U2F

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.59Å
C1	C2	sing	1.52Å	1.48Å
C1	O5	sing	1.43Å	1.56Å
C1	H1	sing	1.09Å	1.12Å
O1	PB	sing	1.61Å	1.60Å
PB	O1B	doub	1.50Å	1.51Å
PB	O2B	sing	1.62Å	1.51Å
PB	O3A	sing	1.62Å	1.57Å
O3A	PA	sing	1.62Å	1.59Å
PA	O1A	doub	1.50Å	1.43Å
PA	O2A	sing	1.62Å	1.51Å
PA	O5'	sing	1.62Å	1.60Å
O5'	C5'	sing	1.42Å	1.41Å
C5'	C4'	sing	1.52Å	1.53Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.42Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.10Å	1.11Å
O4'	C1'	sing	1.44Å	1.43Å
C1'	C2'	sing	1.52Å	1.49Å
C1'	N1	sing	1.43Å	1.45Å
C1'	H1'	sing	1.10Å	1.11Å
C2'	C3'	sing	1.51Å	1.51Å
C2'	O2'	sing	1.41Å	1.38Å
C2'	H2'	sing	1.10Å	1.11Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HB	sing	0.97Å	0.95Å
O2'	HA	sing	0.97Å	0.95Å
N1	C6'	sing	1.42Å	1.39Å
N1	C9'	sing	1.39Å	1.38Å
C6'	O6'	doub	1.23Å	1.20Å
C6'	N3	sing	1.40Å	1.39Å
N3	C7'	sing	1.39Å	1.36Å
N3	H3	sing	1.02Å	1.02Å
C7'	O7'	doub	1.23Å	1.11Å
C7'	C8'	sing	1.48Å	1.39Å
C8'	C9'	doub	1.34Å	1.40Å
C8'	H8'	sing	1.08Å	1.10Å
C9'	H9'	sing	1.09Å	1.10Å
C2	F1	sing	1.36Å	1.41Å
C2	C3	sing	1.52Å	1.62Å
C2	H2	sing	1.10Å	1.11Å
C3	O3	sing	1.43Å	1.57Å
C3	C4	sing	1.53Å	1.56Å
C3	HC	sing	1.10Å	1.11Å
O3	HD	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.54Å
C4	C5	sing	1.53Å	1.69Å
C4	H4	sing	1.10Å	1.11Å
O4	HE	sing	0.97Å	0.95Å
C5	C6	sing	1.53Å	1.59Å
C5	O5	sing	1.43Å	1.46Å
C5	H5	sing	1.10Å	1.12Å
C6	O6	sing	1.42Å	1.43Å
C6	H6C1	sing	1.09Å	1.12Å
C6	H6C2	sing	1.09Å	1.12Å
O6	H6	sing	0.97Å	0.95Å
HO1	O2A	sing	0.98Å	0.95Å
HO2	O2B	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	129.6°	112.2°
O1	C1	O5	107.4°	112.3°
O1	C1	H1	108.6°	105.7°
C1	O1	PB	126.1°	119.8°
C2	C1	O5	91.4°	110.6°
C2	C1	H1	108.6°	108.6°
C1	C2	F1	109.1°	109.1°
C1	C2	C3	114.3°	112.3°
C1	C2	H2	109.9°	109.8°
O5	C1	H1	108.6°	107.1°
C1	O5	C5	117.4°	113.3°
O1	PB	O1B	107.9°	114.8°
O1	PB	O2B	97.1°	104.9°
O1	PB	O3A	132.4°	103.1°
O1B	PB	O2B	100.1°	114.4°
O1B	PB	O3A	107.8°	114.6°
O2B	PB	O3A	106.4°	103.6°
PB	O2B	HO2	109.5°	118.9°
PB	O3A	PA	126.1°	131.0°
O3A	PA	O1A	109.3°	114.6°
O3A	PA	O2A	104.6°	103.0°
O3A	PA	O5'	107.2°	103.0°
