U4S
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | C5 | sing | 1.42Å | 1.39Å | |
| C4 | N3 | sing | 1.35Å | 1.40Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.41Å | |
| N1 | C1' | sing | 1.46Å | 1.50Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| N3 | C2 | sing | 1.34Å | 1.40Å | |
| CAJ | CAH | sing | 1.54Å | 1.52Å | |
| CAJ | NAT | sing | 1.49Å | 1.48Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | NAT | sing | 1.47Å | 1.47Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| O4' | C1' | sing | 1.43Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.55Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| CAI | CAG | sing | 1.54Å | 1.53Å | |
| CAI | NAT | sing | 1.49Å | 1.48Å | |
| CAG | CAH | sing | 1.54Å | 1.52Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| CAJ | HAJ | sing | 1.09Å | 1.10Å | |
| CAJ | HAJA | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| CAI | HAI | sing | 1.09Å | 1.10Å | |
| CAI | HAIA | sing | 1.09Å | 1.10Å | |
| CAG | HAG | sing | 1.09Å | 1.10Å | |
| CAG | HAGA | sing | 1.09Å | 1.10Å | |
| CAH | HAH | sing | 1.09Å | 1.10Å | |
| CAH | HAHA | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5 | C4 | N3 | 120.1° | 119.3° |
| C5 | C4 | O4 | 120.5° | 120.4° |
| C4 | C5 | C6 | 119.3° | 119.1° |
| C4 | C5 | H5 | 120.4° | 120.4° |
| N3 | C4 | O4 | 119.4° | 120.3° |
| C4 | N3 | C2 | 120.9° | 120.3° |
| C4 | N3 | HN3 | 119.6° | 119.8° |
| C5 | C6 | N1 | 121.2° | 119.7° |
| C6 | C5 | H5 | 120.3° | 120.5° |
| C5 | C6 | H6 | 119.4° | 120.2° |
| C6 | N1 | C1' | 121.2° | 119.7° |
| C6 | N1 | C2 | 119.1° | 120.6° |
| N1 | C6 | H6 | 119.4° | 120.1° |
| C1' | N1 | C2 | 119.7° | 119.7° |
| N1 | C1' | O4' | 109.3° | 109.8° |
| N1 | C1' | C2' | 116.8° | 109.8° |
| N1 | C1' | H1' | 103.2° | 109.8° |
| N1 | C2 | N3 | 119.4° | 120.9° |
| N1 | C2 | O2 | 120.7° | 119.5° |
| N3 | C2 | O2 | 119.9° | 119.6° |
| C2 | N3 | HN3 | 119.6° | 119.9° |
| CAH | CAJ | NAT | 104.9° | 104.6° |
| CAJ | CAH | CAG | 101.3° | 105.1° |
| CAH | CAJ | HAJ | 111.0° | 110.4° |
| CAH | CAJ | HAJA | 112.0° | 110.4° |
| CAJ | CAH | HAH | 112.3° | 110.3° |
| CAJ | CAH | HAHA | 114.0° | 110.3° |
| CAJ | NAT | C5' | 108.3° | 111.0° |
| CAJ | NAT | CAI | 106.9° | 104.2° |
| NAT | CAJ | HAJ | 111.0° | 110.4° |
| NAT | CAJ | HAJA | 112.0° | 110.4° |
| C4' | C5' | NAT | 112.2° | 109.5° |
| C5' | C4' | O4' | 117.9° | 110.3° |
| C5' | C4' | C3' | 110.1° | 110.3° |
| C4' | C5' | H5' | 108.6° | 109.5° |
| C4' | C5' | H5'A | 107.9° | 109.5° |
| C5' | C4' | H4' | 100.6° | 110.3° |
| C5' | NAT | CAI | 107.5° | 111.0° |
| NAT | C5' | H5' | 108.6° | 109.5° |
| NAT | C5' | H5'A | 107.9° | 109.4° |
| O4' | C4' | C3' | 99.7° | 105.1° |
| C4' | O4' | C1' | 103.4° | 110.0° |
| O4' | C4' | H4' | 110.9° | 110.3° |
| C4' | C3' | O3' | 113.3° | 111.1° |
