U31
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | sing | 1.61Å | 1.46Å | |
| P | O2P | doub | 1.48Å | 1.46Å | |
| P | O3P | sing | 1.61Å | 1.67Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| O1P | H1P | sing | 0.97Å | 0.95Å | |
| O3P | H3P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.45Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.47Å | |
| C3' | C2' | sing | 1.55Å | 1.56Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C1' | sing | 1.55Å | 1.57Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | CA' | sing | 1.43Å | 1.51Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.34Å | 1.37Å | |
| N1 | C6 | sing | 1.37Å | 1.32Å | |
| C2 | O2 | doub | 1.22Å | 1.16Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| N3 | C4 | sing | 1.35Å | 1.33Å | |
| N3 | H3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.24Å | |
| C4 | C5 | sing | 1.41Å | 1.36Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| CA' | CB' | sing | 1.53Å | 1.45Å | |
| CA' | HA'1 | sing | 1.09Å | 1.12Å | |
| CA' | HA'2 | sing | 1.09Å | 1.12Å | |
| CB' | CC | sing | 1.53Å | 1.41Å | |
| CB' | HB'1 | sing | 1.09Å | 1.12Å | |
| CB' | HB'2 | sing | 1.09Å | 1.11Å | |
| CC | ND' | sing | 1.47Å | 1.41Å | |
| CC | HCC1 | sing | 1.09Å | 1.11Å | |
| CC | HCC2 | sing | 1.09Å | 1.12Å | |
| ND' | HD'1 | sing | 1.01Å | 1.02Å | |
| ND' | HD'2 | sing | 1.01Å | 1.02Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 118.8° | 109.5° |
| O1P | P | O3P | 103.8° | 109.4° |
| O1P | P | O5' | 100.1° | 109.5° |
| P | O1P | H1P | 118.8° | 106.8° |
| O2P | P | O3P | 110.9° | 109.4° |
| O2P | P | O5' | 105.5° | 109.5° |
| O3P | P | O5' | 117.9° | 109.5° |
| P | O3P | H3P | 103.8° | 106.8° |
| P | O5' | C5' | 110.5° | 106.8° |
| O5' | C5' | C4' | 115.2° | 109.5° |
| O5' | C5' | H5'1 | 110.1° | 109.5° |
| O5' | C5' | H5'2 | 110.1° | 109.5° |
| C4' | C5' | H5'1 | 110.2° | 109.4° |
| C4' | C5' | H5'2 | 110.1° | 109.5° |
| C5' | C4' | O4' | 106.5° | 110.0° |
| C5' | C4' | C3' | 108.2° | 109.9° |
| C5' | C4' | H4' | 112.6° | 109.9° |
| H5'1 | C5' | H5'2 | 100.1° | 109.5° |
| O4' | C4' | C3' | 103.7° | 107.2° |
| O4' | C4' | H4' | 112.6° | 109.9° |
| C4' | O4' | C1' | 112.3° | 107.0° |
| C3' | C4' | H4' | 112.6° | 109.9° |
| C4' | C3' | O3' | 102.3° | 110.5° |
| C4' | C3' | C2' | 100.0° | 104.2° |
| C4' | C3' | H3' | 114.1° | 110.5° |
| O4' | C1' | C2' | 102.3° | 103.5° |
| O4' | C1' | N1 | 103.6° | 110.6° |
| O4' | C1' | H1' | 106.3° | 110.6° |
| O3' | C3' | C2' | 111.0° | 110.5° |
| O3' | C3' | H3' | 114.0° | 110.4° |
| C3' | O3' | HA | 102.3° | 106.9° |
| C2' | C3' | H3' | 114.0° | 110.6° |
| C3' | C2' | O2' | 109.1° | 110.9° |
| C3' | C2' | C1' | 97.4° | 102.1° |
| C3' | C2' | H2' | 108.8° | 110.9° |
| O2' | C2' | C1' | 123.0° | 110.9° |
