U36
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.47Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | CA' | sing | 1.43Å | 1.44Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.37Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.43Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CA' | CB' | sing | 1.53Å | 1.53Å | |
| CA' | HA'1 | sing | 1.09Å | 1.10Å | |
| CA' | HA'2 | sing | 1.09Å | 1.10Å | |
| CB' | OC' | sing | 1.43Å | 1.47Å | |
| CB' | HB'1 | sing | 1.09Å | 1.10Å | |
| CB' | HB'2 | sing | 1.09Å | 1.10Å | |
| CD' | OC' | sing | 1.43Å | 1.45Å | |
| CD' | HD'1 | sing | 1.09Å | 1.10Å | |
| CD' | HD'2 | sing | 1.09Å | 1.10Å | |
| CD' | HD'3 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 120.2° | 109.5° |
| OP1 | P | OP3 | 106.4° | 109.4° |
| OP1 | P | O5' | 109.6° | 109.5° |
| OP2 | P | OP3 | 109.4° | 109.5° |
| OP2 | P | O5' | 105.8° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP3 | P | O5' | 104.3° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 113.9° |
| P | O5' | C5' | 121.1° | 123.0° |
| O5' | C5' | C4' | 109.6° | 109.5° |
| O5' | C5' | H5'1 | 109.5° | 109.5° |
| O5' | C5' | H5'2 | 109.4° | 109.5° |
| C4' | C5' | H5'1 | 109.4° | 109.5° |
| C4' | C5' | H5'2 | 109.4° | 109.5° |
| C5' | C4' | O4' | 109.6° | 109.9° |
| C5' | C4' | C3' | 115.9° | 109.9° |
| C5' | C4' | H4' | 109.4° | 109.9° |
| H5'1 | C5' | H5'2 | 109.5° | 109.4° |
| O4' | C4' | C3' | 102.4° | 107.3° |
| O4' | C4' | H4' | 110.1° | 109.9° |
| C4' | O4' | C1' | 109.6° | 107.0° |
| C3' | C4' | H4' | 109.2° | 110.0° |
| C4' | C3' | O3' | 111.7° | 110.5° |
| C4' | C3' | C2' | 101.5° | 104.2° |
| C4' | C3' | H3' | 109.5° | 110.5° |
| O4' | C1' | C2' | 107.2° | 103.5° |
| O4' | C1' | N1 | 108.7° | 110.6° |
| O4' | C1' | H1' | 110.7° | 110.6° |
| O3' | C3' | C2' | 113.4° | 110.5° |
| O3' | C3' | H3' | 110.9° | 110.5° |
| C3' | O3' | HA | 109.5° | 114.0° |
| C2' | C3' | H3' | 109.4° | 110.6° |
| C3' | C2' | O2' | 111.2° | 110.9° |
| C3' | C2' | C1' | 101.1° | 102.1° |
| C3' | C2' | H2' | 111.0° | 110.9° |
| O2' | C2' | C1' | 109.0° | 110.9° |
| O2' | C2' | H2' | 112.7° | 110.8° |
| C2' | O2' | CA' | 112.4° | 114.0° |
| C1' | C2' | H2' | 111.1° | 111.0° |
| C2' | C1' | N1 | 111.0° | 110.6° |
| C2' | C1' | H1' | 109.2° | 110.6° |
| O2' | CA' | CB' | 115.7° | 109.5° |
| O2' | CA' | HA'1 | 107.9° | 109.4° |
| O2' | CA' | HA'2 | 107.9° | 109.5° |
| N1 | C1' | H1' | 110.0° | 110.7° |
| C1' | N1 | C2 | 117.5° | 119.7° |
| C1' | N1 | C6 | 121.3° | 119.7° |
