U2P

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5'	C5'	sing	1.43Å	1.44Å
O5'	H5'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	N1	sing	1.46Å	1.47Å
C1'	C2'	sing	1.55Å	1.53Å
C1'	H1'	sing	1.09Å	1.11Å
N1	C6	sing	1.37Å	1.38Å
N1	C2	sing	1.35Å	1.39Å
C6	C5	doub	1.35Å	1.34Å
C6	H6	sing	1.08Å	1.10Å
C5	C4	sing	1.42Å	1.43Å
C5	H5	sing	1.08Å	1.10Å
C4	O4	doub	1.22Å	1.23Å
C4	N3	sing	1.35Å	1.38Å
N3	C2	sing	1.35Å	1.37Å
N3	HN3	sing	0.97Å	1.02Å
C2	O2	doub	1.22Å	1.22Å
C2'	O2'	sing	1.43Å	1.42Å
C2'	C3'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.11Å
O2'	P	sing	1.61Å	1.61Å
P	O1P	doub	1.48Å	1.52Å
P	O2P	sing	1.61Å	1.52Å
P	O3P	sing	1.61Å	1.52Å
O2P	H2P	sing	0.97Å	0.95Å
O3P	H3P	sing	0.97Å	0.95Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	H1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5'	O5'	H5'	110.5°	106.8°
O5'	C5'	C4'	110.4°	109.5°
O5'	C5'	H5'1	111.8°	109.5°
O5'	C5'	H5'2	111.9°	109.5°
C4'	C5'	H5'1	111.9°	109.5°
C4'	C5'	H5'2	111.8°	109.5°
C5'	C4'	O4'	109.6°	109.9°
C5'	C4'	C3'	116.0°	109.9°
C5'	C4'	H4'	103.4°	109.9°
H5'1	C5'	H5'2	98.6°	109.5°
O4'	C4'	C3'	104.4°	107.4°
O4'	C4'	H4'	115.1°	109.9°
C4'	O4'	C1'	109.8°	107.0°
C3'	C4'	H4'	108.7°	109.8°
C4'	C3'	C2'	102.1°	104.0°
C4'	C3'	O3'	110.1°	110.8°
C4'	C3'	H3'	115.0°	110.5°
O4'	C1'	N1	107.9°	110.6°
O4'	C1'	C2'	107.2°	103.5°
O4'	C1'	H1'	114.5°	110.6°
N1	C1'	C2'	116.1°	110.8°
N1	C1'	H1'	105.3°	110.6°
C1'	N1	C6	121.3°	119.7°
C1'	N1	C2	118.0°	119.7°
C2'	C1'	H1'	106.1°	110.6°
C1'	C2'	O2'	106.8°	110.8°
C1'	C2'	C3'	100.9°	102.1°
C1'	C2'	H2'	117.8°	110.9°
C6	N1	C2	120.7°	120.6°
N1	C6	C5	122.8°	119.7°
N1	C6	H6	120.1°	120.1°
N1	C2	N3	114.9°	120.9°
N1	C2	O2	123.2°	119.5°
C5	C6	H6	117.0°	120.2°
C6	C5	C4	119.8°	119.1°
C6	C5	H5	116.9°	120.5°
C4	C5	H5	123.4°	120.4°
C5	C4	O4	125.8°	120.3°
C5	C4	N3	114.7°	119.4°
O4	C4	N3	119.5°	120.3°
C4	N3	C2	127.1°	120.3°
C4	N3	HN3	116.8°	119.9°
C2	N3	HN3	116.1°	119.9°
N3	C2	O2	121.9°	119.5°
