U34
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OXT | C | sing | 1.43Å | 27.92Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| O3P | P | sing | 1.62Å | 1.50Å | |
| O3P | H3P | sing | 0.98Å | 0.95Å | |
| P | O1P | doub | 1.50Å | 1.46Å | |
| P | O2P | sing | 1.62Å | 1.60Å | |
| P | C | sing | 1.79Å | 1.75Å | |
| O2P | H2P | sing | 0.98Å | 0.95Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | C | sing | 1.52Å | 1.49Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.10Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.52Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.51Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.41Å | 1.42Å | |
| C2' | C1' | sing | 1.52Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| O2' | HB | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.43Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.41Å | 1.39Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| C2 | O2 | doub | 1.23Å | 1.23Å | |
| C2 | N3 | sing | 1.40Å | 1.37Å | |
| N3 | C4 | sing | 1.39Å | 1.38Å | |
| N3 | H3 | sing | 1.02Å | 1.02Å | |
| C4 | O4 | doub | 1.23Å | 1.22Å | |
| C4 | C5 | sing | 1.48Å | 1.45Å | |
| C5 | C6 | doub | 1.33Å | 1.36Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C | H | sing | 1.10Å | 1.12Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C | OXT | HXT | 88.2° | 107.3° |
| OXT | C | P | 88.2° | 104.5° |
| OXT | C | C5' | 144.9° | 107.1° |
| OXT | C | H | 50.5° | 107.7° |
| P | O3P | H3P | 118.0° | 118.9° |
| O3P | P | O1P | 118.0° | 115.0° |
| O3P | P | O2P | 108.5° | 102.7° |
| O3P | P | C | 108.0° | 103.6° |
| O1P | P | O2P | 106.9° | 115.1° |
| O1P | P | C | 107.5° | 115.0° |
| O2P | P | C | 107.6° | 103.9° |
| P | O2P | H2P | 108.4° | 118.9° |
| P | C | C5' | 126.2° | 115.9° |
| P | C | H | 106.3° | 110.6° |
| C4' | C5' | C | 117.1° | 113.1° |
| C4' | C5' | H5'1 | 109.5° | 109.1° |
| C4' | C5' | H5'2 | 109.5° | 108.9° |
| C5' | C4' | O4' | 110.8° | 108.2° |
| C5' | C4' | C3' | 111.1° | 113.3° |
| C5' | C4' | H4' | 109.0° | 109.3° |
| C | C5' | H5'1 | 109.4° | 110.1° |
| C | C5' | H5'2 | 109.5° | 109.3° |
| C5' | C | H | 106.3° | 110.4° |
| H5'1 | C5' | H5'2 | 100.6° | 106.1° |
| O4' | C4' | C3' | 108.0° | 105.9° |
| O4' | C4' | H4' | 108.9° | 107.7° |
| C4' | O4' | C1' | 107.9° | 109.2° |
| C3' | C4' | H4' | 109.0° | 112.2° |
| C4' | C3' | O3' | 110.3° | 107.9° |
| C4' | C3' | C2' | 104.9° | 102.1° |
| C4' | C3' | H3' | 110.1° | 114.5° |
| O4' | C1' | C2' | 106.4° | 106.5° |
| O4' | C1' | N1 | 110.1° | 109.0° |
| O4' | C1' | H1' | 108.9° | 108.9° |
| O3' | C3' | C2' | 111.3° | 110.3° |
| O3' | C3' | H3' | 110.0° | 107.8° |
| C3' | O3' | HA | 110.3° | 106.4° |
| C2' | C3' | H3' | 110.1° | 114.0° |
| C3' | C2' | O2' | 111.1° | 112.3° |
| C3' | C2' | C1' | 103.6° | 102.0° |
| C3' | C2' | H2' | 109.9° | 110.1° |
| O2' | C2' | C1' | 112.3° | 112.6° |
| O2' | C2' | H2' | 109.9° | 108.6° |
| C2' | O2' | HB | 111.1° | 107.1° |
| C1' | C2' | H2' | 109.9° | 111.1° |
| C2' | C1' | N1 | 113.6° | 112.5° |
| C2' | C1' | H1' | 108.8° | 112.6° |
| N1 | C1' | H1' | 108.9° | 107.3° |
| C1' | N1 | C2 | 117.1° | 121.3° |