| O2' | C2' | H2' | 108.8° | 110.8° |
| C2' | O2' | CA' | 122.9° | 106.8° |
| C1' | C2' | H2' | 108.7° | 110.9° |
| C2' | C1' | N1 | 130.2° | 110.8° |
| C2' | C1' | H1' | 106.2° | 110.6° |
| O2' | CA' | CB' | 125.6° | 109.5° |
| O2' | CA' | HA'1 | 106.5° | 109.4° |
| O2' | CA' | HA'2 | 106.5° | 109.4° |
| N1 | C1' | H1' | 106.3° | 110.6° |
| C1' | N1 | C2 | 124.2° | 119.7° |
| C1' | N1 | C6 | 118.8° | 119.7° |
| C2 | N1 | C6 | 116.9° | 120.6° |
| N1 | C2 | O2 | 123.2° | 119.5° |
| N1 | C2 | N3 | 116.6° | 121.0° |
| N1 | C6 | C5 | 123.8° | 119.7° |
| N1 | C6 | H6 | 118.1° | 120.1° |
| O2 | C2 | N3 | 120.0° | 119.6° |
| C2 | N3 | C4 | 127.2° | 120.3° |
| C2 | N3 | H3 | 116.4° | 119.9° |
| C4 | N3 | H3 | 116.4° | 119.8° |
| N3 | C4 | O4 | 120.8° | 120.4° |
| N3 | C4 | C5 | 112.7° | 119.4° |
| O4 | C4 | C5 | 126.5° | 120.3° |
| C4 | C5 | C6 | 122.3° | 119.1° |
| C4 | C5 | H5 | 118.9° | 120.5° |
| C6 | C5 | H5 | 118.8° | 120.4° |
| C5 | C6 | H6 | 118.1° | 120.2° |
| CB' | CA' | HA'1 | 106.5° | 109.5° |
| CB' | CA' | HA'2 | 106.5° | 109.5° |
| CA' | CB' | CC | 113.5° | 109.5° |
| CA' | CB' | HB'1 | 110.7° | 109.5° |
| CA' | CB' | HB'2 | 110.7° | 109.5° |
| HA'1 | CA' | HA'2 | 103.0° | 109.5° |
| CC | CB' | HB'1 | 110.7° | 109.4° |
| CC | CB' | HB'2 | 110.7° | 109.5° |
| CB' | CC | ND' | 114.5° | 109.5° |
| CB' | CC | HCC1 | 110.4° | 109.5° |
| CB' | CC | HCC2 | 110.4° | 109.5° |
| HB'1 | CB' | HB'2 | 99.6° | 109.5° |
| ND' | CC | HCC1 | 110.4° | 109.5° |
| ND' | CC | HCC2 | 110.4° | 109.5° |
| CC | ND' | HD'1 | 115.2° | 106.7° |
| CC | ND' | HD'2 | 115.1° | 106.7° |
| HCC1 | CC | HCC2 | 99.9° | 109.4° |
| HD'1 | ND' | HD'2 | 95.3° | 106.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 120.2° | 119.9° |
| O1P | P | O2P | O5' | 111.1° | 120.1° |
| O1P | P | O3P | O5' | 109.5° | 120.1° |
| O1P | P | O3P | H3P | 179.9° | 60.1° |
| O1P | P | O5' | C5' | 51.0° | 180.0° |
| O2P | P | O3P | O5' | 121.7° | 120.0° |
| O2P | P | O1P | H1P | 179.9° | 60.0° |
| O2P | P | O3P | H3P | 51.3° | 180.0° |
| O2P | P | O5' | C5' | 72.9° | 60.0° |
| O3P | P | O1P | H1P | 56.3° | 60.0° |
| O3P | P | O5' | C5' | 162.6° | 60.0° |
| O5' | P | O1P | H1P | 65.9° | 180.0° |
| O5' | P | O3P | H3P | 70.4° | 60.0° |
| P | O5' | C5' | C4' | 152.0° | 180.0° |
| P | O5' | C5' | H5'1 | 82.7° | 60.0° |
| P | O5' | C5' | H5'2 | 26.8° | 60.1° |
| O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 116.0° | 120.0° |
| O5' | C5' | C4' | O4' | 142.0° | 62.1° |
| O5' | C5' | C4' | C3' | 107.0° | 180.0° |
| O5' | C5' | C4' | H4' | 18.1° | 59.0° |
| C4' | C5' | H5'1 | H5'2 | 116.0° | 120.0° |
| C5' | C4' | O4' | C3' | 114.1° | 119.5° |
| C5' | C4' | O4' | H4' | 123.9° | 121.1° |
| C5' | C4' | C3' | H4' | 125.1° | 121.1° |
| C5' | C4' | O4' | C1' | 107.9° | 146.0° |