| C4' | C3' | C2' | 100.7° | 100.9° |
| C3' | C4' | H4' | 118.6° | 110.5° |
| C4' | C3' | H3' | 112.6° | 111.1° |
| O4' | C1' | C2' | 105.1° | 107.6° |
| O4' | C1' | H1' | 115.3° | 109.9° |
| O3' | C3' | C2' | 109.1° | 111.1° |
| O3' | C3' | H3' | 104.7° | 111.0° |
| C3' | O3' | HO3' | 109.5° | 113.9° |
| C3' | C2' | O2' | 103.7° | 110.9° |
| C3' | C2' | C1' | 102.9° | 102.3° |
| C2' | C3' | H3' | 116.6° | 111.2° |
| C3' | C2' | H2' | 117.5° | 110.9° |
| O2' | C2' | C1' | 110.9° | 110.8° |
| O2' | C2' | H2' | 110.3° | 110.7° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 111.1° | 111.0° |
| C2' | C1' | H1' | 107.5° | 109.9° |
| CAG | CAI | NAT | 106.7° | 104.6° |
| CAI | CAG | CAH | 102.1° | 105.0° |
| CAG | CAI | HAI | 110.4° | 110.4° |
| CAG | CAI | HAIA | 111.0° | 110.4° |
| CAI | CAG | HAG | 112.0° | 110.3° |
| CAI | CAG | HAGA | 113.5° | 110.3° |
| NAT | CAI | HAI | 110.4° | 110.4° |
| NAT | CAI | HAIA | 111.0° | 110.4° |
| CAH | CAG | HAG | 112.0° | 110.3° |
| CAH | CAG | HAGA | 113.6° | 110.3° |
| CAG | CAH | HAH | 112.3° | 110.3° |
| CAG | CAH | HAHA | 114.0° | 110.3° |
| HAJ | CAJ | HAJA | 106.0° | 110.4° |
| H5' | C5' | H5'A | 111.7° | 109.5° |
| HAI | CAI | HAIA | 107.4° | 110.4° |
| HAG | CAG | HAGA | 103.9° | 110.4° |
| HAH | CAH | HAHA | 103.4° | 110.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C5 | C4 | N3 | O4 | 179.7° | 179.6° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | N1 | 0.9° | 0.1° |
| C5 | C4 | N3 | C2 | 0.4° | 0.0° |
| C4 | C5 | C6 | H6 | 179.1° | 179.9° |
| C5 | C4 | N3 | HN3 | 179.6° | 179.9° |
| N3 | C4 | C5 | C6 | 0.1° | 0.1° |
| C4 | N3 | C2 | N1 | 0.1° | 0.1° |
| C4 | N3 | C2 | HN3 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.4° | 180.0° |
| N3 | C4 | C5 | H5 | 179.9° | 179.9° |
| O4 | C4 | C5 | C6 | 179.6° | 179.7° |
| O4 | C4 | N3 | C2 | 179.9° | 179.7° |
| O4 | C4 | C5 | H5 | 0.4° | 0.4° |
| O4 | C4 | N3 | HN3 | 0.1° | 0.3° |
| C5 | C6 | N1 | H6 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 179.2° | 180.0° |
| C5 | C6 | N1 | C2 | 1.2° | 0.0° |
| C6 | N1 | C1' | C2 | 178.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.6° | 0.1° |
| C6 | N1 | C1' | O4' | 11.9° | 126.5° |
| C6 | N1 | C1' | C2' | 107.2° | 115.4° |
| C6 | N1 | C2 | O2 | 179.9° | 180.0° |
| N1 | C6 | C5 | H5 | 179.1° | 179.9° |
| C6 | N1 | C1' | H1' | 135.0° | 5.5° |
| C1' | N1 | C2 | N3 | 178.7° | 180.0° |
| N1 | C1' | O4' | C4' | 96.5° | 117.8° |
| N1 | C1' | O4' | C2' | 126.1° | 119.5° |
| N1 | C1' | O4' | H1' | 115.7° | 120.9° |
| N1 | C1' | C2' | C3' | 123.5° | 140.9° |
| N1 | C1' | C2' | O2' | 126.1° | 100.9° |
| N1 | C1' | C2' | H1' | 115.4° | 120.9° |
| C1' | N1 | C2 | O2 | 1.8° | 0.1° |
| C1' | N1 | C6 | H6 | 0.8° | 0.0° |
| N1 | C1' | C2' | H2' | 3.0° | 22.6° |
| N1 | C2 | N3 | O2 | 179.5° | 179.9° |
