U4M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| N3 | C2 | sing | 1.35Å | 1.40Å | |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.39Å | |
| C2 | N1 | sing | 1.35Å | 1.33Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| N1 | C6 | sing | 1.37Å | 1.42Å | |
| N1 | C1' | sing | 1.46Å | 1.49Å | |
| C1' | O4' | sing | 1.44Å | 1.48Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| O4' | C4' | sing | 1.43Å | 1.44Å | |
| CM | C4' | sing | 1.53Å | 1.53Å | |
| F2' | C2' | sing | 1.40Å | 1.36Å | |
| C4' | C5' | sing | 1.53Å | 1.48Å | |
| C4' | C3' | sing | 1.54Å | 1.56Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| O5' | C5' | sing | 1.43Å | 1.52Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| OP2 | P | doub | 1.48Å | 1.48Å | |
| P | OP1 | sing | 1.61Å | 1.48Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | H6L | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CM | HM3 | sing | 1.09Å | 1.10Å | |
| CM | HM1 | sing | 1.09Å | 1.10Å | |
| CM | HM2 | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O3' | H6M | sing | 0.97Å | 0.95Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | C4 | N3 | 119.3° | 120.3° |
| O4 | C4 | C5 | 120.7° | 120.3° |
| C4 | N3 | C2 | 119.7° | 120.3° |
| N3 | C4 | C5 | 120.1° | 119.4° |
| C4 | N3 | H3 | 120.1° | 119.9° |
| N3 | C2 | O2 | 119.1° | 119.5° |
| N3 | C2 | N1 | 121.0° | 120.9° |
| C2 | N3 | H3 | 120.1° | 119.8° |
| O2 | C2 | N1 | 120.0° | 119.6° |
| C4 | C5 | C6 | 119.3° | 119.1° |
| C4 | C5 | H5 | 120.4° | 120.4° |
| C2 | N1 | C6 | 120.5° | 120.6° |
| C2 | N1 | C1' | 117.3° | 119.7° |
| C5 | C6 | N1 | 119.5° | 119.7° |
| C6 | C5 | H5 | 120.4° | 120.4° |
| C5 | C6 | H6 | 120.2° | 120.2° |
| C6 | N1 | C1' | 122.2° | 119.7° |
| N1 | C6 | H6 | 120.3° | 120.1° |
| N1 | C1' | O4' | 104.9° | 110.4° |
| N1 | C1' | C2' | 114.8° | 110.3° |
| N1 | C1' | H1' | 109.9° | 110.3° |
| O4' | C1' | C2' | 107.8° | 105.2° |
| C1' | O4' | C4' | 107.1° | 110.0° |
| O4' | C1' | H1' | 109.9° | 110.3° |
| C1' | C2' | F2' | 106.4° | 111.1° |
| C1' | C2' | C3' | 100.3° | 100.9° |
| C2' | C1' | H1' | 109.3° | 110.3° |
| C1' | C2' | H2' | 110.3° | 111.1° |
| O4' | C4' | CM | 108.0° | 109.9° |
| O4' | C4' | C5' | 116.3° | 109.8° |
| O4' | C4' | C3' | 102.9° | 107.6° |
| CM | C4' | C5' | 104.3° | 109.8° |
| CM | C4' | C3' | 112.4° | 109.8° |
| C4' | CM | HM3 | 109.5° | 109.4° |
| C4' | CM | HM1 | 109.5° | 109.5° |
| C4' | CM | HM2 | 109.4° | 109.5° |
| F2' | C2' | C3' | 115.3° | 111.1° |
| F2' | C2' | H2' | 112.9° | 111.1° |
| C5' | C4' | C3' | 113.0° | 109.8° |
| C4' | C5' | O5' | 102.3° | 109.5° |
| C4' | C5' | H6L | 111.3° | 109.5° |
| C4' | C5' | H5' | 111.2° | 109.4° |
| C4' | C3' | C2' | 102.0° | 102.2° |
| C4' | C3' | O3' | 111.8° | 110.9° |
| C4' | C3' | H3' | 109.3° | 111.1° |
| C2' | C3' | O3' | 111.8° | 110.8° |
| C3' | C2' | H2' | 110.7° | 111.1° |
| C2' | C3' | H3' | 110.0° | 110.8° |
| C5' | O5' | P | 123.3° | 123.0° |
| O5' | C5' | H6L | 111.2° | 109.5° |