| C5' | C4' | C3' | O3' | 167.0° | 119.6° |
| C5' | C4' | C3' | C2' | 78.7° | 121.6° |
| C5' | C4' | C3' | H3' | 43.4° | 2.8° |
| H5'1 | C5' | C4' | O4' | 92.7° | 177.9° |
| H5'1 | C5' | C4' | C3' | 18.3° | 60.0° |
| H5'1 | C5' | C4' | H4' | 143.4° | 61.0° |
| H5'2 | C5' | C4' | O4' | 16.8° | 57.9° |
| H5'2 | C5' | C4' | C3' | 127.8° | 60.0° |
| H5'2 | C5' | C4' | H4' | 107.1° | 179.0° |
| O4' | C4' | C3' | H4' | 122.1° | 119.4° |
| O4' | C4' | C3' | O3' | 80.2° | 120.8° |
| O4' | C4' | C3' | C2' | 34.1° | 2.1° |
| O4' | C4' | C3' | H3' | 156.2° | 116.7° |
| C4' | O4' | C1' | C2' | 24.3° | 40.0° |
| C4' | O4' | C1' | N1 | 161.4° | 158.7° |
| C4' | O4' | C1' | H1' | 86.8° | 78.4° |
| C3' | C4' | O4' | C1' | 6.2° | 26.5° |
| C4' | C3' | O3' | C2' | 105.9° | 114.8° |
| C4' | C3' | O3' | H3' | 123.6° | 122.6° |
| C4' | C3' | C2' | H3' | 122.2° | 118.7° |
| C4' | C3' | O3' | HA | 180.0° | 65.2° |
| C4' | C3' | C2' | O2' | 175.3° | 139.1° |
| C4' | C3' | C2' | C1' | 46.5° | 20.8° |
| C4' | C3' | C2' | H2' | 66.2° | 97.4° |
| H4' | C4' | O4' | C1' | 128.3° | 92.9° |
| H4' | C4' | C3' | O3' | 41.9° | 1.4° |
| H4' | C4' | C3' | C2' | 156.2° | 117.3° |
| H4' | C4' | C3' | H3' | 81.7° | 123.9° |
| O4' | C1' | C2' | C3' | 43.7° | 37.0° |
| O4' | C1' | C2' | O2' | 162.2° | 155.2° |
| O4' | C1' | C2' | N1 | 119.9° | 118.6° |
| O4' | C1' | C2' | H1' | 111.2° | 118.5° |
| O4' | C1' | C2' | H2' | 69.1° | 81.2° |
| O4' | C1' | N1 | H1' | 111.7° | 122.9° |
| O4' | C1' | N1 | C2 | 52.0° | 58.2° |
| O4' | C1' | N1 | C6 | 124.3° | 121.5° |
| O3' | C3' | C2' | H3' | 130.5° | 122.5° |
| O3' | C3' | C2' | O2' | 67.9° | 20.3° |
| O3' | C3' | C2' | C1' | 60.9° | 97.9° |
| O3' | C3' | C2' | H2' | 173.6° | 143.9° |
| C2' | C3' | O3' | HA | 74.1° | 180.0° |
| C3' | C2' | O2' | C1' | 112.8° | 112.8° |
| C3' | C2' | O2' | H2' | 118.5° | 123.6° |
| C3' | C2' | C1' | H2' | 112.7° | 118.2° |
| C3' | C2' | O2' | CA' | 22.9° | 94.3° |
| C3' | C2' | C1' | N1 | 163.6° | 155.5° |
| C3' | C2' | C1' | H1' | 67.6° | 81.5° |
| H3' | C3' | O3' | HA | 56.4° | 57.4° |
| H3' | C3' | C2' | O2' | 62.6° | 102.2° |
| H3' | C3' | C2' | C1' | 168.6° | 139.6° |
| H3' | C3' | C2' | H2' | 55.9° | 21.4° |
| O2' | C2' | C1' | H2' | 128.7° | 123.6° |
| O2' | C2' | C1' | N1 | 77.8° | 86.2° |
| O2' | C2' | C1' | H1' | 51.0° | 36.7° |
| C2' | O2' | CA' | CB' | 4.2° | 180.0° |
| C2' | O2' | CA' | HA'1 | 121.1° | 60.0° |
| C2' | O2' | CA' | HA'2 | 129.5° | 60.0° |
| C1' | C2' | O2' | CA' | 135.6° | 152.9° |
| C2' | C1' | N1 | H1' | 128.9° | 123.0° |
| C2' | C1' | N1 | C2 | 171.4° | 55.9° |
| C2' | C1' | N1 | C6 | 4.9° | 124.4° |
| H2' | C2' | O2' | CA' | 95.7° | 29.3° |
| H2' | C2' | C1' | N1 | 50.9° | 37.4° |
| H2' | C2' | C1' | H1' | 179.7° | 160.3° |
| O2' | CA' | CB' | HA'1 | 125.3° | 119.9° |
