å
CCAsing1.51Å1.51Å
C1C3sing1.47Å1.48Å
C1Nsing1.35Å1.27Å
CANsing1.47Å1.47Å
CACBsing1.53Å1.53Å
SDC5'sing1.81Å1.76Å
SDCGsing1.81Å1.77Å
C4'C5'sing1.53Å1.54Å
C4'O4'sing1.44Å1.43Å
C1'N9sing1.46Å1.48Å
C1'O4'sing1.44Å1.43Å
C8N9sing1.36Å1.34ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
CBCGsing1.53Å1.54Å
N7C5sing1.35Å1.35ÅAromatic
C4C5doub1.41Å1.39ÅAromatic
C4N3sing1.33Å1.37ÅAromatic
C5C6sing1.41Å1.40ÅAromatic
N3C2doub1.32Å1.35ÅAromatic
C6N6sing1.38Å1.35Å
C6N1doub1.33Å1.36ÅAromatic
C2N1sing1.32Å1.35ÅAromatic
C2H1sing1.08Å1.08Å
C5'H2sing1.09Å1.10Å
C5'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C1'H5sing1.09Å1.10Å
C8H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C2'H8sing1.09Å1.10Å
C3'H9sing1.09Å1.10Å
O3'H10sing0.97Å0.95Å
C3H11sing1.08Å1.08Å
NH12sing0.97Å1.00Å
CAH13sing1.09Å1.10Å
OXTH14sing0.97Å0.95Å
CBH15sing1.09Å1.10Å
CBH16sing1.09Å1.10Å
CGH17sing1.09Å1.10Å
CGH18sing1.09Å1.10Å
O2'H19sing0.97Å0.95Å
N6H20sing0.97Å1.00Å
N6H21sing0.97Å1.00Å
C9H22sing1.09Å1.10Å
C10H23sing1.08Å1.08Å
C11H24sing1.08Å1.08Å
C13H25sing1.08Å1.08Å
C14H26sing1.08Å1.08Å
C12H27sing1.09Å1.10Å
O15H28sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2'C2'C3'114.6°110.9°
O2'C2'C1'111.0°110.9°
O2'C2'H8110.2°110.8°
C2'O2'H19109.5°114.0°
C14C13C12120.3°122.8°
C13C14C9120.5°122.8°
C14C13H25119.8°118.5°
C13C14H26119.8°118.6°
C13C12O15120.9°109.1°
C13C12C11119.4°111.2°
C12C13H25119.9°118.6°
C13C12H2790.1°109.1°
O3'C3'C2'111.0°110.5°
O3'C3'C4'107.9°110.5°
O3'C3'H9112.2°110.5°
C3'O3'H10109.5°114.0°
C14C9C7119.4°109.1°
C14C9C10119.0°111.3°
C14C9H2291.1°109.1°
C9C14H26119.8°118.6°
OCOXT122.1°120.0°
OCCA118.2°120.0°
O15C12C11119.7°109.1°
O15C12H2790.1°109.2°
C12O15H28109.5°114.0°
C12C11C10120.4°122.9°
C12C11H24119.8°118.6°
C11C12H2790.1°109.2°
C2'C3'C4'104.0°104.2°
C3'C2'C1'103.1°102.1°
C3'C2'H8108.8°110.9°
C2'C3'H9110.7°110.5°
C3'C4'C5'116.9°109.8°
C3'C4'O4'105.6°107.3°
C3'C4'H4106.5°110.0°
C4'C3'H9110.7°110.5°
C7C9C10121.5°109.1°
C9C7C3126.5°120.0°
C9C7H7116.7°120.0°
C7C9H2291.0°109.1°
C9C10C11120.4°122.8°
C10C9H2291.1°109.1°
C9C10H23119.8°118.6°
C7C3C1119.8°120.0°
C3C7H7116.7°120.0°
C7C3H11120.1°120.0°
C2'C1'N9115.9°110.6°
C2'C1'O4'104.2°103.5°
C2'C1'H5107.9°110.7°