O1A	PA	O2A	115.1°	115.0°
O1A	PA	O5'	106.7°	115.7°
O2A	PA	O5'	113.7°	103.9°
PA	O2A	HO1	109.5°	119.0°
PA	O5'	C5'	116.9°	118.5°
O5'	C5'	C4'	102.9°	109.0°
O5'	C5'	H5'1	114.7°	108.8°
O5'	C5'	H5'2	114.7°	108.8°
C4'	C5'	H5'1	114.7°	110.5°
C4'	C5'	H5'2	114.7°	110.5°
C5'	C4'	O4'	110.5°	108.2°
C5'	C4'	C3'	108.4°	113.3°
C5'	C4'	H4'	110.9°	109.3°
H5'1	C5'	H5'2	95.8°	109.1°
O4'	C4'	C3'	105.1°	105.9°
O4'	C4'	H4'	110.9°	107.7°
C4'	O4'	C1'	108.3°	109.1°
C3'	C4'	H4'	110.9°	112.2°
C4'	C3'	C2'	104.8°	102.1°
C4'	C3'	O3'	110.4°	108.0°
C4'	C3'	H3'	110.2°	114.5°
O4'	C1'	C2'	106.0°	106.6°
O4'	C1'	N1	103.7°	109.0°
O4'	C1'	H1'	110.8°	108.9°
C2'	C1'	N1	114.5°	112.5°
C2'	C1'	H1'	110.8°	112.5°
C1'	C2'	C3'	98.5°	102.0°
C1'	C2'	O2'	111.3°	112.7°
C1'	C2'	H2'	111.3°	111.1°
N1	C1'	H1'	110.7°	107.3°
C1'	N1	C6'	117.5°	121.3°
C1'	N1	C9'	122.1°	118.6°
C3'	C2'	O2'	112.6°	112.3°
C3'	C2'	H2'	111.3°	110.1°
C2'	C3'	O3'	110.8°	110.3°
C2'	C3'	H3'	110.2°	114.0°
O2'	C2'	H2'	111.3°	108.6°
C2'	O2'	HA	112.6°	107.2°
O3'	C3'	H3'	110.3°	107.8°
C3'	O3'	HB	110.4°	106.4°
C6'	N1	C9'	120.4°	120.1°
N1	C6'	O6'	120.7°	123.7°
N1	C6'	N3	119.5°	115.2°
N1	C9'	C8'	118.9°	124.1°
N1	C9'	H9'	120.5°	115.5°
O6'	C6'	N3	119.2°	121.1°
C6'	N3	C7'	120.8°	126.8°
C6'	N3	H3	119.6°	116.6°
C7'	N3	H3	119.6°	116.7°
N3	C7'	O7'	118.0°	124.4°
N3	C7'	C8'	119.5°	114.7°
O7'	C7'	C8'	122.4°	120.9°
C7'	C8'	C9'	120.7°	119.2°
C7'	C8'	H8'	119.7°	118.8°
C9'	C8'	H8'	119.7°	122.0°
C8'	C9'	H9'	120.6°	120.4°
F1	C2	C3	103.6°	109.1°
F1	C2	H2	109.9°	107.2°
C3	C2	H2	109.9°	109.2°
C2	C3	O3	121.4°	107.8°
C2	C3	C4	108.2°	110.4°
C2	C3	HC	105.4°	111.0°
O3	C3	C4	109.7°	109.4°
O3	C3	HC	105.5°	106.8°
C3	O3	HD	121.4°	106.4°
C4	C3	HC	105.5°	111.3°
C3	C4	O4	107.4°	109.5°
C3	C4	C5	108.1°	111.2°
C3	C4	H4	110.1°	109.4°
O4	C4	C5	110.8°	108.9°
O4	C4	H4	110.1°	107.4°
C4	O4	HE	107.4°	106.6°
C5	C4	H4	110.2°	110.4°
C4	C5	C6	107.4°	111.5°
C4	C5	O5	106.5°	111.0°
C4	C5	H5	109.4°	110.4°
C6	C5	O5	114.6°	107.3°
C6	C5	H5	109.4°	107.1°
C5	C6	O6	117.2°	108.5°
C5	C6	H6C1	109.4°	109.9°
C5	C6	H6C2	109.4°	110.0°
O5	C5	H5	109.4°	109.3°
O6	C6	H6C1	109.4°	109.3°