O2'	C2'	C3'	113.3°	110.9°
O2'	C2'	H2'	106.4°	110.8°
C2'	O2'	P	120.7°	106.8°
C3'	C2'	H2'	111.8°	111.0°
C2'	C3'	O3'	113.0°	110.5°
C2'	C3'	H3'	112.3°	110.5°
O2'	P	O1P	107.4°	109.4°
O2'	P	O2P	104.5°	109.5°
O2'	P	O3P	107.1°	109.5°
O1P	P	O2P	112.2°	109.5°
O1P	P	O3P	112.9°	109.5°
O2P	P	O3P	112.2°	109.5°
P	O2P	H2P	104.5°	106.8°
P	O3P	H3P	107.2°	106.8°
O3'	C3'	H3'	104.6°	110.4°
C3'	O3'	H1	110.1°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	117.8°	120.0°
O5'	C5'	C4'	O4'	57.6°	66.7°
O5'	C5'	C4'	C3'	60.2°	175.3°
O5'	C5'	C4'	H4'	179.1°	54.3°
H5'	O5'	C5'	C4'	180.0°	180.0°
H5'	O5'	C5'	H5'1	54.7°	60.0°
H5'	O5'	C5'	H5'2	54.8°	60.0°
C4'	C5'	H5'1	H5'2	117.7°	120.0°
C5'	C4'	O4'	C3'	124.9°	119.5°
C5'	C4'	O4'	H4'	116.1°	121.1°
C5'	C4'	C3'	H4'	115.9°	121.0°
C5'	C4'	O4'	C1'	144.1°	145.9°
C5'	C4'	C3'	C2'	156.8°	121.4°
C5'	C4'	C3'	O3'	83.0°	119.9°
C5'	C4'	C3'	H3'	34.9°	2.8°
H5'1	C5'	C4'	O4'	67.6°	53.3°
H5'1	C5'	C4'	C3'	174.5°	64.7°
H5'1	C5'	C4'	H4'	55.7°	174.3°
H5'2	C5'	C4'	O4'	177.1°	173.3°
H5'2	C5'	C4'	C3'	65.0°	55.3°
H5'2	C5'	C4'	H4'	53.8°	65.7°
O4'	C4'	C3'	H4'	123.4°	119.5°
C4'	O4'	C1'	N1	120.0°	158.7°
C4'	O4'	C1'	C2'	5.6°	40.1°
C4'	O4'	C1'	H1'	123.0°	78.4°
O4'	C4'	C3'	C2'	36.1°	1.9°
O4'	C4'	C3'	O3'	156.3°	120.6°
O4'	C4'	C3'	H3'	85.8°	116.7°
C3'	C4'	O4'	C1'	19.3°	26.4°
C4'	C3'	C2'	C1'	38.1°	21.0°
C4'	C3'	C2'	O2'	75.6°	139.1°
C4'	C3'	C2'	O3'	118.2°	118.9°
C4'	C3'	C2'	H3'	123.8°	118.6°
C4'	C3'	C2'	H2'	164.2°	97.3°
C4'	C3'	O3'	H3'	124.1°	122.7°
C4'	C3'	O3'	H1	180.0°	65.3°
H4'	C4'	O4'	C1'	99.8°	93.0°
H4'	C4'	C3'	C2'	87.3°	117.6°
H4'	C4'	C3'	O3'	33.0°	1.1°
H4'	C4'	C3'	H3'	150.8°	123.8°
O4'	C1'	N1	C2'	120.2°	114.1°
O4'	C1'	N1	H1'	122.7°	122.9°
O4'	C1'	C2'	H1'	122.8°	118.5°
O4'	C1'	N1	C6	42.3°	126.5°
O4'	C1'	N1	C2	136.8°	53.3°
O4'	C1'	C2'	O2'	90.9°	155.2°
O4'	C1'	C2'	C3'	27.7°	37.1°
O4'	C1'	C2'	H2'	149.7°	81.3°
N1	C1'	C2'	H1'	116.6°	122.9°
C1'	N1	C6	C2	179.1°	179.8°
