U2L
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.62Å | 13.12Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
| P | OP1 | doub | 1.50Å | 1.48Å | |
| P | OP2 | sing | 1.62Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.52Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.07Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.51Å | 1.54Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | CA' | sing | 1.42Å | 1.43Å | |
| C2' | O2' | sing | 1.41Å | 1.43Å | |
| C2' | C1' | sing | 1.52Å | 1.53Å | |
| C2' | H2' | sing | 1.10Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.43Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.05Å | |
| N1 | C2 | sing | 1.41Å | 1.40Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| C2 | O2 | doub | 1.23Å | 1.23Å | |
| C2 | N3 | sing | 1.40Å | 1.39Å | |
| N3 | C4 | sing | 1.39Å | 1.39Å | |
| N3 | H3 | sing | 1.02Å | 1.01Å | |
| C4 | O4 | doub | 1.23Å | 1.23Å | |
| C4 | C5 | sing | 1.49Å | 1.45Å | |
| C5 | C6 | doub | 1.34Å | 1.35Å | |
| C5 | C7 | sing | 1.50Å | 1.50Å | |
| C6 | H6 | sing | 1.09Å | 1.07Å | |
| CA' | CB' | sing | 1.52Å | 1.54Å | |
| CA' | HA'1 | sing | 1.09Å | 1.09Å | |
| CA' | HA'2 | sing | 1.09Å | 1.09Å | |
| CB' | OC' | sing | 1.42Å | 1.42Å | |
| CB' | HB'1 | sing | 1.09Å | 1.09Å | |
| CB' | HB'2 | sing | 1.09Å | 1.09Å | |
| OC' | CD' | sing | 1.42Å | 1.42Å | |
| CD' | HD'1 | sing | 1.09Å | 1.09Å | |
| CD' | HD'2 | sing | 1.09Å | 1.09Å | |
| CD' | HD'3 | sing | 1.09Å | 1.09Å | |
| C7 | H71 | sing | 1.09Å | 1.09Å | |
| C7 | H72 | sing | 1.09Å | 1.09Å | |
| C7 | H73 | sing | 1.09Å | 1.11Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 126.8° | 119.0° |
| OP3 | P | OP1 | 126.9° | 115.3° |
| OP3 | P | OP2 | 44.6° | 103.3° |
| OP3 | P | O5' | 124.9° | 103.8° |
| OP1 | P | OP2 | 119.6° | 114.9° |
| OP1 | P | O5' | 108.1° | 115.0° |
| OP2 | P | O5' | 107.7° | 102.9° |
| P | OP2 | HOP2 | 44.6° | 119.0° |
| P | O5' | C5' | 122.0° | 118.5° |
| O5' | C5' | C4' | 109.2° | 108.6° |
| O5' | C5' | H5' | 110.8° | 109.2° |
| O5' | C5' | H5'' | 109.5° | 109.3° |
| C4' | C5' | H5' | 108.9° | 110.1° |
| C4' | C5' | H5'' | 109.5° | 110.1° |
| C5' | C4' | O4' | 108.2° | 108.2° |
| C5' | C4' | C3' | 115.7° | 113.3° |
| C5' | C4' | H4' | 112.1° | 109.3° |
| H5' | C5' | H5'' | 108.9° | 109.6° |