| C2 | N1 | C1' | O4' | 166.1° | 53.6° |
| C2 | N1 | C1' | C2' | 74.8° | 64.5° |
| C2 | N1 | C6 | H6 | 178.8° | 180.0° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C1' | H1' | 43.0° | 174.5° |
| CAH | CAJ | NAT | HAJ | 120.0° | 118.8° |
| CAH | CAJ | NAT | HAJA | 121.7° | 118.8° |
| CAH | CAJ | NAT | C5' | 138.5° | 159.0° |
| CAJ | CAH | CAG | CAI | 40.5° | 0.0° |
| CAH | CAJ | NAT | CAI | 22.9° | 39.5° |
| CAJ | CAH | CAG | HAH | 120.0° | 118.9° |
| CAJ | CAH | CAG | HAHA | 122.9° | 118.9° |
| CAH | CAJ | HAJ | HAJA | 121.8° | 122.4° |
| CAJ | CAH | CAG | HAG | 79.5° | 118.9° |
| CAJ | CAH | CAG | HAGA | 163.2° | 118.9° |
| CAJ | CAH | HAH | HAHA | 123.3° | 122.2° |
| CAJ | NAT | C5' | C4' | 106.4° | 170.1° |
| CAJ | NAT | C5' | CAI | 115.2° | 115.4° |
| CAJ | NAT | CAI | CAG | 3.1° | 39.5° |
| NAT | CAJ | CAH | CAG | 39.9° | 23.9° |
| NAT | CAJ | HAJ | HAJA | 121.9° | 122.4° |
| CAJ | NAT | C5' | H5' | 13.6° | 50.0° |
| CAJ | NAT | C5' | H5'A | 134.8° | 70.0° |
| CAJ | NAT | CAI | HAI | 116.9° | 158.3° |
| CAJ | NAT | CAI | HAIA | 124.1° | 79.3° |
| NAT | CAJ | CAH | HAH | 80.1° | 95.0° |
| NAT | CAJ | CAH | HAHA | 162.7° | 142.8° |
| C4' | C5' | NAT | H5' | 120.0° | 120.1° |
| C4' | C5' | NAT | H5'A | 118.8° | 120.0° |
| C5' | C4' | O4' | C3' | 119.1° | 118.9° |
| C5' | C4' | O4' | H4' | 115.2° | 122.1° |
| C5' | C4' | C3' | H4' | 115.0° | 122.2° |
| C5' | C4' | O4' | C1' | 169.2° | 143.3° |
| C5' | C4' | C3' | O3' | 68.4° | 86.8° |
| C5' | C4' | C3' | C2' | 175.2° | 155.3° |
| C4' | C5' | NAT | CAI | 138.4° | 74.6° |
| C4' | C5' | H5' | H5'A | 118.9° | 120.0° |
| C5' | C4' | C3' | H3' | 50.3° | 37.3° |
| NAT | C5' | C4' | O4' | 29.0° | 61.5° |
| NAT | C5' | C4' | C3' | 142.5° | 177.1° |
| C5' | NAT | CAI | CAG | 113.0° | 159.1° |
| C5' | NAT | CAJ | HAJ | 18.4° | 40.2° |
| C5' | NAT | CAJ | HAJA | 99.8° | 82.2° |
| NAT | C5' | H5' | H5'A | 118.9° | 119.9° |
| NAT | C5' | C4' | H4' | 91.6° | 60.6° |
| C5' | NAT | CAI | HAI | 127.0° | 82.1° |
| C5' | NAT | CAI | HAIA | 8.1° | 40.2° |
| O4' | C4' | C3' | H4' | 120.3° | 118.9° |
| O4' | C4' | C3' | O3' | 167.0° | 154.4° |
| O4' | C4' | C3' | C2' | 50.6° | 36.5° |
| C4' | O4' | C1' | C2' | 29.6° | 1.7° |
| O4' | C4' | C5' | H5' | 91.0° | 58.5° |
| O4' | C4' | C5' | H5'A | 147.8° | 178.6° |
| O4' | C4' | C3' | H3' | 74.4° | 81.5° |
| C4' | O4' | C1' | H1' | 147.8° | 121.3° |
| C3' | C4' | O4' | C1' | 50.1° | 24.5° |
| C4' | C3' | O3' | C2' | 111.3° | 111.5° |
| C4' | C3' | O3' | H3' | 123.1° | 124.2° |
| C4' | C3' | C2' | H3' | 122.2° | 118.0° |
| C4' | C3' | C2' | O2' | 147.6° | 152.3° |
| C4' | C3' | C2' | C1' | 31.9° | 34.2° |
| C3' | C4' | C5' | H5' | 22.5° | 57.1° |
| C3' | C4' | C5' | H5'A | 98.7° | 62.9° |
| C4' | C3' | O3' | HO3' | 14.4° | 180.0° |
| C4' | C3' | C2' | H2' | 90.4° | 84.2° |
