U2S
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C4 | C5 | sing | 1.42Å | 1.39Å | |
C4 | N3 | sing | 1.35Å | 1.40Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C5 | C6 | doub | 1.35Å | 1.40Å | |
C6 | N1 | sing | 1.37Å | 1.42Å | |
N1 | C1' | sing | 1.46Å | 1.50Å | |
N1 | C2 | sing | 1.35Å | 1.39Å | |
N3 | C2 | sing | 1.35Å | 1.39Å | |
OAM | CAK | sing | 1.43Å | 1.44Å | |
OAM | CAJ | sing | 1.43Å | 1.45Å | |
CAK | CAM | sing | 1.53Å | 1.54Å | |
CAM | NBA | sing | 1.47Å | 1.47Å | |
CAJ | CAL | sing | 1.53Å | 1.53Å | |
CAL | NBA | sing | 1.47Å | 1.47Å | |
NBA | C5' | sing | 1.47Å | 1.46Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C4' | O4' | sing | 1.44Å | 1.48Å | |
C4' | C3' | sing | 1.55Å | 1.51Å | |
O4' | C1' | sing | 1.43Å | 1.46Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C2' | sing | 1.55Å | 1.51Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | C1' | sing | 1.54Å | 1.55Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
CAK | HAK | sing | 1.09Å | 1.10Å | |
CAK | HAKA | sing | 1.09Å | 1.10Å | |
CAM | HAM | sing | 1.09Å | 1.10Å | |
CAM | HAMA | sing | 1.09Å | 1.10Å | |
CAJ | HAJ | sing | 1.09Å | 1.10Å | |
CAJ | HAJA | sing | 1.09Å | 1.10Å | |
CAL | HAL | sing | 1.09Å | 1.10Å | |
CAL | HALA | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | H1' | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5 | C4 | N3 | 119.6° | 119.4° |
C5 | C4 | O4 | 121.2° | 120.3° |
C4 | C5 | C6 | 118.7° | 119.1° |
C4 | C5 | H5 | 120.6° | 120.4° |
N3 | C4 | O4 | 119.2° | 120.3° |
C4 | N3 | C2 | 122.3° | 120.2° |
C4 | N3 | HN3 | 118.8° | 119.9° |
C5 | C6 | N1 | 121.7° | 119.7° |
C6 | C5 | H5 | 120.7° | 120.5° |
C5 | C6 | H6 | 119.2° | 120.2° |
C6 | N1 | C1' | 121.5° | 119.7° |
C6 | N1 | C2 | 119.0° | 120.6° |
N1 | C6 | H6 | 119.2° | 120.1° |
C1' | N1 | C2 | 119.5° | 119.7° |
N1 | C1' | O4' | 109.4° | 109.8° |
N1 | C1' | C2' | 114.5° | 109.8° |
N1 | C1' | H1' | 104.8° | 109.9° |
N1 | C2 | N3 | 118.7° | 120.9° |
N1 | C2 | O2 | 121.9° | 119.5° |
N3 | C2 | O2 | 119.3° | 119.6° |
C2 | N3 | HN3 | 118.9° | 119.8° |
CAK | OAM | CAJ | 111.4° | 113.8° |
OAM | CAK | CAM | 108.7° | 109.2° |
OAM | CAK | HAK | 109.8° | 109.5° |
OAM | CAK | HAKA | 109.9° | 109.5° |
OAM | CAJ | CAL | 107.1° | 109.3° |
OAM | CAJ | HAJ | 110.3° | 109.5° |
OAM | CAJ | HAJA | 110.7° | 109.4° |
CAK | CAM | NBA | 110.5° | 109.3° |
CAM | CAK | HAK | 109.7° | 109.5° |
CAM | CAK | HAKA | 109.9° | 109.5° |
CAK | CAM | HAM | 109.1° | 109.5° |
CAK | CAM | HAMA | 108.9° | 109.5° |
CAM | NBA | CAL | 113.0° | 110.8° |
CAM | NBA | C5' | 107.1° | 111.0° |
NBA | CAM | HAM | 109.1° | 109.5° |
NBA | CAM | HAMA | 108.9° | 109.5° |
CAJ | CAL | NBA | 110.1° | 109.3° |
CAL | CAJ | HAJ | 110.3° | 109.5° |