C1'C2'H8108.9°110.9°
O2C1C3121.1°120.0°
O2C1N123.4°120.0°
C11C10H23119.8°118.6°
C10C11H24119.8°118.6°
OXTCCA119.7°120.0°
COXTH14109.5°117.0°
CCAN108.6°109.5°
CCACB110.0°109.5°
CCAH13108.7°109.5°
C3C1N115.5°120.0°
C1C3H11120.1°120.0°
C1NCA125.5°120.0°
C1NH12117.3°120.0°
NCACB111.7°109.5°
CANH12117.3°120.0°
NCAH13109.4°109.4°
CACBCG115.4°109.5°
CBCAH13108.4°109.5°
CACBH15108.0°109.5°
CACBH16108.0°109.5°
C5'SDCG110.6°103.0°
SDC5'C4'113.9°109.4°
SDC5'H2108.4°109.5°
SDC5'H3108.4°109.5°
SDCGCB115.2°109.5°
SDCGH17108.1°109.5°
SDCGH18108.0°109.5°
C5'C4'O4'113.2°109.9°
C4'C5'H2108.3°109.5°
C4'C5'H3108.4°109.4°
C5'C4'H4106.4°109.9°
C4'O4'C1'104.4°107.0°
O4'C4'H4107.7°109.9°
N9C1'O4'111.4°110.6°
C1'N9C8127.6°126.3°
C1'N9C4124.1°126.3°
N9C1'H5108.3°110.6°
O4'C1'H5109.1°110.6°
N9C8N7109.4°110.0°
C8N9C4108.3°107.4°
N9C8H6125.3°125.0°
C8N7C5107.4°109.4°
N7C8H6125.3°125.1°
N9C4C5107.5°106.0°
N9C4N3132.7°134.9°
CGCBH15108.0°109.5°
CGCBH16108.0°109.5°
CBCGH17108.0°109.5°
CBCGH18108.0°109.4°
N7C5C4107.4°107.2°
N7C5C6133.8°134.7°
C5C4N3119.8°119.1°
C4C5C6118.8°118.1°
C4N3C2120.0°120.6°
C5C6N6120.5°120.8°
C5C6N1119.3°118.4°
N3C2N1121.4°122.5°
N3C2H1119.3°118.7°
N6C6N1120.1°120.8°
C6N6H20109.5°119.9°
C6N6H21109.5°120.0°
C6N1C2120.5°121.2°
N1C2H1119.3°118.8°
H2C5'H3109.5°109.5°
H15CBH16109.5°109.4°
H17CGH18109.4°109.5°
H20N6H21109.5°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2'C2'C3'O3'13.0°20.4°
O2'C2'C3'C1'120.7°118.2°
O2'C2'C3'H8123.8°123.6°
O2'C2'C3'C4'128.7°139.1°
O2'C2'C1'H8121.4°123.6°
O2'C2'C1'N982.7°86.2°
O2'C2'C1'O4'154.7°155.2°
O2'C2'C1'H538.9°36.7°
O2'C2'C3'H9112.3°102.2°
C14C13C12H25180.0°180.0°
C13C14C9H26180.0°180.0°
C14C13C12O15179.9°100.8°
C14C13C12C110.2°19.6°
C13C14C9C7178.1°100.9°
C13C14C9C101.7°19.6°
C13C14C9H2290.1°140.0°
C14C13C12H2789.9°140.0°
C12C13C14C90.7°0.0°
C13C12O15C11179.7°121.6°
C13C12O15H2790.2°119.1°
C13C12C11H2790.1°120.4°
C13C12C11C100.2°19.5°
C13C12C11H24179.8°160.4°
C12C13C14H26179.3°180.0°
C13C12O15H28180.0°58.3°
O3'C3'C2'C4'115.8°118.7°
O3'C3'C2'H9125.3°122.6°
O3'C3'C4'H9123.1°122.7°
O3'C3'C2'C1'107.7°97.8°
O3'C3'C4'C5'97.2°119.8°
O3'C3'C4'O4'135.9°120.7°
O3'C3'C4'H421.6°1.2°
O3'C3'C2'H8136.7°144.0°