| C2 | N1 | C6 | 121.2° | 120.6° |
| N1 | C2 | O2 | 122.8° | 119.5° |
| N1 | C2 | N3 | 115.0° | 120.9° |
| N1 | C6 | C5 | 122.7° | 119.7° |
| N1 | C6 | H6 | 118.6° | 120.2° |
| O2 | C2 | N3 | 122.1° | 119.6° |
| C2 | N3 | C4 | 127.1° | 120.3° |
| C2 | N3 | H3 | 116.5° | 119.9° |
| C4 | N3 | H3 | 116.5° | 119.9° |
| N3 | C4 | O4 | 119.1° | 120.3° |
| N3 | C4 | C5 | 114.5° | 119.4° |
| O4 | C4 | C5 | 126.3° | 120.3° |
| C4 | C5 | C6 | 119.4° | 119.1° |
| C4 | C5 | H5 | 120.3° | 120.4° |
| C6 | C5 | H5 | 120.3° | 120.5° |
| C5 | C6 | H6 | 118.6° | 120.1° |
| CB' | CA' | HA'1 | 107.9° | 109.4° |
| CB' | CA' | HA'2 | 107.9° | 109.5° |
| CA' | CB' | OC' | 117.3° | 109.5° |
| CA' | CB' | HB'1 | 107.5° | 109.5° |
| CA' | CB' | HB'2 | 107.5° | 109.5° |
| HA'1 | CA' | HA'2 | 109.5° | 109.5° |
| OC' | CB' | HB'1 | 107.5° | 109.4° |
| OC' | CB' | HB'2 | 107.5° | 109.5° |
| CB' | OC' | CD' | 110.6° | 114.0° |
| HB'1 | CB' | HB'2 | 109.4° | 109.5° |
| OC' | CD' | HD'1 | 109.5° | 109.5° |
| OC' | CD' | HD'2 | 109.4° | 109.5° |
| OC' | CD' | HD'3 | 109.5° | 109.5° |
| HD'1 | CD' | HD'2 | 109.5° | 109.5° |
| HD'1 | CD' | HD'3 | 109.4° | 109.4° |
| HD'2 | CD' | HD'3 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 123.5° | 119.9° |
| OP1 | P | OP2 | O5' | 124.7° | 120.0° |
| OP1 | P | OP3 | O5' | 115.8° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 59.9° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 58.5° | 55.0° |
| OP2 | P | OP3 | O5' | 112.9° | 120.1° |
| OP2 | P | OP3 | HOP3 | 131.3° | 60.1° |
| OP2 | P | O5' | C5' | 170.4° | 175.0° |
| OP3 | P | OP2 | HOP2 | 123.5° | 60.0° |
| OP3 | P | O5' | C5' | 55.1° | 65.0° |
| O5' | P | OP2 | HOP2 | 124.6° | 179.9° |
| O5' | P | OP3 | HOP3 | 115.8° | 60.0° |
| P | O5' | C5' | C4' | 163.1° | 180.0° |
| P | O5' | C5' | H5'1 | 76.9° | 60.0° |
| P | O5' | C5' | H5'2 | 43.1° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.0° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.9° | 120.1° |
| O5' | C5' | C4' | O4' | 64.0° | 66.5° |
| O5' | C5' | C4' | C3' | 51.2° | 175.7° |
| O5' | C5' | C4' | H4' | 175.2° | 54.5° |
| C4' | C5' | H5'1 | H5'2 | 119.9° | 120.0° |
| C5' | C4' | O4' | C3' | 123.5° | 119.4° |
| C5' | C4' | O4' | H4' | 120.4° | 121.0° |
| C5' | C4' | C3' | H4' | 124.1° | 121.1° |
| C5' | C4' | O4' | C1' | 152.4° | 145.9° |
| C5' | C4' | C3' | O3' | 78.0° | 119.9° |
| C5' | C4' | C3' | C2' | 160.8° | 121.4° |
| C5' | C4' | C3' | H3' | 45.2° | 2.6° |
| H5'1 | C5' | C4' | O4' | 176.0° | 53.6° |