CAL | CAJ | HAJA | 110.8° | 109.5° |
CAJ | CAL | HAL | 109.3° | 109.5° |
CAJ | CAL | HALA | 109.2° | 109.5° |
CAL | NBA | C5' | 105.9° | 111.0° |
NBA | CAL | HAL | 109.3° | 109.5° |
NBA | CAL | HALA | 109.1° | 109.5° |
NBA | C5' | C4' | 112.1° | 109.5° |
NBA | C5' | H5' | 108.6° | 109.5° |
NBA | C5' | H5'A | 108.0° | 109.5° |
C5' | C4' | O4' | 121.8° | 110.3° |
C5' | C4' | C3' | 110.3° | 110.3° |
C4' | C5' | H5' | 108.6° | 109.5° |
C4' | C5' | H5'A | 108.0° | 109.5° |
C5' | C4' | H4' | 97.6° | 110.3° |
O4' | C4' | C3' | 99.4° | 105.1° |
C4' | O4' | C1' | 102.2° | 110.0° |
O4' | C4' | H4' | 108.8° | 110.3° |
C4' | C3' | O3' | 114.9° | 111.2° |
C4' | C3' | C2' | 99.7° | 101.0° |
C3' | C4' | H4' | 120.6° | 110.4° |
C4' | C3' | H3' | 112.3° | 111.2° |
O4' | C1' | C2' | 105.1° | 107.5° |
O4' | C1' | H1' | 114.2° | 109.8° |
O3' | C3' | C2' | 109.1° | 111.1° |
O3' | C3' | H3' | 103.5° | 111.0° |
C3' | O3' | HO3' | 109.5° | 114.1° |
C3' | C2' | O2' | 102.5° | 110.9° |
C3' | C2' | C1' | 103.1° | 102.3° |
C2' | C3' | H3' | 117.8° | 111.1° |
C3' | C2' | H2' | 118.2° | 110.8° |
O2' | C2' | C1' | 111.2° | 110.8° |
O2' | C2' | H2' | 111.0° | 110.7° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C1' | C2' | H2' | 110.4° | 111.0° |
C2' | C1' | H1' | 109.1° | 109.9° |
HAK | CAK | HAKA | 108.8° | 109.6° |
HAM | CAM | HAMA | 110.3° | 109.5° |
HAJ | CAJ | HAJA | 107.6° | 109.5° |
HAL | CAL | HALA | 109.9° | 109.6° |
H5' | C5' | H5'A | 111.6° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C5 | C4 | N3 | O4 | 178.0° | 179.7° |
C4 | C5 | C6 | H5 | 180.0° | 179.9° |
C4 | C5 | C6 | N1 | 0.8° | 0.0° |
C5 | C4 | N3 | C2 | 1.6° | 0.0° |
C4 | C5 | C6 | H6 | 179.2° | 180.0° |
C5 | C4 | N3 | HN3 | 178.4° | 179.9° |
N3 | C4 | C5 | C6 | 0.9° | 0.0° |
C4 | N3 | C2 | N1 | 0.5° | 0.1° |
C4 | N3 | C2 | HN3 | 180.0° | 179.9° |
C4 | N3 | C2 | O2 | 177.5° | 180.0° |
N3 | C4 | C5 | H5 | 179.1° | 180.0° |
O4 | C4 | C5 | C6 | 178.9° | 179.7° |
O4 | C4 | N3 | C2 | 179.6° | 179.7° |
O4 | C4 | C5 | H5 | 1.1° | 0.3° |
O4 | C4 | N3 | HN3 | 0.4° | 0.3° |
C5 | C6 | N1 | H6 | 180.0° | 180.0° |
C5 | C6 | N1 | C1' | 179.7° | 180.0° |
C5 | C6 | N1 | C2 | 1.8° | 0.0° |
C6 | N1 | C1' | C2 | 177.8° | 179.9° |
C6 | N1 | C2 | N3 | 1.1° | 0.1° |
C6 | N1 | C1' | O4' | 13.9° | 126.5° |
C6 | N1 | C1' | C2' | 103.8° | 115.4° |
C6 | N1 | C2 | O2 | 179.1° | 180.0° |
N1 | C6 | C5 | H5 | 179.2° | 180.0° |
C6 | N1 | C1' | H1' | 136.7° | 5.6° |
C1' | N1 | C2 | N3 | 179.0° | 180.0° |
N1 | C1' | O4' | C4' | 93.0° | 117.8° |
N1 | C1' | O4' | C2' | 123.4° | 119.5° |
N1 | C1' | O4' | H1' | 117.1° | 120.9° |
N1 | C1' | C2' | C3' | 122.5° | 140.8° |
N1 | C1' | C2' | O2' | 128.4° | 100.9° |
