U2P
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.44Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | N1 | sing | 1.46Å | 1.47Å | |
C1' | C2' | sing | 1.55Å | 1.53Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N1 | C6 | sing | 1.37Å | 1.38Å | |
N1 | C2 | sing | 1.35Å | 1.39Å | |
C6 | C5 | doub | 1.35Å | 1.34Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5 | C4 | sing | 1.42Å | 1.43Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | N3 | sing | 1.35Å | 1.38Å | |
N3 | C2 | sing | 1.35Å | 1.37Å | |
N3 | HN3 | sing | 0.97Å | 1.02Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | P | sing | 1.61Å | 1.61Å | |
P | O1P | doub | 1.48Å | 1.52Å | |
P | O2P | sing | 1.61Å | 1.52Å | |
P | O3P | sing | 1.61Å | 1.52Å | |
O2P | H2P | sing | 0.97Å | 0.95Å | |
O3P | H3P | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | H1 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | H5' | 110.5° | 106.8° |
O5' | C5' | C4' | 110.4° | 109.5° |
O5' | C5' | H5'1 | 111.8° | 109.5° |
O5' | C5' | H5'2 | 111.9° | 109.5° |
C4' | C5' | H5'1 | 111.9° | 109.5° |
C4' | C5' | H5'2 | 111.8° | 109.5° |
C5' | C4' | O4' | 109.6° | 109.9° |
C5' | C4' | C3' | 116.0° | 109.9° |
C5' | C4' | H4' | 103.4° | 109.9° |
H5'1 | C5' | H5'2 | 98.6° | 109.5° |
O4' | C4' | C3' | 104.4° | 107.4° |
O4' | C4' | H4' | 115.1° | 109.9° |
C4' | O4' | C1' | 109.8° | 107.0° |
C3' | C4' | H4' | 108.7° | 109.8° |
C4' | C3' | C2' | 102.1° | 104.0° |
C4' | C3' | O3' | 110.1° | 110.8° |
C4' | C3' | H3' | 115.0° | 110.5° |
O4' | C1' | N1 | 107.9° | 110.6° |
O4' | C1' | C2' | 107.2° | 103.5° |
O4' | C1' | H1' | 114.5° | 110.6° |
N1 | C1' | C2' | 116.1° | 110.8° |
N1 | C1' | H1' | 105.3° | 110.6° |
C1' | N1 | C6 | 121.3° | 119.7° |
C1' | N1 | C2 | 118.0° | 119.7° |
C2' | C1' | H1' | 106.1° | 110.6° |
C1' | C2' | O2' | 106.8° | 110.8° |
C1' | C2' | C3' | 100.9° | 102.1° |
C1' | C2' | H2' | 117.8° | 110.9° |
C6 | N1 | C2 | 120.7° | 120.6° |
N1 | C6 | C5 | 122.8° | 119.7° |
N1 | C6 | H6 | 120.1° | 120.1° |
N1 | C2 | N3 | 114.9° | 120.9° |
N1 | C2 | O2 | 123.2° | 119.5° |
C5 | C6 | H6 | 117.0° | 120.2° |
C6 | C5 | C4 | 119.8° | 119.1° |
C6 | C5 | H5 | 116.9° | 120.5° |
C4 | C5 | H5 | 123.4° | 120.4° |
C5 | C4 | O4 | 125.8° | 120.3° |
C5 | C4 | N3 | 114.7° | 119.4° |
O4 | C4 | N3 | 119.5° | 120.3° |
C4 | N3 | C2 | 127.1° | 120.3° |
C4 | N3 | HN3 | 116.8° | 119.9° |
C2 | N3 | HN3 | 116.1° | 119.9° |
N3 | C2 | O2 | 121.9° | 119.5° |
O2' | C2' | C3' | 113.3° | 110.9° |
O2' | C2' | H2' | 106.4° | 110.8° |
C2' | O2' | P | 120.7° | 106.8° |
C3' | C2' | H2' | 111.8° | 111.0° |