C14C9C7C10176.3°121.8°
C14C9C7H2291.8°119.1°
C14C9C10H2291.8°120.4°
C14C9C7C3158.0°118.3°
C14C9C10C111.7°19.6°
C14C9C7H722.0°61.8°
C14C9C10H23178.3°160.4°
C9C14C13H25179.3°180.0°
OCOXTCA179.3°179.9°
OCCAN152.4°0.1°
OCCACB85.1°120.0°
OCCAH1333.5°120.0°
OCOXTH140.0°0.1°
O15C12C11H2790.2°119.2°
O15C12C11C10179.8°100.8°
O15C12C11H240.2°79.2°
O15C12C13H250.1°79.2°
C12C11C10C90.8°0.0°
C12C11C10H24180.0°179.9°
C12C11C10H23179.2°180.0°
C11C12C13H25179.8°160.4°
C11C12O15H280.3°180.0°
C2'C3'C4'H9118.9°118.7°
C3'C2'C1'H8115.5°118.1°
C2'C3'C4'C5'144.9°121.5°
C2'C3'C4'O4'18.0°2.0°
C3'C2'C1'N9154.2°155.5°
C3'C2'C1'O4'31.5°37.0°
C2'C3'C4'H496.4°117.5°
C3'C2'C1'H584.3°81.5°
C2'C3'O3'H10180.0°61.4°
C3'C2'O2'H19180.0°67.2°
C4'C3'C2'C1'8.0°20.9°
C3'C4'C5'SD60.9°175.7°
C3'C4'C5'O4'123.1°117.8°
C3'C4'C5'H4118.8°121.1°
C3'C4'O4'H4113.5°119.6°
C3'C4'O4'C1'38.9°26.5°
C3'C4'C5'H259.8°55.7°
C3'C4'C5'H3178.5°64.3°
C4'C3'C2'H8107.5°97.3°
C4'C3'O3'H1066.7°176.2°
C7C9C10H2291.8°119.1°
C9C7C3H7180.0°179.9°
C7C9C10C11178.1°100.9°
C9C7C3C1177.5°180.0°
C9C7C3H112.5°0.1°
C7C9C10H231.9°79.1°
C7C9C14H261.9°79.1°
C10C9C7C325.6°119.9°
C9C10C11H23180.0°180.0°
C10C9C7H7154.3°60.0°
C9C10C11H24179.2°180.0°
C10C9C14H26178.3°160.5°
C7C3C1O224.7°0.0°
C7C3C1H11180.0°180.0°
C7C3C1N154.0°179.9°
C3C7C9H2266.2°0.8°
C2'C1'O4'C4'44.3°40.0°
C2'C1'N9O4'118.8°114.1°
C2'C1'N9H5121.3°123.1°
C2'C1'O4'H5114.9°118.6°
C2'C1'N9C845.5°90.5°
C2'C1'N9C4135.3°89.5°
C1'C2'C3'H9127.0°139.6°
C1'C2'O2'H1963.7°180.0°
O2C1C3N178.7°179.9°
O2C1NCA1.8°0.1°
O2C1C3H11155.3°179.9°
O2C1NH12178.3°180.0°
C11C10C9H2290.1°140.0°
C10C11C12H2790.0°139.9°
OXTCCAN27.0°180.0°
OXTCCACB95.6°60.0°
OXTCCAH13145.9°60.1°
CCANC1141.0°84.9°
CCANCB121.4°120.1°
CCANH13118.5°120.0°
CCACBH13118.8°120.0°
CCACBCG154.6°175.0°
CCANH1239.0°95.0°
CACOXTH14179.3°180.0°
CCACBH1584.6°65.0°
CCACBH1633.7°55.0°
C3C1NCA176.9°180.0°
C1C3C7H72.5°0.1°
C3C1NH123.1°0.0°
C1NCAH12180.0°180.0°
C1NCACB97.6°155.0°
NC1C3H1126.0°0.0°
C1NCAH1322.5°35.0°
NCACBH13120.6°120.0°
NCACBCG84.8°65.0°
NCACBH1536.1°55.0°
NCACBH16154.3°175.0°
CACBCGSD54.0°180.0°
CACBCGH15120.9°120.0°
CACBCGH16120.9°120.0°
CBCANH1282.5°25.0°
CACBH15H16117.3°120.0°
CACBCGH17174.8°60.0°