O6	C6	H6C2	109.4°	109.3°
C6	O6	H6	117.3°	107.0°
H6C1	C6	H6C2	100.7°	109.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O5	114.1°	126.3°
O1	C1	C2	H1	135.7°	116.5°
O1	C1	O5	H1	117.3°	115.6°
C1	O1	PB	O1B	133.3°	180.0°
C1	O1	PB	O2B	30.2°	53.6°
C1	O1	PB	O3A	89.7°	54.6°
O1	C1	C2	F1	73.6°	49.0°
O1	C1	C2	C3	41.9°	72.0°
O1	C1	C2	H2	165.9°	166.2°
O1	C1	O5	C5	54.7°	66.5°
C2	C1	O5	H1	110.2°	118.2°
C2	C1	O1	PB	27.4°	118.2°
C1	C2	F1	C3	122.1°	123.0°
C1	C2	F1	H2	120.5°	118.8°
C1	C2	C3	H2	124.0°	122.1°
C1	C2	C3	O3	163.8°	169.3°
C1	C2	C3	C4	68.1°	49.9°
C1	C2	C3	HC	44.3°	74.0°
C2	C1	O5	C5	77.8°	59.7°
O5	C1	O1	PB	134.4°	116.5°
O5	C1	C2	F1	172.3°	175.3°
O5	C1	C2	C3	72.3°	54.2°
O5	C1	C2	H2	51.8°	67.5°
C1	O5	C5	C4	68.3°	60.1°
C1	O5	C5	C6	173.1°	177.7°
C1	O5	C5	H5	49.8°	61.9°
H1	C1	O1	PB	108.3°	0.0°
H1	C1	C2	F1	62.1°	67.5°
H1	C1	C2	C3	177.6°	171.5°
H1	C1	C2	H2	58.4°	49.7°
H1	C1	O5	C5	172.0°	177.9°
O1	PB	O1B	O2B	101.0°	121.4°
O1	PB	O1B	O3A	148.1°	119.1°
O1	PB	O2B	O3A	138.2°	107.8°
O1	PB	O3A	PA	36.8°	174.5°
O1	PB	O2B	HO2	27.0°	172.8°
O1B	PB	O2B	O3A	112.1°	125.5°
O1B	PB	O3A	PA	100.2°	60.1°
O1B	PB	O2B	HO2	82.7°	46.1°
O2B	PB	O3A	PA	153.1°	65.3°
PB	O3A	PA	O1A	67.0°	60.0°
PB	O3A	PA	O2A	169.3°	65.7°
PB	O3A	PA	O5'	48.3°	173.5°
O3A	PB	O2B	HO2	165.2°	79.4°
O3A	PA	O1A	O2A	117.2°	119.1°
O3A	PA	O1A	O5'	115.6°	119.7°
O3A	PA	O2A	O5'	116.6°	107.2°
O3A	PA	O5'	C5'	69.1°	65.8°
O3A	PA	O2A	HO1	42.2°	173.9°
O1A	PA	O2A	O5'	123.5°	127.4°
O1A	PA	O5'	C5'	173.9°	60.0°
O1A	PA	O2A	HO1	77.7°	48.5°
O2A	PA	O5'	C5'	46.0°	173.0°
PA	O5'	C5'	C4'	156.4°	180.0°
PA	O5'	C5'	H5'1	31.2°	59.4°
PA	O5'	C5'	H5'2	78.3°	59.3°
O5'	PA	O2A	HO1	158.9°	78.9°
O5'	C5'	C4'	H5'1	125.3°	119.5°
O5'	C5'	C4'	H5'2	125.3°	119.6°
O5'	C5'	H5'1	H5'2	120.6°	118.5°
O5'	C5'	C4'	O4'	158.3°	177.6°
O5'	C5'	C4'	C3'	87.0°	60.5°
O5'	C5'	C4'	H4'	35.0°	65.4°
C4'	C5'	H5'1	H5'2	120.6°	121.8°
C5'	C4'	O4'	C3'	116.7°	121.8°
C5'	C4'	O4'	H4'	123.4°	118.1°
C5'	C4'	C3'	H4'	122.0°	124.4°
C5'	C4'	O4'	C1'	122.0°	109.0°
C5'	C4'	C3'	C2'	97.4°	86.9°
C5'	C4'	C3'	O3'	143.3°	156.9°
C5'	C4'	C3'	H3'	21.2°	36.8°
H5'1	C5'	C4'	O4'	76.4°	62.9°