| O5' | C5' | H5' | 111.3° | 109.5° |
| O5' | P | OP2 | 108.6° | 109.5° |
| O5' | P | OP1 | 109.0° | 109.5° |
| O5' | P | OP3 | 103.1° | 109.4° |
| OP2 | P | OP1 | 119.2° | 109.5° |
| OP2 | P | OP3 | 108.4° | 109.5° |
| P | OP1 | H1 | 109.5° | 114.0° |
| OP1 | P | OP3 | 107.2° | 109.5° |
| O3' | C3' | H3' | 111.5° | 110.8° |
| C3' | O3' | H6M | 109.5° | 114.1° |
| H6L | C5' | H5' | 109.4° | 109.5° |
| HM3 | CM | HM1 | 109.5° | 109.4° |
| HM3 | CM | HM2 | 109.5° | 109.5° |
| HM1 | CM | HM2 | 109.5° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | C4 | N3 | C5 | 179.5° | 180.0° |
| O4 | C4 | N3 | C2 | 179.7° | 180.0° |
| O4 | C4 | C5 | C6 | 179.8° | 180.0° |
| O4 | C4 | C5 | H5 | 0.2° | 0.1° |
| O4 | C4 | N3 | H3 | 0.3° | 0.0° |
| C4 | N3 | C2 | H3 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.6° | 179.8° |
| C4 | N3 | C2 | N1 | 0.0° | 0.1° |
| N3 | C4 | C5 | C6 | 0.3° | 0.0° |
| N3 | C4 | C5 | H5 | 179.7° | 179.9° |
| N3 | C2 | O2 | N1 | 179.6° | 179.7° |
| C2 | N3 | C4 | C5 | 0.2° | 0.1° |
| N3 | C2 | N1 | C6 | 0.0° | 0.1° |
| N3 | C2 | N1 | C1' | 179.7° | 180.0° |
| O2 | C2 | N1 | C6 | 179.6° | 179.7° |
| O2 | C2 | N1 | C1' | 0.1° | 0.3° |
| O2 | C2 | N3 | H3 | 0.4° | 0.3° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | C6 | H6 | 179.7° | 179.9° |
| C5 | C4 | N3 | H3 | 179.8° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| C2 | N1 | C6 | C1' | 179.7° | 179.9° |
| C2 | N1 | C1' | O4' | 157.1° | 126.4° |
| C2 | N1 | C1' | C2' | 84.8° | 117.8° |
| C2 | N1 | C1' | H1' | 39.0° | 4.2° |
| C2 | N1 | C6 | H6 | 179.8° | 179.9° |
| N1 | C2 | N3 | H3 | 180.0° | 179.9° |
| C5 | C6 | N1 | H6 | 180.0° | 179.9° |
| C5 | C6 | N1 | C1' | 179.5° | 180.0° |
| C6 | N1 | C1' | O4' | 22.6° | 53.5° |
| C6 | N1 | C1' | C2' | 95.5° | 62.2° |
| C6 | N1 | C1' | H1' | 140.8° | 175.7° |
| N1 | C6 | C5 | H5 | 179.7° | 179.9° |
| N1 | C1' | O4' | C2' | 122.8° | 119.0° |
| N1 | C1' | O4' | H1' | 118.1° | 122.2° |
| N1 | C1' | C2' | H1' | 124.0° | 122.1° |
| N1 | C1' | O4' | C4' | 123.1° | 143.3° |
| N1 | C1' | C2' | F2' | 149.6° | 86.7° |
| N1 | C1' | C2' | C3' | 90.0° | 155.4° |
| N1 | C1' | C2' | H2' | 26.8° | 37.5° |
| C1' | N1 | C6 | H6 | 0.5° | 0.0° |
| O4' | C1' | C2' | H1' | 119.5° | 118.9° |
| C1' | O4' | C4' | CM | 92.9° | 117.9° |
| O4' | C1' | C2' | F2' | 93.9° | 154.3° |
| C1' | O4' | C4' | C5' | 150.3° | 121.2° |
| C1' | O4' | C4' | C3' | 26.2° | 1.7° |
| O4' | C1' | C2' | C3' | 26.6° | 36.4° |
| O4' | C1' | C2' | H2' | 143.3° | 81.5° |
| C2' | C1' | O4' | C4' | 0.2° | 24.4° |
| C1' | C2' | F2' | C3' | 110.2° | 111.6° |
| C1' | C2' | F2' | H2' | 121.1° | 124.2° |
| C1' | C2' | C3' | C4' | 41.3° | 34.1° |
| C1' | C2' | C3' | H2' | 116.5° | 117.9° |
| C1' | C2' | C3' | O3' | 160.9° | 84.1° |
| C1' | C2' | C3' | H3' | 74.6° | 152.5° |
| O4' | C4' | CM | C5' | 124.3° | 121.0° |
| O4' | C4' | CM | C3' | 112.9° | 118.2° |
| O4' | C4' | C5' | C3' | 118.8° | 118.2° |