C1'	N1	C6	C5	177.8°	180.0°
C1'	N1	C6	H6	2.2°	0.0°
C1'	N1	C2	N3	177.6°	179.7°
C1'	N1	C2	O2	2.6°	0.3°
N1	C1'	C2'	O2'	148.5°	86.2°
N1	C1'	C2'	C3'	92.9°	155.6°
N1	C1'	C2'	H2'	29.0°	37.3°
C2'	C1'	N1	C6	77.9°	119.4°
C2'	C1'	N1	C2	102.9°	60.8°
C1'	C2'	O2'	C3'	110.1°	112.7°
C1'	C2'	O2'	H2'	126.6°	123.6°
C1'	C2'	C3'	H2'	126.1°	118.3°
C1'	C2'	O2'	P	157.0°	120.0°
C1'	C2'	C3'	O3'	156.4°	97.9°
C1'	C2'	C3'	H3'	85.6°	139.6°
H1'	C1'	N1	C6	165.1°	3.6°
H1'	C1'	N1	C2	14.1°	176.2°
H1'	C1'	C2'	O2'	31.9°	36.7°
H1'	C1'	C2'	C3'	150.5°	81.4°
H1'	C1'	C2'	H2'	87.6°	160.2°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	C4	0.1°	0.1°
N1	C6	C5	H5	179.9°	180.0°
C6	N1	C2	N3	1.6°	0.5°
C6	N1	C2	O2	178.3°	179.9°
C2	N1	C6	C5	1.3°	0.2°
C2	N1	C6	H6	178.7°	179.7°
N1	C2	N3	C4	0.8°	0.6°
N1	C2	N3	O2	179.9°	179.4°
N1	C2	N3	HN3	179.2°	179.8°
C6	C5	C4	H5	180.0°	179.9°
C6	C5	C4	O4	178.0°	180.0°
C6	C5	C4	N3	0.7°	0.0°
H6	C6	C5	C4	180.0°	180.0°
H6	C6	C5	H5	0.1°	0.1°
C5	C4	O4	N3	178.7°	180.0°
C5	C4	N3	C2	0.4°	0.3°
C5	C4	N3	HN3	179.6°	180.0°
H5	C5	C4	O4	1.9°	0.1°
H5	C5	C4	N3	179.3°	180.0°
O4	C4	N3	C2	178.5°	179.7°
O4	C4	N3	HN3	1.5°	0.0°
C4	N3	C2	HN3	180.0°	179.7°
C4	N3	C2	O2	179.1°	180.0°
HN3	N3	C2	O2	0.9°	0.3°
O2'	C2'	C3'	H2'	120.2°	123.6°
C2'	O2'	P	O1P	62.1°	55.0°
C2'	O2'	P	O2P	178.7°	64.9°
C2'	O2'	P	O3P	59.5°	175.0°
O2'	C2'	C3'	O3'	42.6°	20.2°
O2'	C2'	C3'	H3'	160.6°	102.3°
C3'	C2'	O2'	P	92.9°	127.3°
C2'	C3'	O3'	H3'	122.4°	122.5°
C2'	C3'	O3'	H1	66.6°	180.0°
H2'	C2'	O2'	P	30.4°	3.6°
H2'	C2'	C3'	O3'	77.6°	143.8°
H2'	C2'	C3'	H3'	40.4°	21.3°
O2'	P	O1P	O2P	114.2°	120.0°
O2'	P	O1P	O3P	117.9°	120.0°
O2'	P	O2P	O3P	115.7°	120.0°
O2'	P	O2P	H2P	180.0°	60.0°
O2'	P	O3P	H3P	180.0°	179.9°
O1P	P	O2P	O3P	128.3°	120.0°
O1P	P	O2P	H2P	64.1°	180.0°
O1P	P	O3P	H3P	62.0°	60.0°
O2P	P	O3P	H3P	65.9°	60.0°
O3P	P	O2P	H2P	64.3°	60.0°
H3'	C3'	O3'	H1	55.9°	57.4°

Definition date:	2003-02-26
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	1O0M