N1 | C1' | C2' | H1' | 117.0° | 121.0° |
C1' | N1 | C2 | O2 | 3.0° | 0.1° |
C1' | N1 | C6 | H6 | 0.3° | 0.0° |
N1 | C1' | C2' | H2' | 4.7° | 22.6° |
N1 | C2 | N3 | O2 | 178.0° | 179.9° |
C2 | N1 | C1' | O4' | 164.0° | 53.6° |
C2 | N1 | C1' | C2' | 78.4° | 64.5° |
C2 | N1 | C6 | H6 | 178.1° | 179.9° |
N1 | C2 | N3 | HN3 | 179.5° | 180.0° |
C2 | N1 | C1' | H1' | 41.1° | 174.5° |
OAM | CAK | CAM | HAK | 120.0° | 119.9° |
OAM | CAK | CAM | HAKA | 120.3° | 119.9° |
OAM | CAK | CAM | NBA | 54.5° | 56.8° |
CAK | OAM | CAJ | CAL | 65.5° | 58.6° |
OAM | CAK | HAK | HAKA | 120.4° | 120.1° |
OAM | CAK | CAM | HAM | 174.5° | 176.8° |
OAM | CAK | CAM | HAMA | 65.1° | 63.1° |
CAK | OAM | CAJ | HAJ | 174.5° | 178.6° |
CAK | OAM | CAJ | HAJA | 55.4° | 61.3° |
CAJ | OAM | CAK | CAM | 63.6° | 58.6° |
OAM | CAJ | CAL | HAJ | 120.0° | 120.0° |
OAM | CAJ | CAL | HAJA | 120.9° | 119.9° |
OAM | CAJ | CAL | NBA | 58.8° | 56.8° |
CAJ | OAM | CAK | HAK | 56.4° | 61.3° |
CAJ | OAM | CAK | HAKA | 176.1° | 178.5° |
OAM | CAJ | HAJ | HAJA | 120.9° | 120.0° |
OAM | CAJ | CAL | HAL | 61.2° | 63.1° |
OAM | CAJ | CAL | HALA | 178.5° | 176.8° |
CAK | CAM | NBA | HAM | 120.0° | 119.9° |
CAK | CAM | NBA | HAMA | 119.6° | 120.0° |
CAK | CAM | NBA | CAL | 51.5° | 58.6° |
CAK | CAM | NBA | C5' | 167.8° | 177.6° |
CAM | CAK | HAK | HAKA | 120.3° | 120.1° |
CAK | CAM | HAM | HAMA | 119.6° | 120.1° |
CAM | NBA | CAL | CAJ | 54.0° | 58.6° |
CAM | NBA | CAL | C5' | 117.0° | 123.8° |
CAM | NBA | C5' | C4' | 130.2° | 75.7° |
NBA | CAM | CAK | HAK | 65.5° | 63.0° |
NBA | CAM | CAK | HAKA | 174.8° | 176.8° |
NBA | CAM | HAM | HAMA | 119.6° | 120.1° |
CAM | NBA | CAL | HAL | 66.0° | 61.3° |
CAM | NBA | CAL | HALA | 173.7° | 178.5° |
CAM | NBA | C5' | H5' | 10.2° | 44.3° |
CAM | NBA | C5' | H5'A | 110.9° | 164.3° |
CAJ | CAL | NBA | HAL | 120.0° | 119.9° |
CAJ | CAL | NBA | HALA | 119.8° | 120.0° |
CAJ | CAL | NBA | C5' | 171.0° | 177.6° |
CAL | CAJ | HAJ | HAJA | 121.0° | 120.1° |
CAJ | CAL | HAL | HALA | 119.8° | 120.1° |
CAL | NBA | C5' | C4' | 108.9° | 160.6° |
CAL | NBA | CAM | HAM | 171.5° | 178.6° |
CAL | NBA | CAM | HAMA | 68.0° | 61.4° |
NBA | CAL | CAJ | HAJ | 178.8° | 176.8° |
NBA | CAL | CAJ | HAJA | 62.1° | 63.1° |
NBA | CAL | HAL | HALA | 119.7° | 120.1° |
CAL | NBA | C5' | H5' | 131.1° | 79.4° |
CAL | NBA | C5' | H5'A | 10.0° | 40.6° |
NBA | C5' | C4' | H5' | 120.0° | 120.0° |
NBA | C5' | C4' | H5'A | 118.8° | 120.0° |
NBA | C5' | C4' | O4' | 13.2° | 62.3° |
NBA | C5' | C4' | C3' | 128.9° | 178.0° |
C5' | NBA | CAM | HAM | 72.3° | 57.6° |
C5' | NBA | CAM | HAMA | 48.2° | 62.5° |
C5' | NBA | CAL | HAL | 51.0° | 62.5° |
C5' | NBA | CAL | HALA | 69.3° | 57.6° |
NBA | C5' | H5' | H5'A | 118.9° | 120.0° |
