U3P

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.34Å	1.38Å
N1	C6	sing	1.37Å	1.38Å
N1	C1'	sing	1.46Å	1.46Å
C2	N3	sing	1.35Å	1.37Å
C2	O2	doub	1.22Å	1.21Å
N3	C4	sing	1.35Å	1.38Å
N3	HN3	sing	0.97Å	1.02Å
C4	C5	sing	1.42Å	1.45Å
C4	O4	doub	1.22Å	1.24Å
C5	C6	doub	1.35Å	1.35Å
C5	H5	sing	1.08Å	1.10Å
C6	H6	sing	1.08Å	1.10Å
P	O1P	sing	1.61Å	1.48Å
P	O2P	doub	1.48Å	1.48Å
P	O3P	sing	1.61Å	1.48Å
P	O3'	sing	1.61Å	1.60Å
O1P	HOP1	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.43Å
O5'	HO5'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.54Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.46Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.42Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.54Å
C3'	H3'	sing	1.09Å	1.12Å
C2'	O2'	sing	1.43Å	1.42Å
C2'	C1'	sing	1.55Å	1.52Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.11Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	121.6°	120.6°
C2	N1	C1'	120.1°	119.7°
N1	C2	N3	115.5°	120.9°
N1	C2	O2	123.3°	119.5°
C6	N1	C1'	118.1°	119.7°
N1	C6	C5	121.9°	119.7°
N1	C6	H6	120.2°	120.1°
N1	C1'	O4'	109.1°	110.6°
N1	C1'	C2'	114.6°	110.8°
N1	C1'	H1'	105.9°	110.6°
N3	C2	O2	121.2°	119.5°
C2	N3	C4	126.7°	120.3°
C2	N3	HN3	116.2°	119.9°
C4	N3	HN3	117.1°	119.8°
N3	C4	C5	114.3°	119.3°
N3	C4	O4	119.9°	120.4°
C5	C4	O4	125.8°	120.3°
C4	C5	C6	120.0°	119.1°
C4	C5	H5	123.5°	120.4°
C6	C5	H5	116.5°	120.5°
C5	C6	H6	117.9°	120.1°
O1P	P	O2P	108.9°	109.5°
O1P	P	O3P	114.4°	109.5°
O1P	P	O3'	107.1°	109.5°
P	O1P	HOP1	108.9°	106.8°
O2P	P	O3P	113.9°	109.4°
O2P	P	O3'	108.5°	109.5°
O3P	P	O3'	103.6°	109.4°
P	O3P	HOP3	114.4°	106.8°
P	O3'	C3'	120.7°	106.9°
C5'	O5'	HO5'	113.4°	106.8°
O5'	C5'	C4'	113.4°	109.6°
O5'	C5'	H5'1	110.7°	109.5°
O5'	C5'	H5'2	110.8°	109.5°
C4'	C5'	H5'1	110.7°	109.4°
C4'	C5'	H5'2	110.8°	109.4°
C5'	C4'	O4'	111.5°	109.9°
C5'	C4'	C3'	112.8°	110.0°
C5'	C4'	H4'	104.3°	109.8°
H5'1	C5'	H5'2	99.5°	109.4°
O4'	C4'	C3'	104.4°	107.4°
O4'	C4'	H4'	112.7°	109.9°
C4'	O4'	C1'	110.3°	106.9°