H5'1	C5'	C4'	C3'	38.3°	180.0°
H5'1	C5'	C4'	H4'	160.2°	54.1°
H5'2	C5'	C4'	O4'	33.1°	58.0°
H5'2	C5'	C4'	C3'	147.7°	59.1°
H5'2	C5'	C4'	H4'	90.3°	175.0°
O4'	C4'	C3'	H4'	119.8°	117.2°
C4'	O4'	C1'	C2'	30.0°	11.4°
C4'	O4'	C1'	N1	151.0°	132.9°
C4'	O4'	C1'	H1'	90.2°	110.3°
O4'	C4'	C3'	C2'	20.8°	31.5°
O4'	C4'	C3'	O3'	98.5°	84.7°
O4'	C4'	C3'	H3'	139.4°	155.2°
C3'	C4'	O4'	C1'	5.2°	12.8°
C4'	C3'	C2'	C1'	36.8°	37.1°
C4'	C3'	C2'	O3'	119.1°	114.5°
C4'	C3'	C2'	H3'	118.6°	124.0°
C4'	C3'	C2'	O2'	154.2°	158.0°
C4'	C3'	C2'	H2'	80.1°	80.9°
C4'	C3'	O3'	H3'	122.1°	124.2°
C4'	C3'	O3'	HB	180.0°	152.2°
H4'	C4'	O4'	C1'	114.6°	133.0°
H4'	C4'	C3'	C2'	140.6°	148.7°
H4'	C4'	C3'	O3'	21.3°	32.5°
H4'	C4'	C3'	H3'	100.8°	87.6°
O4'	C1'	C2'	N1	113.7°	119.3°
O4'	C1'	C2'	H1'	120.2°	119.3°
O4'	C1'	N1	H1'	118.8°	117.8°
O4'	C1'	C2'	C3'	40.9°	30.7°
O4'	C1'	C2'	O2'	159.2°	151.3°
O4'	C1'	C2'	H2'	76.0°	86.6°
O4'	C1'	N1	C6'	132.8°	147.7°
O4'	C1'	N1	C9'	49.8°	32.2°
C2'	C1'	N1	H1'	126.1°	124.3°
C1'	C2'	C3'	O2'	117.4°	120.9°
C1'	C2'	C3'	H2'	116.9°	118.0°
C1'	C2'	O2'	H2'	124.8°	123.5°
C1'	C2'	C3'	O3'	82.3°	77.4°
C1'	C2'	C3'	H3'	155.4°	161.1°
C1'	C2'	O2'	HA	70.5°	111.2°
C2'	C1'	N1	C6'	112.2°	94.3°
C2'	C1'	N1	C9'	65.3°	85.7°
N1	C1'	C2'	C3'	154.6°	150.1°
N1	C1'	C2'	O2'	87.1°	89.3°
N1	C1'	C2'	H2'	37.7°	32.8°
C1'	N1	C6'	C9'	177.5°	180.0°
C1'	N1	C6'	O6'	6.0°	0.0°
C1'	N1	C6'	N3	177.5°	180.0°
C1'	N1	C9'	C8'	179.7°	179.9°
C1'	N1	C9'	H9'	0.3°	0.0°
H1'	C1'	C2'	C3'	79.3°	88.6°
H1'	C1'	C2'	O2'	39.0°	32.0°
H1'	C1'	C2'	H2'	163.8°	154.1°
H1'	C1'	N1	C6'	13.9°	30.0°
H1'	C1'	N1	C9'	168.6°	150.0°
C3'	C2'	O2'	H2'	125.7°	122.0°
C2'	C3'	O3'	H3'	122.3°	125.1°
C2'	C3'	O3'	HB	64.4°	41.5°
C3'	C2'	O2'	HA	180.0°	134.3°
O2'	C2'	C3'	O3'	35.1°	43.5°
O2'	C2'	C3'	H3'	87.3°	78.0°
H2'	C2'	C3'	O3'	160.8°	164.6°
H2'	C2'	C3'	H3'	38.5°	43.1°
H2'	C2'	O2'	HA	54.2°	12.3°
H3'	C3'	O3'	HB	57.9°	83.6°
N1	C6'	O6'	N3	171.5°	179.9°
N1	C6'	N3	C7'	3.9°	0.0°
N1	C6'	N3	H3	176.1°	180.0°
C6'	N1	C9'	C8'	2.3°	0.1°
C6'	N1	C9'	H9'	177.7°	180.0°
C9'	N1	C6'	O6'	176.5°	180.0°
C9'	N1	C6'	N3	5.1°	0.0°
N1	C9'	C8'	C7'	1.7°	0.1°