CACBCGH1866.9°60.0°
SDC5'C4'H2120.7°120.0°
SDC5'C4'H3120.7°119.9°
SDC5'C4'O4'62.2°66.4°
C5'SDCGCB112.7°180.0°
SDC5'H2H3118.0°120.0°
SDC5'C4'H4179.7°54.6°
C5'SDCGH178.2°60.0°
C5'SDCGH18126.5°60.0°
CGSDC5'C4'90.6°180.0°
SDCGCBH17120.9°120.0°
SDCGCBH18120.8°120.0°
CGSDC5'H2148.8°60.0°
CGSDC5'H330.1°60.0°
SDCGCBH15174.8°59.9°
SDCGCBH1666.9°60.0°
SDCGH17H18117.4°120.0°
C5'C4'O4'H4117.4°121.0°
C5'C4'O4'C1'168.0°145.9°
C4'C5'H2H3118.0°120.0°
C5'C4'C3'H926.0°2.8°
C4'O4'C1'N9169.9°158.6°
O4'C4'C5'H2177.1°173.5°
O4'C4'C5'H358.5°53.5°
C4'O4'C1'H570.7°78.6°
O4'C4'C3'H9101.0°116.6°
N9C1'O4'H5119.5°122.9°
C1'N9C8C4179.3°180.0°
C1'N9C8N7179.2°180.0°
C1'N9C4C5179.3°180.0°
C1'N9C4N30.2°0.1°
C1'N9C8H60.8°0.1°
N9C1'C2'H838.8°37.4°
O4'C1'N9C873.3°23.6°
O4'C1'N9C4105.9°156.4°
C1'O4'C4'H474.6°93.1°
O4'C1'C2'H883.9°81.2°
N9C8N7H6180.0°179.9°
N9C8N7C50.1°0.0°
C8N9C4C50.0°0.0°
C8N9C4N3179.6°179.9°
C8N9C1'H5166.7°146.5°
N7C8N9C40.1°0.0°
C8N7C5C40.1°0.0°
C8N7C5C6179.9°180.0°
N9C4C5N70.0°0.0°
N9C4C5N3179.6°180.0°
N9C4C5C6179.8°180.0°
N9C4N3C2179.9°179.7°
C4N9C1'H514.0°33.5°
C4N9C8H6179.9°179.9°
CGCBCAH1335.8°55.0°
CGCBH15H16117.3°119.9°
CBCGH17H18117.4°120.0°
N7C5C4C6179.8°180.0°
N7C5C4N3179.5°180.0°
N7C5C6N60.6°0.0°
N7C5C6N1179.9°179.7°
C5N7C8H6179.8°179.9°
C5C4N3C20.4°0.4°
C4C5C6N6179.7°180.0°
C4C5C6N10.3°0.3°
N3C4C5C60.2°0.0°
C4N3C2N10.1°0.4°
C4N3C2H1180.0°179.7°
C5C6N6N1179.3°179.7°
C5C6N1C20.8°0.3°
C5C6N6H20179.3°179.7°
C5C6N6H2160.7°0.3°
N3C2N1C60.7°0.0°
N3C2N1H1180.0°179.9°
N6C6N1C2179.8°180.0°
C6N6H20H21120.0°179.9°
C6N1C2H1179.4°180.0°
N1C6N6H200.0°0.1°
N1C6N6H21120.0°180.0°
H2C5'C4'H459.0°65.4°
H3C5'C4'H459.7°174.5°
H4C4'C3'H9144.7°123.9°
H5C1'C2'H8160.3°160.3°
H7C7C3H11177.5°180.0°
H7C7C9H22113.8°179.2°
H8C2'C3'H911.4°21.4°
H8C2'O2'H1957.0°56.4°
H9C3'O3'H1055.5°61.1°
H12NCAH13157.5°145.0°
H13CACBH15156.7°175.0°
H13CACBH1685.1°65.1°
H15CBCGH1764.3°179.9°
H15CBCGH1854.0°60.0°
H16CBCGH1754.0°60.0°
H16CBCGH18172.3°180.0°
H22C9C10H2389.9°40.0°
H22C9C14H2689.9°40.0°
H23C10C11H240.8°0.0°
H24C11C12H2790.0°40.0°
H25C13C14H260.7°0.0°
H25C13C12H2790.1°40.0°
H27C12O15H2889.8°60.7°

219140

PDB entries from 2024-05-01

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