C2' | C3' | O3' | 113.0° | 110.5° |
C2' | C3' | H3' | 112.3° | 110.5° |
O2' | P | O1P | 107.4° | 109.4° |
O2' | P | O2P | 104.5° | 109.5° |
O2' | P | O3P | 107.1° | 109.5° |
O1P | P | O2P | 112.2° | 109.5° |
O1P | P | O3P | 112.9° | 109.5° |
O2P | P | O3P | 112.2° | 109.5° |
P | O2P | H2P | 104.5° | 106.8° |
P | O3P | H3P | 107.2° | 106.8° |
O3' | C3' | H3' | 104.6° | 110.4° |
C3' | O3' | H1 | 110.1° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 117.8° | 120.0° |
O5' | C5' | C4' | O4' | 57.6° | 66.7° |
O5' | C5' | C4' | C3' | 60.2° | 175.3° |
O5' | C5' | C4' | H4' | 179.1° | 54.3° |
H5' | O5' | C5' | C4' | 180.0° | 180.0° |
H5' | O5' | C5' | H5'1 | 54.7° | 60.0° |
H5' | O5' | C5' | H5'2 | 54.8° | 60.0° |
C4' | C5' | H5'1 | H5'2 | 117.7° | 120.0° |
C5' | C4' | O4' | C3' | 124.9° | 119.5° |
C5' | C4' | O4' | H4' | 116.1° | 121.1° |
C5' | C4' | C3' | H4' | 115.9° | 121.0° |
C5' | C4' | O4' | C1' | 144.1° | 145.9° |
C5' | C4' | C3' | C2' | 156.8° | 121.4° |
C5' | C4' | C3' | O3' | 83.0° | 119.9° |
C5' | C4' | C3' | H3' | 34.9° | 2.8° |
H5'1 | C5' | C4' | O4' | 67.6° | 53.3° |
H5'1 | C5' | C4' | C3' | 174.5° | 64.7° |
H5'1 | C5' | C4' | H4' | 55.7° | 174.3° |
H5'2 | C5' | C4' | O4' | 177.1° | 173.3° |
H5'2 | C5' | C4' | C3' | 65.0° | 55.3° |
H5'2 | C5' | C4' | H4' | 53.8° | 65.7° |
O4' | C4' | C3' | H4' | 123.4° | 119.5° |
C4' | O4' | C1' | N1 | 120.0° | 158.7° |
C4' | O4' | C1' | C2' | 5.6° | 40.1° |
C4' | O4' | C1' | H1' | 123.0° | 78.4° |
O4' | C4' | C3' | C2' | 36.1° | 1.9° |
O4' | C4' | C3' | O3' | 156.3° | 120.6° |
O4' | C4' | C3' | H3' | 85.8° | 116.7° |
C3' | C4' | O4' | C1' | 19.3° | 26.4° |
C4' | C3' | C2' | C1' | 38.1° | 21.0° |
C4' | C3' | C2' | O2' | 75.6° | 139.1° |
C4' | C3' | C2' | O3' | 118.2° | 118.9° |
C4' | C3' | C2' | H3' | 123.8° | 118.6° |
C4' | C3' | C2' | H2' | 164.2° | 97.3° |
C4' | C3' | O3' | H3' | 124.1° | 122.7° |
C4' | C3' | O3' | H1 | 180.0° | 65.3° |
H4' | C4' | O4' | C1' | 99.8° | 93.0° |
H4' | C4' | C3' | C2' | 87.3° | 117.6° |
H4' | C4' | C3' | O3' | 33.0° | 1.1° |
H4' | C4' | C3' | H3' | 150.8° | 123.8° |
O4' | C1' | N1 | C2' | 120.2° | 114.1° |
O4' | C1' | N1 | H1' | 122.7° | 122.9° |
O4' | C1' | C2' | H1' | 122.8° | 118.5° |
O4' | C1' | N1 | C6 | 42.3° | 126.5° |
O4' | C1' | N1 | C2 | 136.8° | 53.3° |
O4' | C1' | C2' | O2' | 90.9° | 155.2° |
O4' | C1' | C2' | C3' | 27.7° | 37.1° |
O4' | C1' | C2' | H2' | 149.7° | 81.3° |
N1 | C1' | C2' | H1' | 116.6° | 122.9° |
C1' | N1 | C6 | C2 | 179.1° | 179.8° |
C1' | N1 | C6 | C5 | 177.8° | 180.0° |
C1' | N1 | C6 | H6 | 2.2° | 0.0° |