| O4' | C4' | C3' | 106.8° | 105.9° |
| O4' | C4' | H4' | 112.1° | 107.7° |
| C4' | O4' | C1' | 106.6° | 109.2° |
| C3' | C4' | H4' | 101.9° | 112.2° |
| C4' | C3' | O3' | 110.9° | 107.9° |
| C4' | C3' | C2' | 103.2° | 102.1° |
| C4' | C3' | H3' | 101.2° | 114.5° |
| O4' | C1' | C2' | 109.3° | 106.5° |
| O4' | C1' | N1 | 116.3° | 109.0° |
| O4' | C1' | H1' | 107.3° | 108.9° |
| O3' | C3' | C2' | 119.0° | 110.3° |
| O3' | C3' | H3' | 111.2° | 107.8° |
| C3' | O3' | CA' | 120.1° | 111.3° |
| C2' | C3' | H3' | 109.6° | 114.0° |
| C3' | C2' | O2' | 116.2° | 112.3° |
| C3' | C2' | C1' | 94.4° | 102.0° |
| C3' | C2' | H2' | 117.8° | 110.1° |
| O3' | CA' | CB' | 111.7° | 109.1° |
| O3' | CA' | HA'1 | 111.4° | 108.1° |
| O3' | CA' | HA'2 | 108.7° | 108.3° |
| O2' | C2' | C1' | 107.3° | 112.6° |
| O2' | C2' | H2' | 104.5° | 108.6° |
| C2' | O2' | HO2' | 116.2° | 107.1° |
| C1' | C2' | H2' | 116.4° | 111.1° |
| C2' | C1' | N1 | 122.0° | 112.5° |
| C2' | C1' | H1' | 95.9° | 112.6° |
| N1 | C1' | H1' | 102.6° | 107.3° |
| C1' | N1 | C2 | 116.9° | 121.3° |
| C1' | N1 | C6 | 123.7° | 118.5° |
| C2 | N1 | C6 | 119.4° | 120.2° |
| N1 | C2 | O2 | 123.4° | 123.8° |
| N1 | C2 | N3 | 117.1° | 115.1° |
| N1 | C6 | C5 | 122.5° | 124.5° |
| N1 | C6 | H6 | 124.4° | 114.7° |
| O2 | C2 | N3 | 119.5° | 121.1° |
| C2 | N3 | C4 | 125.9° | 127.0° |
| C2 | N3 | H3 | 117.1° | 116.4° |
| C4 | N3 | H3 | 117.1° | 116.6° |
| N3 | C4 | O4 | 120.1° | 123.6° |
| N3 | C4 | C5 | 113.3° | 114.8° |
| O4 | C4 | C5 | 126.5° | 121.6° |
| C4 | C5 | C6 | 121.8° | 118.4° |
| C4 | C5 | C7 | 123.1° | 118.0° |
| C6 | C5 | C7 | 115.2° | 123.6° |
| C5 | C6 | H6 | 113.1° | 120.7° |
| C5 | C7 | H71 | 111.6° | 109.7° |
| C5 | C7 | H72 | 109.8° | 109.8° |
| C5 | C7 | H73 | 103.2° | 109.7° |
| CB' | CA' | HA'1 | 108.9° | 111.1° |
| CB' | CA' | HA'2 | 107.0° | 110.5° |
| CA' | CB' | OC' | 114.3° | 109.0° |
| CA' | CB' | HB'1 | 107.5° | 111.1° |
| CA' | CB' | HB'2 | 110.0° | 110.5° |
| HA'1 | CA' | HA'2 | 109.1° | 109.6° |
| OC' | CB' | HB'1 | 107.2° | 108.1° |
| OC' | CB' | HB'2 | 110.1° | 108.3° |
| CB' | OC' | CD' | 114.8° | 111.5° |
| HB'1 | CB' | HB'2 | 107.4° | 109.7° |
| OC' | CD' | HD'1 | 110.4° | 109.5° |
| OC' | CD' | HD'2 | 109.0° | 109.5° |
| OC' | CD' | HD'3 | 110.4° | 109.0° |
| HD'1 | CD' | HD'2 | 108.9° | 110.1° |