| C1' | N1 | C6 | 121.0° | 118.6° |
| C2 | N1 | C6 | 121.7° | 120.1° |
| N1 | C2 | O2 | 122.4° | 123.7° |
| N1 | C2 | N3 | 116.3° | 115.2° |
| N1 | C6 | C5 | 121.0° | 124.1° |
| N1 | C6 | H6 | 119.5° | 115.5° |
| O2 | C2 | N3 | 121.3° | 121.1° |
| C2 | N3 | C4 | 126.0° | 126.8° |
| C2 | N3 | H3 | 117.0° | 116.6° |
| C4 | N3 | H3 | 117.0° | 116.6° |
| N3 | C4 | O4 | 120.0° | 124.5° |
| N3 | C4 | C5 | 114.4° | 114.6° |
| O4 | C4 | C5 | 125.5° | 120.9° |
| C4 | C5 | C6 | 120.6° | 119.3° |
| C4 | C5 | H5 | 119.7° | 118.8° |
| C6 | C5 | H5 | 119.7° | 121.9° |
| C5 | C6 | H6 | 119.5° | 120.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OXT | C | P | O3P | 16.6° | 51.4° |
| OXT | C | P | O1P | 144.9° | 177.7° |
| OXT | C | P | O2P | 100.3° | 55.6° |
| OXT | C | P | C5' | 173.1° | 117.7° |
| OXT | C | P | H | 47.8° | 115.7° |
| OXT | C | C5' | C4' | 3.9° | 177.0° |
| OXT | C | C5' | H | 42.6° | 117.0° |
| OXT | C | C5' | H5'1 | 129.2° | 60.7° |
| OXT | C | C5' | H5'2 | 121.3° | 55.5° |
| HXT | OXT | C | P | 180.0° | 59.4° |
| HXT | OXT | C | C5' | 9.7° | 177.1° |
| HXT | OXT | C | H | 67.0° | 58.3° |
| O3P | P | O1P | O2P | 122.4° | 119.0° |
| O3P | P | O1P | C | 122.3° | 120.2° |
| O3P | P | O2P | C | 116.5° | 107.7° |
| O3P | P | O2P | H2P | 180.0° | 74.5° |
| O3P | P | C | C5' | 170.4° | 66.3° |
| O3P | P | C | H | 64.3° | 167.1° |
| H3P | O3P | P | O1P | 180.0° | 51.3° |
| H3P | O3P | P | O2P | 58.3° | 74.4° |
| H3P | O3P | P | C | 58.0° | 177.6° |
| O1P | P | O2P | C | 115.3° | 126.7° |
| O1P | P | O2P | H2P | 51.8° | 51.1° |
| O1P | P | C | C5' | 42.1° | 60.0° |
| O1P | P | C | H | 167.4° | 66.6° |
| O2P | P | C | C5' | 72.8° | 173.3° |
| O2P | P | C | H | 52.5° | 60.1° |
| C | P | O2P | H2P | 63.5° | 177.8° |
| P | C | C5' | C4' | 171.8° | 66.8° |
| P | C | C5' | H | 125.3° | 126.7° |
| P | C | C5' | H5'1 | 62.9° | 55.6° |
| P | C | C5' | H5'2 | 46.5° | 171.7° |
| C4' | C5' | C | H5'1 | 125.3° | 122.3° |
| C4' | C5' | C | H5'2 | 125.3° | 121.5° |
| C4' | C5' | H5'1 | H5'2 | 115.2° | 117.2° |
| C5' | C4' | O4' | C3' | 121.8° | 121.7° |
| C5' | C4' | O4' | H4' | 119.9° | 118.1° |
| C5' | C4' | C3' | H4' | 120.1° | 124.4° |
| C5' | C4' | O4' | C1' | 139.4° | 109.0° |
| C5' | C4' | C3' | O3' | 119.8° | 156.8° |
| C5' | C4' | C3' | C2' | 120.2° | 86.9° |
| C5' | C4' | C3' | H3' | 1.8° | 36.8° |
| C4' | C5' | C | H | 46.5° | 60.0° |
| C | C5' | H5'1 | H5'2 | 115.2° | 118.2° |
| C | C5' | C4' | O4' | 161.0° | 60.1° |
| C | C5' | C4' | C3' | 79.0° | 177.1° |
| C | C5' | C4' | H4' | 41.1° | 56.9° |
| H5'1 | C5' | C4' | O4' | 73.8° | 177.1° |
| H5'1 | C5' | C4' | C3' | 46.2° | 60.0° |
| H5'1 | C5' | C4' | H4' | 166.3° | 66.0° |
| H5'1 | C5' | C | H | 171.8° | 177.7° |
| H5'2 | C5' | C4' | O4' | 35.7° | 61.7° |
| H5'2 | C5' | C4' | C3' | 155.7° | 55.4° |
| H5'2 | C5' | C4' | H4' | 84.2° | 178.7° |
| H5'2 | C5' | C | H | 78.8° | 61.5° |
| O4' | C4' | C3' | H4' | 118.2° | 117.2° |
| O4' | C4' | C3' | O3' | 118.5° | 84.7° |
| O4' | C4' | C3' | C2' | 1.5° | 31.5° |
| O4' | C4' | C3' | H3' | 119.9° | 155.2° |
| C4' | O4' | C1' | C2' | 29.9° | 11.3° |
| C4' | O4' | C1' | N1 | 153.4° | 132.9° |