| O4' | C1' | C2' | C3' | 2.3° | 21.4° |
| O4' | C1' | C2' | O2' | 112.6° | 139.6° |
| O4' | C1' | C2' | H1' | 123.3° | 119.6° |
| C1' | O4' | C4' | H4' | 75.6° | 94.6° |
| O4' | C1' | C2' | H2' | 124.3° | 97.0° |
| O3' | C3' | C2' | H3' | 118.4° | 124.2° |
| O3' | C3' | C2' | O2' | 93.0° | 89.8° |
| O3' | C3' | C2' | C1' | 151.4° | 152.0° |
| O3' | C3' | C4' | H4' | 46.6° | 35.5° |
| O3' | C3' | C2' | H2' | 29.1° | 33.6° |
| C3' | C2' | O2' | C1' | 109.8° | 112.8° |
| C3' | C2' | O2' | H2' | 126.7° | 123.5° |
| C3' | C2' | C1' | H2' | 126.6° | 118.3° |
| C2' | C3' | C4' | H4' | 69.8° | 82.4° |
| C2' | C3' | O3' | HO3' | 96.9° | 68.5° |
| C3' | C2' | O2' | HO2' | 51.4° | 61.4° |
| C3' | C2' | C1' | H1' | 121.1° | 98.2° |
| O2' | C2' | C1' | H2' | 123.1° | 123.5° |
| O2' | C2' | C3' | H3' | 25.4° | 34.4° |
| O2' | C2' | C1' | H1' | 10.7° | 20.0° |
| C1' | C2' | C3' | H3' | 90.3° | 83.8° |
| C1' | C2' | O2' | HO2' | 161.2° | 174.2° |
| O2 | C2 | N3 | HN3 | 0.6° | 0.1° |
| CAG | CAI | NAT | HAI | 120.0° | 118.8° |
| CAG | CAI | NAT | HAIA | 121.0° | 118.8° |
| CAI | CAG | CAH | HAG | 120.0° | 118.9° |
| CAI | CAG | CAH | HAGA | 122.6° | 118.9° |
| CAG | CAI | HAI | HAIA | 121.1° | 122.4° |
| CAI | CAG | HAG | HAGA | 123.0° | 122.2° |
| CAI | CAG | CAH | HAH | 79.4° | 118.9° |
| CAI | CAG | CAH | HAHA | 163.4° | 118.9° |
| NAT | CAI | CAG | CAH | 27.7° | 23.9° |
| CAI | NAT | CAJ | HAJ | 97.1° | 79.3° |
| CAI | NAT | CAJ | HAJA | 144.6° | 158.3° |
| CAI | NAT | C5' | H5' | 101.6° | 165.4° |
| CAI | NAT | C5' | H5'A | 19.6° | 45.4° |
| NAT | CAI | HAI | HAIA | 121.1° | 122.4° |
| NAT | CAI | CAG | HAG | 92.3° | 142.8° |
| NAT | CAI | CAG | HAGA | 150.4° | 95.0° |
| CAG | CAH | CAJ | HAJ | 80.1° | 94.9° |
| CAG | CAH | CAJ | HAJA | 161.6° | 142.6° |
| CAH | CAG | CAI | HAI | 92.3° | 142.7° |
| CAH | CAG | CAI | HAIA | 148.7° | 94.9° |
| CAH | CAG | HAG | HAGA | 123.0° | 122.2° |
| CAG | CAH | HAH | HAHA | 123.3° | 122.2° |
| H5 | C5 | C6 | H6 | 0.9° | 0.1° |
| HAJ | CAJ | CAH | HAH | 159.9° | 146.2° |
| HAJ | CAJ | CAH | HAHA | 42.7° | 24.0° |
| HAJA | CAJ | CAH | HAH | 41.6° | 23.8° |
| HAJA | CAJ | CAH | HAHA | 75.5° | 98.5° |
| H5' | C5' | C4' | H4' | 148.4° | 179.4° |
| H5'A | C5' | C4' | H4' | 27.2° | 59.4° |
| H4' | C4' | C3' | H3' | 165.3° | 159.6° |
| H3' | C3' | O3' | HO3' | 137.6° | 55.8° |
| H3' | C3' | C2' | H2' | 147.4° | 157.8° |
| H2' | C2' | O2' | HO2' | 75.3° | 62.1° |
| H2' | C2' | C1' | H1' | 112.3° | 143.4° |
| HAI | CAI | CAG | HAG | 147.7° | 98.4° |
| HAI | CAI | CAG | HAGA | 30.4° | 23.8° |
| HAIA | CAI | CAG | HAG | 28.7° | 24.0° |
| HAIA | CAI | CAG | HAGA | 88.6° | 146.2° |
| HAG | CAG | CAH | HAH | 160.5° | 122.2° |
| HAG | CAG | CAH | HAHA | 43.4° | 0.0° |
| HAGA | CAG | CAH | HAH | 43.2° | 0.0° |
| HAGA | CAG | CAH | HAHA | 73.9° | 122.2° |