| HD'1 | CD' | HD'3 | 109.8° | 109.3° |
| HD'2 | CD' | HD'3 | 108.3° | 109.4° |
| H71 | C7 | H72 | 111.5° | 109.4° |
| H71 | C7 | H73 | 113.1° | 109.4° |
| H72 | C7 | H73 | 107.2° | 108.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 53.3° | 120.0° |
| OP3 | P | OP1 | O5' | 176.8° | 120.7° |
| OP3 | P | OP2 | O5' | 122.2° | 107.7° |
| OP3 | P | OP2 | HOP2 | 180.0° | 78.5° |
| OP3 | P | O5' | C5' | 92.3° | 53.2° |
| HOP3 | OP3 | P | OP1 | 180.0° | 48.7° |
| HOP3 | OP3 | P | OP2 | 83.2° | 77.5° |
| HOP3 | OP3 | P | O5' | 3.7° | 175.4° |
| OP1 | P | OP2 | O5' | 123.7° | 125.8° |
| OP1 | P | OP2 | HOP2 | 66.0° | 48.0° |
| OP1 | P | O5' | C5' | 84.6° | 179.9° |
| OP2 | P | O5' | C5' | 45.9° | 54.2° |
| O5' | P | OP2 | HOP2 | 57.7° | 173.8° |
| P | O5' | C5' | C4' | 139.7° | 180.0° |
| P | O5' | C5' | H5' | 19.7° | 59.9° |
| P | O5' | C5' | H5'' | 100.4° | 59.9° |
| O5' | C5' | C4' | H5' | 121.1° | 119.5° |
| O5' | C5' | C4' | H5'' | 119.9° | 119.6° |
| O5' | C5' | H5' | H5'' | 120.5° | 119.6° |
| O5' | C5' | C4' | O4' | 63.2° | 62.4° |
| O5' | C5' | C4' | C3' | 56.5° | 179.5° |
| O5' | C5' | C4' | H4' | 172.7° | 54.6° |
| C4' | C5' | H5' | H5'' | 119.4° | 121.2° |
| C5' | C4' | O4' | C3' | 125.2° | 121.7° |
| C5' | C4' | O4' | H4' | 124.1° | 118.1° |
| C5' | C4' | C3' | H4' | 121.9° | 124.4° |
| C5' | C4' | O4' | C1' | 130.6° | 109.0° |
| C5' | C4' | C3' | O3' | 79.6° | 156.8° |
| C5' | C4' | C3' | C2' | 151.9° | 86.9° |
| C5' | C4' | C3' | H3' | 38.4° | 36.8° |
| H5' | C5' | C4' | O4' | 175.7° | 57.1° |
| H5' | C5' | C4' | C3' | 64.7° | 60.0° |
| H5' | C5' | C4' | H4' | 51.6° | 174.1° |
| H5'' | C5' | C4' | O4' | 56.7° | 178.0° |
| H5'' | C5' | C4' | C3' | 176.3° | 60.9° |
| H5'' | C5' | C4' | H4' | 67.4° | 65.0° |
| O4' | C4' | C3' | H4' | 117.7° | 117.2° |
| O4' | C4' | C3' | O3' | 159.9° | 84.7° |
| O4' | C4' | C3' | C2' | 31.5° | 31.5° |
| O4' | C4' | C3' | H3' | 82.0° | 155.2° |
| C4' | O4' | C1' | C2' | 23.7° | 11.3° |
| C4' | O4' | C1' | N1 | 119.2° | 132.9° |
| C4' | O4' | C1' | H1' | 126.6° | 110.3° |
| C3' | C4' | O4' | C1' | 5.4° | 12.8° |
| C4' | C3' | O3' | C2' | 119.4° | 110.7° |
| C4' | C3' | O3' | H3' | 111.9° | 124.2° |
| C4' | C3' | C2' | H3' | 107.2° | 124.0° |
| C4' | C3' | O3' | CA' | 78.2° | 69.2° |
| C4' | C3' | C2' | O2' | 70.7° | 158.0° |