| H5'1 | C5' | C4' | C3' | 68.8° | 64.3° |
| H5'1 | C5' | C4' | H4' | 55.2° | 174.6° |
| H5'2 | C5' | C4' | O4' | 56.0° | 173.5° |
| H5'2 | C5' | C4' | C3' | 171.2° | 55.7° |
| H5'2 | C5' | C4' | H4' | 64.8° | 65.5° |
| O4' | C4' | C3' | H4' | 116.7° | 119.5° |
| O4' | C4' | C3' | O3' | 162.7° | 120.7° |
| O4' | C4' | C3' | C2' | 41.6° | 2.0° |
| O4' | C4' | C3' | H3' | 74.0° | 116.8° |
| C4' | O4' | C1' | C2' | 4.1° | 40.1° |
| C4' | O4' | C1' | N1 | 124.2° | 158.6° |
| C4' | O4' | C1' | H1' | 114.9° | 78.4° |
| C3' | C4' | O4' | C1' | 28.8° | 26.5° |
| C4' | C3' | O3' | C2' | 114.0° | 114.7° |
| C4' | C3' | O3' | H3' | 122.5° | 122.5° |
| C4' | C3' | C2' | H3' | 115.7° | 118.7° |
| C4' | C3' | O3' | HA | 180.0° | 61.4° |
| C4' | C3' | C2' | O2' | 77.2° | 139.1° |
| C4' | C3' | C2' | C1' | 38.4° | 20.9° |
| C4' | C3' | C2' | H2' | 156.4° | 97.4° |
| H4' | C4' | O4' | C1' | 87.2° | 93.1° |
| H4' | C4' | C3' | O3' | 46.0° | 1.2° |
| H4' | C4' | C3' | C2' | 75.2° | 117.5° |
| H4' | C4' | C3' | H3' | 169.3° | 123.7° |
| O4' | C1' | C2' | C3' | 22.1° | 37.1° |
| O4' | C1' | C2' | O2' | 95.2° | 155.2° |
| O4' | C1' | C2' | N1 | 118.6° | 118.5° |
| O4' | C1' | C2' | H1' | 119.9° | 118.5° |
| O4' | C1' | C2' | H2' | 140.0° | 81.2° |
| O4' | C1' | N1 | H1' | 121.3° | 123.0° |
| O4' | C1' | N1 | C2 | 160.5° | 126.4° |
| O4' | C1' | N1 | C6 | 20.4° | 53.3° |
| O3' | C3' | C2' | H3' | 124.4° | 122.7° |
| O3' | C3' | C2' | O2' | 42.8° | 20.4° |
| O3' | C3' | C2' | C1' | 158.4° | 97.8° |
| O3' | C3' | C2' | H2' | 83.6° | 143.9° |
| C2' | C3' | O3' | HA | 66.0° | 176.2° |
| C3' | C2' | O2' | C1' | 110.7° | 112.7° |
| C3' | C2' | O2' | H2' | 125.5° | 123.6° |
| C3' | C2' | C1' | H2' | 117.9° | 118.3° |
| C3' | C2' | O2' | CA' | 172.4° | 91.4° |
| C3' | C2' | C1' | N1 | 96.6° | 155.6° |
| C3' | C2' | C1' | H1' | 142.0° | 81.4° |
| H3' | C3' | O3' | HA | 57.5° | 61.1° |
| H3' | C3' | C2' | O2' | 167.1° | 102.2° |
| H3' | C3' | C2' | C1' | 77.2° | 139.6° |
| H3' | C3' | C2' | H2' | 40.7° | 21.3° |
| O2' | C2' | C1' | H2' | 124.8° | 123.6° |
| O2' | C2' | C1' | N1 | 146.2° | 86.3° |
| O2' | C2' | C1' | H1' | 24.8° | 36.7° |
| C2' | O2' | CA' | CB' | 126.6° | 180.0° |
| C2' | O2' | CA' | HA'1 | 5.7° | 60.0° |
| C2' | O2' | CA' | HA'2 | 112.5° | 60.0° |
| C1' | C2' | O2' | CA' | 61.8° | 155.9° |
| C2' | C1' | N1 | H1' | 120.9° | 123.0° |
| C2' | C1' | N1 | C2 | 81.7° | 119.5° |
| C2' | C1' | N1 | C6 | 97.4° | 60.8° |
| H2' | C2' | O2' | CA' | 62.1° | 32.2° |