C1' | N1 | C2 | N3 | 177.6° | 179.7° |
C1' | N1 | C2 | O2 | 2.6° | 0.3° |
N1 | C1' | C2' | O2' | 148.5° | 86.2° |
N1 | C1' | C2' | C3' | 92.9° | 155.6° |
N1 | C1' | C2' | H2' | 29.0° | 37.3° |
C2' | C1' | N1 | C6 | 77.9° | 119.4° |
C2' | C1' | N1 | C2 | 102.9° | 60.8° |
C1' | C2' | O2' | C3' | 110.1° | 112.7° |
C1' | C2' | O2' | H2' | 126.6° | 123.6° |
C1' | C2' | C3' | H2' | 126.1° | 118.3° |
C1' | C2' | O2' | P | 157.0° | 120.0° |
C1' | C2' | C3' | O3' | 156.4° | 97.9° |
C1' | C2' | C3' | H3' | 85.6° | 139.6° |
H1' | C1' | N1 | C6 | 165.1° | 3.6° |
H1' | C1' | N1 | C2 | 14.1° | 176.2° |
H1' | C1' | C2' | O2' | 31.9° | 36.7° |
H1' | C1' | C2' | C3' | 150.5° | 81.4° |
H1' | C1' | C2' | H2' | 87.6° | 160.2° |
N1 | C6 | C5 | H6 | 180.0° | 179.9° |
N1 | C6 | C5 | C4 | 0.1° | 0.1° |
N1 | C6 | C5 | H5 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 1.6° | 0.5° |
C6 | N1 | C2 | O2 | 178.3° | 179.9° |
C2 | N1 | C6 | C5 | 1.3° | 0.2° |
C2 | N1 | C6 | H6 | 178.7° | 179.7° |
N1 | C2 | N3 | C4 | 0.8° | 0.6° |
N1 | C2 | N3 | O2 | 179.9° | 179.4° |
N1 | C2 | N3 | HN3 | 179.2° | 179.8° |
C6 | C5 | C4 | H5 | 180.0° | 179.9° |
C6 | C5 | C4 | O4 | 178.0° | 180.0° |
C6 | C5 | C4 | N3 | 0.7° | 0.0° |
H6 | C6 | C5 | C4 | 180.0° | 180.0° |
H6 | C6 | C5 | H5 | 0.1° | 0.1° |
C5 | C4 | O4 | N3 | 178.7° | 180.0° |
C5 | C4 | N3 | C2 | 0.4° | 0.3° |
C5 | C4 | N3 | HN3 | 179.6° | 180.0° |
H5 | C5 | C4 | O4 | 1.9° | 0.1° |
H5 | C5 | C4 | N3 | 179.3° | 180.0° |
O4 | C4 | N3 | C2 | 178.5° | 179.7° |
O4 | C4 | N3 | HN3 | 1.5° | 0.0° |
C4 | N3 | C2 | HN3 | 180.0° | 179.7° |
C4 | N3 | C2 | O2 | 179.1° | 180.0° |
HN3 | N3 | C2 | O2 | 0.9° | 0.3° |
O2' | C2' | C3' | H2' | 120.2° | 123.6° |
C2' | O2' | P | O1P | 62.1° | 55.0° |
C2' | O2' | P | O2P | 178.7° | 64.9° |
C2' | O2' | P | O3P | 59.5° | 175.0° |
O2' | C2' | C3' | O3' | 42.6° | 20.2° |
O2' | C2' | C3' | H3' | 160.6° | 102.3° |
C3' | C2' | O2' | P | 92.9° | 127.3° |
C2' | C3' | O3' | H3' | 122.4° | 122.5° |
C2' | C3' | O3' | H1 | 66.6° | 180.0° |
H2' | C2' | O2' | P | 30.4° | 3.6° |
H2' | C2' | C3' | O3' | 77.6° | 143.8° |
H2' | C2' | C3' | H3' | 40.4° | 21.3° |
O2' | P | O1P | O2P | 114.2° | 120.0° |
O2' | P | O1P | O3P | 117.9° | 120.0° |
O2' | P | O2P | O3P | 115.7° | 120.0° |
O2' | P | O2P | H2P | 180.0° | 60.0° |
O2' | P | O3P | H3P | 180.0° | 179.9° |
O1P | P | O2P | O3P | 128.3° | 120.0° |
O1P | P | O2P | H2P | 64.1° | 180.0° |
O1P | P | O3P | H3P | 62.0° | 60.0° |
O2P | P | O3P | H3P | 65.9° | 60.0° |
O3P | P | O2P | H2P | 64.3° | 60.0° |
H3' | C3' | O3' | H1 | 55.9° | 57.4° |