| C4' | O4' | C1' | H1' | 87.3° | 110.3° |
| C3' | C4' | O4' | C1' | 17.6° | 12.8° |
| C4' | C3' | O3' | C2' | 116.0° | 110.7° |
| C4' | C3' | O3' | H3' | 121.7° | 124.2° |
| C4' | C3' | C2' | H3' | 118.4° | 124.0° |
| C4' | C3' | O3' | HA | 180.0° | 15.2° |
| C4' | C3' | C2' | O2' | 139.4° | 158.0° |
| C4' | C3' | C2' | C1' | 18.6° | 37.1° |
| C4' | C3' | C2' | H2' | 98.8° | 80.9° |
| H4' | C4' | O4' | C1' | 100.7° | 133.0° |
| H4' | C4' | C3' | O3' | 0.3° | 32.5° |
| H4' | C4' | C3' | C2' | 119.7° | 148.7° |
| H4' | C4' | C3' | H3' | 121.9° | 87.6° |
| O4' | C1' | C2' | C3' | 29.9° | 30.7° |
| O4' | C1' | C2' | O2' | 149.8° | 151.3° |
| O4' | C1' | C2' | N1 | 121.3° | 119.3° |
| O4' | C1' | C2' | H1' | 117.2° | 119.3° |
| O4' | C1' | C2' | H2' | 87.5° | 86.6° |
| O4' | C1' | N1 | H1' | 119.3° | 117.7° |
| O4' | C1' | N1 | C2 | 109.0° | 147.8° |
| O4' | C1' | N1 | C6 | 65.3° | 32.3° |
| O3' | C3' | C2' | H3' | 122.3° | 121.5° |
| O3' | C3' | C2' | O2' | 20.0° | 43.5° |
| O3' | C3' | C2' | C1' | 100.7° | 77.4° |
| O3' | C3' | C2' | H2' | 141.9° | 164.6° |
| C2' | C3' | O3' | HA | 64.0° | 95.6° |
| C3' | C2' | O2' | C1' | 115.5° | 114.5° |
| C3' | C2' | O2' | H2' | 121.9° | 122.0° |
| C3' | C2' | C1' | H2' | 117.4° | 117.3° |
| C3' | C2' | O2' | HB | 180.0° | 168.8° |
| C3' | C2' | C1' | N1 | 151.2° | 150.0° |
| C3' | C2' | C1' | H1' | 87.3° | 88.5° |
| H3' | C3' | O3' | HA | 58.3° | 139.4° |
| H3' | C3' | C2' | O2' | 102.3° | 78.0° |
| H3' | C3' | C2' | C1' | 137.0° | 161.1° |
| H3' | C3' | C2' | H2' | 19.6° | 43.1° |
| O2' | C2' | C1' | H2' | 122.7° | 122.1° |
| O2' | C2' | C1' | N1 | 88.9° | 89.4° |
| O2' | C2' | C1' | H1' | 32.6° | 32.1° |
| C1' | C2' | O2' | HB | 64.5° | 54.3° |
| C2' | C1' | N1 | H1' | 121.5° | 124.4° |
| C2' | C1' | N1 | C2 | 131.8° | 94.3° |
| C2' | C1' | N1 | C6 | 54.0° | 85.6° |
| H2' | C2' | O2' | HB | 58.1° | 69.2° |
| H2' | C2' | C1' | N1 | 33.8° | 32.7° |
| H2' | C2' | C1' | H1' | 155.3° | 154.2° |
| C1' | N1 | C2 | C6 | 174.2° | 180.0° |
| C1' | N1 | C2 | O2 | 8.3° | 0.1° |
| C1' | N1 | C2 | N3 | 173.1° | 180.0° |
| C1' | N1 | C6 | C5 | 173.1° | 180.0° |
| C1' | N1 | C6 | H6 | 6.9° | 0.0° |
| H1' | C1' | N1 | C2 | 10.3° | 30.0° |
| H1' | C1' | N1 | C6 | 175.4° | 150.0° |
| N1 | C2 | O2 | N3 | 178.5° | 179.9° |
| N1 | C2 | N3 | C4 | 0.4° | 0.0° |
| N1 | C2 | N3 | H3 | 179.6° | 180.0° |
| C2 | N1 | C6 | C5 | 0.9° | 0.0° |
| C2 | N1 | C6 | H6 | 179.1° | 180.0° |
| C6 | N1 | C2 | O2 | 177.5° | 180.0° |
| C6 | N1 | C2 | N3 | 1.1° | 0.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 180.0° | 180.0° |
| O2 | C2 | N3 | C4 | 178.2° | 180.0° |
| O2 | C2 | N3 | H3 | 1.8° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 176.3° | 180.0° |
| C2 | N3 | C4 | C5 | 0.4° | 0.0° |
| N3 | C4 | O4 | C5 | 176.3° | 180.0° |
| N3 | C4 | C5 | C6 | 0.6° | 0.0° |
| N3 | C4 | C5 | H5 | 179.4° | 180.0° |
| H3 | N3 | C4 | O4 | 3.7° | 0.0° |
| H3 | N3 | C4 | C5 | 179.6° | 180.0° |
| O4 | C4 | C5 | C6 | 175.9° | 180.0° |
| O4 | C4 | C5 | H5 | 4.1° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 180.0° | 180.0° |
| H5 | C5 | C6 | H6 | 0.0° | 0.0° |