| O2' | CA' | CB' | HA'2 | 125.3° | 120.0° |
| O2' | CA' | HA'1 | HA'2 | 111.9° | 120.0° |
| O2' | CA' | CB' | CC | 148.1° | 180.0° |
| O2' | CA' | CB' | HB'1 | 22.9° | 60.1° |
| O2' | CA' | CB' | HB'2 | 86.6° | 60.0° |
| C1' | N1 | C2 | C6 | 176.4° | 179.7° |
| C1' | N1 | C2 | O2 | 0.8° | 0.3° |
| C1' | N1 | C2 | N3 | 176.1° | 179.7° |
| C1' | N1 | C6 | C5 | 174.3° | 180.0° |
| C1' | N1 | C6 | H6 | 5.7° | 0.0° |
| H1' | C1' | N1 | C2 | 59.7° | 178.9° |
| H1' | C1' | N1 | C6 | 124.0° | 1.4° |
| N1 | C2 | O2 | N3 | 175.1° | 179.4° |
| N1 | C2 | N3 | C4 | 2.4° | 0.5° |
| N1 | C2 | N3 | H3 | 177.6° | 179.7° |
| C2 | N1 | C6 | C5 | 9.1° | 0.3° |
| C2 | N1 | C6 | H6 | 170.9° | 179.7° |
| C6 | N1 | C2 | O2 | 177.2° | 180.0° |
| C6 | N1 | C2 | N3 | 7.5° | 0.5° |
| N1 | C6 | C5 | C4 | 5.0° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 175.0° | 180.0° |
| O2 | C2 | N3 | C4 | 177.8° | 180.0° |
| O2 | C2 | N3 | H3 | 2.2° | 0.3° |
| C2 | N3 | C4 | H3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 177.8° | 179.7° |
| C2 | N3 | C4 | C5 | 1.8° | 0.3° |
| N3 | C4 | O4 | C5 | 179.5° | 180.0° |
| N3 | C4 | C5 | C6 | 0.7° | 0.0° |
| N3 | C4 | C5 | H5 | 179.3° | 180.0° |
| H3 | N3 | C4 | O4 | 2.2° | 0.0° |
| H3 | N3 | C4 | C5 | 178.3° | 180.0° |
| O4 | C4 | C5 | C6 | 178.9° | 180.0° |
| O4 | C4 | C5 | H5 | 1.1° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 175.0° | 180.0° |
| H5 | C5 | C6 | H6 | 5.0° | 0.0° |
| CB' | CA' | HA'1 | HA'2 | 111.9° | 120.1° |
| CA' | CB' | CC | HB'1 | 125.3° | 120.0° |
| CA' | CB' | CC | HB'2 | 125.2° | 120.0° |
| CA' | CB' | HB'1 | HB'2 | 116.6° | 120.1° |
| CA' | CB' | CC | ND' | 142.8° | 180.0° |
| CA' | CB' | CC | HCC1 | 91.9° | 60.0° |
| CA' | CB' | CC | HCC2 | 17.5° | 60.0° |
| HA'1 | CA' | CB' | CC | 86.6° | 60.1° |
| HA'1 | CA' | CB' | HB'1 | 148.1° | 180.0° |
| HA'1 | CA' | CB' | HB'2 | 38.6° | 59.9° |
| HA'2 | CA' | CB' | CC | 22.9° | 60.0° |
| HA'2 | CA' | CB' | HB'1 | 102.4° | 59.9° |
| HA'2 | CA' | CB' | HB'2 | 148.1° | NaN° |
| CC | CB' | HB'1 | HB'2 | 116.6° | 120.0° |
| CB' | CC | ND' | HCC1 | 125.3° | 120.0° |
| CB' | CC | ND' | HCC2 | 125.3° | 120.0° |
| CB' | CC | HCC1 | HCC2 | 116.2° | 120.0° |
| CB' | CC | ND' | HD'1 | 32.5° | 180.0° |
| CB' | CC | ND' | HD'2 | 76.9° | 66.2° |
| HB'1 | CB' | CC | ND' | 17.5° | 60.0° |
| HB'1 | CB' | CC | HCC1 | 142.8° | 180.0° |
| HB'1 | CB' | CC | HCC2 | 107.8° | 60.0° |
| HB'2 | CB' | CC | ND' | 92.0° | 60.0° |
| HB'2 | CB' | CC | HCC1 | 33.3° | 60.0° |
| HB'2 | CB' | CC | HCC2 | 142.8° | 180.0° |
| ND' | CC | HCC1 | HCC2 | 116.2° | 120.0° |
| CC | ND' | HD'1 | HD'2 | 121.0° | 113.8° |
| HCC1 | CC | ND' | HD'1 | 157.8° | 60.0° |
| HCC1 | CC | ND' | HD'2 | 48.4° | 53.8° |
| HCC2 | CC | ND' | HD'1 | 92.7° | 60.0° |
| HCC2 | CC | ND' | HD'2 | 157.8° | 173.7° |