NBA | C5' | C4' | H4' | 104.5° | 59.8° |
C5' | C4' | O4' | C3' | 121.1° | 118.9° |
C5' | C4' | O4' | H4' | 112.0° | 122.1° |
C5' | C4' | C3' | H4' | 112.4° | 122.2° |
C5' | C4' | O4' | C1' | 173.0° | 143.4° |
C5' | C4' | C3' | O3' | 62.0° | 86.7° |
C5' | C4' | C3' | C2' | 178.5° | 155.3° |
C4' | C5' | H5' | H5'A | 119.0° | 120.0° |
C5' | C4' | C3' | H3' | 55.9° | 37.4° |
O4' | C4' | C3' | H4' | 118.5° | 118.9° |
O4' | C4' | C3' | O3' | 168.9° | 154.4° |
O4' | C4' | C3' | C2' | 52.5° | 36.4° |
C4' | O4' | C1' | C2' | 30.4° | 1.7° |
O4' | C4' | C5' | H5' | 133.2° | 177.6° |
O4' | C4' | C5' | H5'A | 105.6° | 57.7° |
O4' | C4' | C3' | H3' | 73.1° | 81.5° |
C4' | O4' | C1' | H1' | 149.9° | 121.3° |
C3' | C4' | O4' | C1' | 51.9° | 24.4° |
C4' | C3' | O3' | C2' | 110.9° | 111.6° |
C4' | C3' | O3' | H3' | 122.8° | 124.3° |
C4' | C3' | C2' | H3' | 121.8° | 117.9° |
C4' | C3' | C2' | O2' | 148.8° | 152.3° |
C4' | C3' | C2' | C1' | 33.2° | 34.1° |
C3' | C4' | C5' | H5' | 111.1° | 61.9° |
C3' | C4' | C5' | H5'A | 10.1° | 58.0° |
C4' | C3' | O3' | HO3' | 14.3° | 180.0° |
C4' | C3' | C2' | H2' | 88.9° | 84.3° |
O4' | C1' | C2' | C3' | 2.4° | 21.3° |
O4' | C1' | C2' | O2' | 111.6° | 139.6° |
O4' | C1' | C2' | H1' | 122.9° | 119.5° |
C1' | O4' | C4' | H4' | 75.0° | 94.6° |
O4' | C1' | C2' | H2' | 124.8° | 96.9° |
O3' | C3' | C2' | H3' | 117.5° | 124.1° |
O3' | C3' | C2' | O2' | 90.5° | 89.7° |
O3' | C3' | C2' | C1' | 153.9° | 152.1° |
O3' | C3' | C4' | H4' | 50.4° | 35.4° |
O3' | C3' | C2' | H2' | 31.9° | 33.7° |
C3' | C2' | O2' | C1' | 109.6° | 112.9° |
C3' | C2' | O2' | H2' | 127.1° | 123.5° |
C3' | C2' | C1' | H2' | 127.2° | 118.3° |
C2' | C3' | C4' | H4' | 66.0° | 82.5° |
C2' | C3' | O3' | HO3' | 96.6° | 68.4° |
C3' | C2' | O2' | HO2' | 50.3° | 61.4° |
C3' | C2' | C1' | H1' | 120.5° | 98.2° |
O2' | C2' | C1' | H2' | 123.7° | 123.5° |
O2' | C2' | C3' | H3' | 27.0° | 34.4° |
O2' | C2' | C1' | H1' | 11.3° | 20.1° |
C1' | C2' | C3' | H3' | 88.6° | 83.8° |
C1' | C2' | O2' | HO2' | 159.9° | 174.2° |
O2 | C2 | N3 | HN3 | 2.5° | 0.1° |
H5 | C5 | C6 | H6 | 0.8° | 0.1° |
HAK | CAK | CAM | HAM | 54.5° | 56.9° |
HAK | CAK | CAM | HAMA | 174.9° | 177.0° |
HAKA | CAK | CAM | HAM | 65.2° | 63.3° |
HAKA | CAK | CAM | HAMA | 55.3° | 56.8° |
HAJ | CAJ | CAL | HAL | 58.8° | 56.9° |
HAJ | CAJ | CAL | HALA | 61.4° | 63.3° |
HAJA | CAJ | CAL | HAL | 177.9° | 177.0° |
HAJA | CAJ | CAL | HALA | 57.6° | 56.9° |
H5' | C5' | C4' | H4' | 15.5° | 60.3° |
H5'A | C5' | C4' | H4' | 136.7° | 179.8° |
H4' | C4' | C3' | H3' | 168.3° | 159.6° |
H3' | C3' | O3' | HO3' | 137.1° | 55.7° |
H3' | C3' | C2' | H2' | 149.4° | 157.8° |
H2' | C2' | O2' | HO2' | 76.7° | 62.1° |
H2' | C2' | C1' | H1' | 112.4° | 143.5° |