N1	C9'	C8'	H9'	180.0°	179.9°
N1	C9'	C8'	H8'	178.3°	180.0°
O6'	C6'	N3	C7'	175.5°	180.0°
O6'	C6'	N3	H3	4.6°	0.1°
C6'	N3	C7'	H3	180.0°	180.0°
C6'	N3	C7'	O7'	176.9°	180.0°
C6'	N3	C7'	C8'	0.1°	0.0°
N3	C7'	O7'	C8'	176.8°	179.9°
N3	C7'	C8'	C9'	2.9°	0.1°
N3	C7'	C8'	H8'	177.1°	180.0°
H3	N3	C7'	O7'	3.1°	0.1°
H3	N3	C7'	C8'	179.9°	180.0°
O7'	C7'	C8'	C9'	179.6°	180.0°
O7'	C7'	C8'	H8'	0.4°	0.1°
C7'	C8'	C9'	H8'	180.0°	179.9°
C7'	C8'	C9'	H9'	178.3°	180.0°
H8'	C8'	C9'	H9'	1.7°	0.1°
F1	C2	C3	H2	117.4°	116.9°
F1	C2	C3	O3	45.2°	69.6°
F1	C2	C3	C4	173.3°	170.9°
F1	C2	C3	HC	74.3°	47.0°
C2	C3	O3	C4	127.4°	120.1°
C2	C3	O3	HC	119.5°	119.4°
C2	C3	C4	HC	112.4°	123.8°
C2	C3	O3	HD	180.0°	20.3°
C2	C3	C4	O4	164.7°	169.9°
C2	C3	C4	C5	45.1°	49.5°
C2	C3	C4	H4	75.3°	72.7°
H2	C2	C3	O3	72.1°	47.3°
H2	C2	C3	C4	55.9°	72.2°
H2	C2	C3	HC	168.4°	163.9°
O3	C3	C4	HC	113.1°	117.8°
O3	C3	C4	O4	60.8°	71.7°
O3	C3	C4	C5	179.6°	167.9°
O3	C3	C4	H4	59.1°	45.7°
C4	C3	O3	HD	52.6°	99.7°
C3	C4	O4	C5	117.9°	121.8°
C3	C4	O4	H4	119.9°	118.7°
C3	C4	C5	H4	120.4°	121.6°
C3	C4	O4	HE	180.0°	69.7°
C3	C4	C5	C6	169.7°	173.9°
C3	C4	C5	O5	46.4°	54.3°
C3	C4	C5	H5	71.7°	67.2°
HC	C3	O3	HD	60.5°	139.7°
HC	C3	C4	O4	52.3°	46.1°
HC	C3	C4	C5	67.3°	74.3°
HC	C3	C4	H4	172.2°	163.5°
O4	C4	C5	H4	122.1°	117.6°
O4	C4	C5	C6	72.9°	65.3°
O4	C4	C5	O5	163.9°	175.0°
O4	C4	C5	H5	45.8°	53.6°
C5	C4	O4	HE	62.1°	52.0°
C4	C5	C6	O5	118.1°	121.8°
C4	C5	C6	H5	118.7°	120.9°
C4	C5	O5	H5	118.1°	122.0°
C4	C5	C6	O6	45.9°	179.6°
C4	C5	C6	H6C1	79.3°	60.1°
C4	C5	C6	H6C2	171.2°	60.9°
H4	C4	O4	HE	60.1°	171.6°
H4	C4	C5	C6	49.3°	52.3°
H4	C4	C5	O5	74.0°	67.4°
H4	C4	C5	H5	167.9°	171.2°
C6	C5	O5	H5	123.3°	115.8°
C5	C6	O6	H6C1	125.3°	119.9°
C5	C6	O6	H6C2	125.3°	119.9°
C5	C6	H6C1	H6C2	115.1°	121.1°
C5	C6	O6	H6	180.0°	79.9°
O5	C5	C6	O6	72.2°	57.7°
O5	C5	C6	H6C1	162.6°	61.8°
O5	C5	C6	H6C2	53.1°	177.3°
H5	C5	C6	O6	164.6°	59.6°
H5	C5	C6	H6C1	39.3°	179.1°
H5	C5	C6	H6C2	70.1°	60.0°
O6	C6	H6C1	H6C2	115.2°	119.9°
H6C1	C6	O6	H6	54.8°	40.0°
H6C2	C6	O6	H6	54.7°	160.2°

Definition date:	2003-10-20
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1UQT