| C4' | C3' | C2' | C1' | 41.0° | 37.1° |
| C4' | C3' | C2' | H2' | 164.1° | 80.9° |
| H4' | C4' | O4' | C1' | 105.4° | 133.0° |
| H4' | C4' | C3' | O3' | 42.2° | 32.5° |
| H4' | C4' | C3' | C2' | 86.3° | 148.7° |
| H4' | C4' | C3' | H3' | 160.3° | 87.6° |
| O4' | C1' | C2' | C3' | 40.4° | 30.7° |
| O4' | C1' | C2' | O2' | 78.8° | 151.3° |
| O4' | C1' | C2' | N1 | 140.4° | 119.3° |
| O4' | C1' | C2' | H1' | 110.7° | 119.3° |
| O4' | C1' | C2' | H2' | 164.6° | 86.6° |
| O4' | C1' | N1 | H1' | 116.8° | 117.7° |
| O4' | C1' | N1 | C2 | 71.8° | 147.8° |
| O4' | C1' | N1 | C6 | 108.2° | 32.3° |
| O3' | C3' | C2' | H3' | 129.5° | 121.5° |
| O3' | C3' | C2' | O2' | 52.6° | 43.5° |
| O3' | C3' | C2' | C1' | 164.3° | 77.4° |
| O3' | C3' | C2' | H2' | 72.6° | 164.6° |
| C3' | O3' | CA' | CB' | 174.9° | 179.0° |
| C3' | O3' | CA' | HA'1 | 52.9° | 60.0° |
| C3' | O3' | CA' | HA'2 | 67.3° | 58.8° |
| C2' | C3' | O3' | CA' | 41.2° | 180.0° |
| C3' | C2' | O2' | C1' | 104.1° | 114.5° |
| C3' | C2' | O2' | H2' | 131.7° | 122.0° |
| C3' | C2' | C1' | H2' | 124.1° | 117.3° |
| C3' | C2' | O2' | HO2' | 180.0° | 168.8° |
| C3' | C2' | C1' | N1 | 100.0° | 150.0° |
| C3' | C2' | C1' | H1' | 151.2° | 88.5° |
| H3' | C3' | O3' | CA' | 170.0° | 54.9° |
| H3' | C3' | C2' | O2' | 177.9° | 78.0° |
| H3' | C3' | C2' | C1' | 66.2° | 161.1° |
| H3' | C3' | C2' | H2' | 56.9° | 43.1° |
| O3' | CA' | CB' | HA'1 | 123.5° | 119.1° |
| O3' | CA' | CB' | HA'2 | 118.8° | 118.9° |
| O3' | CA' | HA'1 | HA'2 | 120.0° | 117.8° |
| O3' | CA' | CB' | OC' | 77.3° | 60.9° |
| O3' | CA' | CB' | HB'1 | 163.9° | 180.0° |
| O3' | CA' | CB' | HB'2 | 47.2° | 58.0° |
| O2' | C2' | C1' | H2' | 116.7° | 122.1° |
| O2' | C2' | C1' | N1 | 140.8° | 89.4° |
| O2' | C2' | C1' | H1' | 32.0° | 32.1° |
| C1' | C2' | O2' | HO2' | 75.9° | 54.3° |
| C2' | C1' | N1 | H1' | 105.3° | 124.4° |
| C2' | C1' | N1 | C2 | 150.4° | 94.3° |
| C2' | C1' | N1 | C6 | 29.6° | 85.6° |
| H2' | C2' | O2' | HO2' | 48.3° | 69.2° |
| H2' | C2' | C1' | N1 | 24.2° | 32.7° |
| H2' | C2' | C1' | H1' | 84.7° | 154.2° |
| C1' | N1 | C2 | C6 | 180.0° | 179.9° |
| C1' | N1 | C2 | O2 | 0.1° | 0.1° |
| C1' | N1 | C2 | N3 | 179.8° | 180.0° |
| C1' | N1 | C6 | C5 | 179.6° | 180.0° |
| C1' | N1 | C6 | H6 | 0.7° | 0.0° |
| H1' | C1' | N1 | C2 | 45.1° | 30.1° |
| H1' | C1' | N1 | C6 | 135.0° | 150.0° |