| O4' | C4' | C3' | C2' | 43.2° | 21.3° |
| O4' | C4' | C5' | O5' | 56.6° | 66.8° |
| O4' | C4' | C3' | O3' | 162.8° | 96.8° |
| C4' | O4' | C1' | H1' | 118.9° | 94.5° |
| O4' | C4' | C3' | H3' | 73.2° | 139.6° |
| O4' | C4' | C5' | H6L | 62.2° | 173.1° |
| O4' | C4' | C5' | H5' | 175.5° | 53.1° |
| O4' | C4' | CM | HM3 | 180.0° | 61.6° |
| O4' | C4' | CM | HM1 | 60.0° | 58.3° |
| O4' | C4' | CM | HM2 | 60.0° | 178.4° |
| CM | C4' | C5' | C3' | 122.4° | 120.8° |
| CM | C4' | C3' | C2' | 72.7° | 141.0° |
| CM | C4' | C5' | O5' | 175.4° | 54.2° |
| CM | C4' | C3' | O3' | 46.9° | 22.8° |
| CM | C4' | C3' | H3' | 170.8° | 100.8° |
| CM | C4' | C5' | H6L | 56.5° | 65.9° |
| CM | C4' | C5' | H5' | 65.8° | 174.1° |
| C4' | CM | HM3 | HM1 | 120.0° | 119.9° |
| C4' | CM | HM3 | HM2 | 120.0° | 120.0° |
| C4' | CM | HM1 | HM2 | 120.0° | 120.0° |
| F2' | C2' | C3' | C4' | 72.5° | 152.0° |
| F2' | C2' | C3' | H2' | 129.7° | 124.2° |
| F2' | C2' | C3' | O3' | 47.1° | 33.8° |
| F2' | C2' | C1' | H1' | 25.6° | 35.4° |
| F2' | C2' | C3' | H3' | 171.6° | 89.6° |
| C5' | C4' | C3' | C2' | 169.5° | 98.2° |
| C4' | C5' | O5' | H6L | 118.9° | 120.1° |
| C4' | C5' | O5' | H5' | 118.8° | 119.9° |
| C4' | C5' | O5' | P | 164.2° | 180.0° |
| C5' | C4' | C3' | O3' | 70.8° | 143.6° |
| C5' | C4' | C3' | H3' | 53.1° | 20.0° |
| C4' | C5' | H6L | H5' | 123.3° | 119.9° |
| C5' | C4' | CM | HM3 | 55.7° | 59.4° |
| C5' | C4' | CM | HM1 | 64.3° | 179.3° |
| C5' | C4' | CM | HM2 | 175.7° | 60.7° |
| C4' | C3' | C2' | O3' | 119.6° | 118.2° |
| C4' | C3' | C2' | H3' | 115.9° | 118.4° |
| C3' | C4' | C5' | O5' | 62.2° | 175.0° |
| C4' | C3' | O3' | H3' | 122.7° | 123.8° |
| C4' | C3' | C2' | H2' | 157.8° | 83.8° |
| C3' | C4' | C5' | H6L | 178.9° | 54.9° |
| C3' | C4' | C5' | H5' | 56.7° | 65.0° |
| C3' | C4' | CM | HM3 | 67.1° | 179.8° |
| C3' | C4' | CM | HM1 | 172.9° | 59.9° |
| C3' | C4' | CM | HM2 | 52.9° | 60.1° |
| C4' | C3' | O3' | H6M | 180.0° | 174.2° |
| C2' | C3' | O3' | H3' | 123.7° | 123.4° |
| C3' | C2' | C1' | H1' | 146.1° | 82.5° |
| C2' | C3' | O3' | H6M | 66.4° | 61.4° |
| C5' | O5' | P | OP2 | 176.7° | 55.1° |
| C5' | O5' | P | OP1 | 45.3° | 65.0° |
| O5' | C5' | H6L | H5' | 123.3° | 120.0° |
| C5' | O5' | P | OP3 | 68.4° | 175.0° |
| O5' | P | OP2 | OP1 | 125.6° | 120.0° |
| O5' | P | OP2 | OP3 | 111.4° | 120.0° |
| O5' | P | OP1 | OP3 | 111.0° | 120.0° |
| P | O5' | C5' | H6L | 45.4° | 59.9° |
| P | O5' | C5' | H5' | 76.9° | 60.1° |
| O5' | P | OP1 | H1 | 125.4° | 60.0° |
| O5' | P | OP3 | HOP3 | 115.0° | 180.0° |
| OP2 | P | OP1 | OP3 | 123.5° | 120.0° |
| OP2 | P | OP1 | H1 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 130.0° | 60.0° |
| O3' | C3' | C2' | H2' | 82.6° | 158.0° |
| H1' | C1' | C2' | H2' | 97.2° | 159.6° |
| H2' | C2' | C3' | H3' | 41.9° | 34.6° |
| H3' | C3' | O3' | H6M | 57.3° | 62.0° |
| H5 | C5 | C6 | H6 | 0.3° | 0.2° |
| HM3 | CM | HM1 | HM2 | 120.0° | 120.1° |
| H1 | OP1 | P | OP3 | 123.6° | 60.0° |