C3'	C4'	H4'	111.3°	109.9°
C4'	C3'	O3'	109.0°	110.8°
C4'	C3'	C2'	104.3°	104.0°
C4'	C3'	H3'	113.8°	110.4°
O4'	C1'	C2'	108.8°	103.5°
O4'	C1'	H1'	112.1°	110.5°
O3'	C3'	C2'	111.4°	110.5°
O3'	C3'	H3'	106.9°	110.4°
C2'	C3'	H3'	111.5°	110.5°
C3'	C2'	O2'	113.0°	110.9°
C3'	C2'	C1'	102.2°	102.1°
C3'	C2'	H2'	111.2°	110.9°
O2'	C2'	C1'	107.1°	111.0°
O2'	C2'	H2'	106.7°	110.8°
C2'	O2'	HO2'	112.9°	106.9°
C1'	C2'	H2'	116.7°	110.9°
C2'	C1'	H1'	106.3°	110.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	175.6°	179.8°
N1	C2	N3	O2	179.0°	179.5°
N1	C2	N3	C4	2.1°	0.6°
N1	C2	N3	HN3	178.0°	179.7°
C2	N1	C6	C5	1.4°	0.2°
C2	N1	C6	H6	178.6°	179.8°
C2	N1	C1'	O4'	155.7°	58.4°
C2	N1	C1'	C2'	82.0°	55.8°
C2	N1	C1'	H1'	34.8°	178.9°
C6	N1	C2	N3	0.2°	0.5°
C6	N1	C2	O2	178.8°	180.0°
N1	C6	C5	C4	0.5°	0.0°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	H5	179.5°	180.0°
C6	N1	C1'	O4'	19.9°	121.4°
C6	N1	C1'	C2'	102.3°	124.4°
C6	N1	C1'	H1'	140.8°	1.3°
C1'	N1	C2	N3	175.7°	179.7°
C1'	N1	C2	O2	3.3°	0.2°
C1'	N1	C6	C5	177.0°	180.0°
C1'	N1	C6	H6	3.0°	0.0°
N1	C1'	O4'	C4'	122.6°	158.7°
N1	C1'	O4'	C2'	125.7°	118.7°
N1	C1'	O4'	H1'	117.0°	122.8°
N1	C1'	C2'	C3'	101.2°	155.6°
N1	C1'	C2'	O2'	139.9°	86.2°
N1	C1'	C2'	H1'	116.6°	123.1°
N1	C1'	C2'	H2'	20.4°	37.4°
C2	N3	C4	HN3	179.9°	179.7°
C2	N3	C4	C5	2.9°	0.3°
C2	N3	C4	O4	177.2°	179.7°
O2	C2	N3	C4	178.9°	180.0°
O2	C2	N3	HN3	1.0°	0.3°
N3	C4	C5	O4	179.9°	179.9°
N3	C4	C5	C6	1.5°	0.1°
N3	C4	C5	H5	178.5°	179.9°
HN3	N3	C4	C5	177.1°	180.0°
HN3	N3	C4	O4	2.7°	0.0°
C4	C5	C6	H5	179.9°	180.0°
C4	C5	C6	H6	179.6°	180.0°
O4	C4	C5	C6	178.6°	180.0°
O4	C4	C5	H5	1.3°	0.0°
H5	C5	C6	H6	0.5°	0.0°
O1P	P	O2P	O3P	128.9°	120.0°
O1P	P	O2P	O3'	116.3°	120.1°
O1P	P	O3P	O3'	116.3°	120.0°
O1P	P	O3P	HOP3	180.0°	60.0°
O1P	P	O3'	C3'	42.2°	180.0°
O2P	P	O3P	O3'	117.6°	120.0°
O2P	P	O1P	HOP1	180.0°	60.0°
O2P	P	O3P	HOP3	53.8°	180.0°
O2P	P	O3'	C3'	75.3°	60.0°
O3P	P	O1P	HOP1	51.3°	60.0°
O3P	P	O3'	C3'	163.4°	60.0°
O3'	P	O1P	HOP1	62.9°	179.9°
O3'	P	O3P	HOP3	63.8°	60.1°