| H2' | C2' | C1' | N1 | 21.4° | 37.3° |
| H2' | C2' | C1' | H1' | 100.1° | 160.3° |
| O2' | CA' | CB' | HA'1 | 120.9° | 120.0° |
| O2' | CA' | CB' | HA'2 | 120.9° | 120.1° |
| O2' | CA' | HA'1 | HA'2 | 117.2° | 120.1° |
| O2' | CA' | CB' | OC' | 66.9° | 65.0° |
| O2' | CA' | CB' | HB'1 | 171.9° | 175.1° |
| O2' | CA' | CB' | HB'2 | 54.2° | 55.0° |
| C1' | N1 | C2 | C6 | 179.1° | 179.7° |
| C1' | N1 | C2 | O2 | 0.7° | 0.0° |
| C1' | N1 | C2 | N3 | 178.6° | 180.0° |
| C1' | N1 | C6 | C5 | 178.3° | 179.7° |
| C1' | N1 | C6 | H6 | 1.7° | 0.0° |
| H1' | C1' | N1 | C2 | 39.2° | 3.5° |
| H1' | C1' | N1 | C6 | 141.7° | 176.3° |
| N1 | C2 | O2 | N3 | 179.3° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| N1 | C2 | N3 | H3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.8° | 0.6° |
| C2 | N1 | C6 | H6 | 179.2° | 179.7° |
| C6 | N1 | C2 | O2 | 179.8° | 179.7° |
| C6 | N1 | C2 | N3 | 0.5° | 0.3° |
| N1 | C6 | C5 | C4 | 0.6° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.4° | 179.8° |
| O2 | C2 | N3 | C4 | 179.4° | 180.0° |
| O2 | C2 | N3 | H3 | 0.6° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.1° | 179.9° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| N3 | C4 | O4 | C5 | 179.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.3° |
| N3 | C4 | C5 | H5 | 179.8° | 180.0° |
| H3 | N3 | C4 | O4 | 0.9° | 0.0° |
| H3 | N3 | C4 | C5 | 179.9° | 180.0° |
| O4 | C4 | C5 | C6 | 178.8° | 179.7° |
| O4 | C4 | C5 | H5 | 1.2° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 179.4° | 179.7° |
| H5 | C5 | C6 | H6 | 0.6° | 0.0° |
| CB' | CA' | HA'1 | HA'2 | 117.1° | 120.0° |
| CA' | CB' | OC' | HB'1 | 121.1° | 120.0° |
| CA' | CB' | OC' | HB'2 | 121.2° | 120.0° |
| CA' | CB' | HB'1 | HB'2 | 116.4° | 120.0° |
| CA' | CB' | OC' | CD' | 121.2° | 180.0° |
| HA'1 | CA' | CB' | OC' | 54.0° | 55.0° |
| HA'1 | CA' | CB' | HB'1 | 67.2° | 65.0° |
| HA'1 | CA' | CB' | HB'2 | 175.1° | 175.0° |
| HA'2 | CA' | CB' | OC' | 172.2° | 174.9° |
| HA'2 | CA' | CB' | HB'1 | 51.0° | 55.0° |
| HA'2 | CA' | CB' | HB'2 | 66.7° | 65.0° |
| OC' | CB' | HB'1 | HB'2 | 116.4° | 120.0° |
| CB' | OC' | CD' | HD'1 | 180.0° | 180.0° |
| CB' | OC' | CD' | HD'2 | 60.0° | 60.1° |
| CB' | OC' | CD' | HD'3 | 60.0° | 60.0° |
| HB'1 | CB' | OC' | CD' | 0.1° | 60.1° |
| HB'2 | CB' | OC' | CD' | 117.6° | 60.0° |
| OC' | CD' | HD'1 | HD'2 | 120.0° | 120.0° |
| OC' | CD' | HD'1 | HD'3 | 120.0° | 120.0° |
| OC' | CD' | HD'2 | HD'3 | 120.0° | 120.0° |
| HD'1 | CD' | HD'2 | HD'3 | 120.0° | 120.0° |