| N1 | C2 | O2 | N3 | 179.9° | 179.9° |
| N1 | C2 | N3 | C4 | 0.0° | 0.0° |
| N1 | C2 | N3 | H3 | 180.0° | 179.9° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | H6 | 179.3° | 180.0° |
| C6 | N1 | C2 | O2 | 179.9° | 180.0° |
| C6 | N1 | C2 | N3 | 0.2° | 0.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | H6 | 179.7° | 180.0° |
| N1 | C6 | C5 | C7 | 179.6° | 180.0° |
| O2 | C2 | N3 | C4 | 179.9° | 179.9° |
| O2 | C2 | N3 | H3 | 0.1° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.9° | 179.9° |
| C2 | N3 | C4 | C5 | 0.0° | 0.1° |
| N3 | C4 | O4 | C5 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| N3 | C4 | C5 | C7 | 179.8° | 180.0° |
| H3 | N3 | C4 | O4 | 0.1° | 0.0° |
| H3 | N3 | C4 | C5 | 179.9° | 180.0° |
| O4 | C4 | C5 | C6 | 180.0° | 180.0° |
| O4 | C4 | C5 | C7 | 0.1° | 0.0° |
| C4 | C5 | C6 | C7 | 179.9° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 180.0° |
| C4 | C5 | C7 | H71 | 96.6° | 115.8° |
| C4 | C5 | C7 | H72 | 27.6° | 124.0° |
| C4 | C5 | C7 | H73 | 141.6° | 4.4° |
| C6 | C5 | C7 | H71 | 83.4° | 64.2° |
| C6 | C5 | C7 | H72 | 152.4° | 56.0° |
| C6 | C5 | C7 | H73 | 38.3° | 175.6° |
| C7 | C5 | C6 | H6 | 0.7° | 0.0° |
| C5 | C7 | H71 | H72 | 123.2° | 120.5° |
| C5 | C7 | H71 | H73 | 115.9° | 120.4° |
| C5 | C7 | H72 | H73 | 111.5° | 120.1° |
| CB' | CA' | HA'1 | HA'2 | 116.4° | 122.5° |
| CA' | CB' | OC' | HB'1 | 119.0° | 121.0° |
| CA' | CB' | OC' | HB'2 | 124.4° | 120.2° |
| CA' | CB' | HB'1 | HB'2 | 118.4° | 122.5° |
| CA' | CB' | OC' | CD' | 69.1° | 179.0° |
| HA'1 | CA' | CB' | OC' | 46.2° | 180.0° |
| HA'1 | CA' | CB' | HB'1 | 72.7° | 60.9° |
| HA'1 | CA' | CB' | HB'2 | 170.7° | 61.2° |
| HA'2 | CA' | CB' | OC' | 163.9° | 58.0° |
| HA'2 | CA' | CB' | HB'1 | 45.1° | 61.1° |
| HA'2 | CA' | CB' | HB'2 | 71.6° | 176.9° |
| OC' | CB' | HB'1 | HB'2 | 118.3° | 117.9° |
| CB' | OC' | CD' | HD'1 | 51.5° | 93.0° |
| CB' | OC' | CD' | HD'2 | 171.1° | 146.2° |
| CB' | OC' | CD' | HD'3 | 70.0° | 26.6° |
| HB'1 | CB' | OC' | CD' | 171.9° | 60.0° |
| HB'2 | CB' | OC' | CD' | 55.3° | 58.8° |
| OC' | CD' | HD'1 | HD'2 | 119.6° | 120.4° |
| OC' | CD' | HD'1 | HD'3 | 121.9° | 119.3° |
| OC' | CD' | HD'2 | HD'3 | 120.1° | 119.4° |
| HD'1 | CD' | HD'2 | HD'3 | 119.4° | 120.2° |
| H71 | C7 | H72 | H73 | 124.3° | 119.5° |