P	O3'	C3'	C4'	177.9°	125.2°
P	O3'	C3'	C2'	63.4°	120.1°
P	O3'	C3'	H3'	58.7°	2.5°
O5'	C5'	C4'	H5'1	125.2°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.1°
O5'	C5'	H5'1	H5'2	116.6°	120.0°
O5'	C5'	C4'	O4'	57.6°	61.6°
O5'	C5'	C4'	C3'	174.7°	179.7°
O5'	C5'	C4'	H4'	64.3°	59.3°
HO5'	O5'	C5'	C4'	180.0°	180.0°
HO5'	O5'	C5'	H5'1	54.7°	60.0°
HO5'	O5'	C5'	H5'2	54.7°	60.0°
C4'	C5'	H5'1	H5'2	116.6°	119.9°
C5'	C4'	O4'	C3'	122.1°	119.6°
C5'	C4'	O4'	H4'	116.9°	120.9°
C5'	C4'	C3'	H4'	116.9°	121.0°
C5'	C4'	O4'	C1'	138.8°	146.0°
C5'	C4'	C3'	O3'	90.2°	119.8°
C5'	C4'	C3'	C2'	150.7°	121.4°
C5'	C4'	C3'	H3'	29.0°	2.8°
H5'1	C5'	C4'	O4'	67.6°	58.4°
H5'1	C5'	C4'	C3'	49.5°	59.7°
H5'1	C5'	C4'	H4'	170.5°	179.3°
H5'2	C5'	C4'	O4'	177.1°	178.3°
H5'2	C5'	C4'	C3'	59.9°	60.3°
H5'2	C5'	C4'	H4'	61.0°	60.8°
O4'	C4'	C3'	H4'	121.9°	119.5°
O4'	C4'	C3'	O3'	148.6°	120.7°
O4'	C4'	C3'	C2'	29.5°	1.9°
O4'	C4'	C3'	H3'	92.2°	116.7°
C4'	O4'	C1'	C2'	3.1°	40.0°
C4'	O4'	C1'	H1'	120.4°	78.5°
C3'	C4'	O4'	C1'	16.7°	26.4°
C4'	C3'	O3'	C2'	114.5°	114.7°
C4'	C3'	O3'	H3'	123.4°	122.7°
C4'	C3'	C2'	H3'	123.2°	118.5°
C4'	C3'	C2'	O2'	84.2°	139.3°
C4'	C3'	C2'	C1'	30.6°	21.0°
C4'	C3'	C2'	H2'	155.9°	97.2°
H4'	C4'	O4'	C1'	104.3°	93.1°
H4'	C4'	C3'	O3'	26.7°	1.2°
H4'	C4'	C3'	C2'	92.4°	117.6°
H4'	C4'	C3'	H3'	145.9°	123.8°
O4'	C1'	C2'	C3'	21.3°	37.1°
O4'	C1'	C2'	O2'	97.7°	155.3°
O4'	C1'	C2'	H1'	120.9°	118.4°
O4'	C1'	C2'	H2'	142.9°	81.2°
O3'	C3'	C2'	H3'	119.4°	122.5°
O3'	C3'	C2'	O2'	33.3°	20.3°
O3'	C3'	C2'	C1'	148.0°	97.9°
O3'	C3'	C2'	H2'	86.7°	143.8°
C3'	C2'	O2'	C1'	111.8°	112.8°
C3'	C2'	O2'	H2'	122.5°	123.6°
C3'	C2'	C1'	H2'	121.6°	118.2°
C3'	C2'	O2'	HO2'	180.0°	174.2°
C3'	C2'	C1'	H1'	142.2°	81.3°
H3'	C3'	C2'	O2'	152.6°	102.2°
H3'	C3'	C2'	C1'	92.6°	139.5°
H3'	C3'	C2'	H2'	32.7°	21.3°
O2'	C2'	C1'	H2'	119.4°	123.6°
O2'	C2'	C1'	H1'	23.2°	36.9°
C1'	C2'	O2'	HO2'	68.2°	61.4°
H2'	C2'	O2'	HO2'	57.5°	62.3°
H2'	C2'	C1'	H1'	96.2°	160.5°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	4RSK