U23
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | sing | 1.35Å | 1.36Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
N1 | C1' | sing | 1.46Å | 1.48Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2 | N3 | sing | 1.35Å | 1.36Å | |
N3 | C4 | sing | 1.35Å | 1.37Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | C5 | sing | 1.42Å | 1.41Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C1' | C2' | sing | 1.54Å | 1.53Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
C2' | C3' | sing | 1.55Å | 1.52Å | |
C2' | O2' | sing | 1.45Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C4' | sing | 1.55Å | 1.52Å | |
O3' | P2 | sing | 1.63Å | 1.45Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C5' | sing | 1.53Å | 1.50Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
O5' | P | sing | 1.61Å | 1.58Å | |
O2' | P2 | sing | 1.63Å | 1.43Å | |
OP1 | P | doub | 1.48Å | 1.47Å | |
OP2 | P | sing | 1.61Å | 1.46Å | |
OP5 | P2 | doub | 1.48Å | 1.46Å | |
OP4 | P2 | sing | 1.61Å | 1.47Å | |
N3 | H1 | sing | 0.97Å | 1.00Å | |
C5 | H2 | sing | 1.08Å | 1.08Å | |
C6 | H3 | sing | 1.08Å | 1.08Å | |
C1' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C5' | H6 | sing | 1.09Å | 1.10Å | |
C5' | H7 | sing | 1.09Å | 1.10Å | |
OP2 | H9 | sing | 0.97Å | 0.95Å | |
OP4 | H11 | sing | 0.97Å | 0.95Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
C2' | H12 | sing | 1.09Å | 1.10Å | |
C3' | H13 | sing | 1.09Å | 1.10Å | |
OP3 | H8 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C6 | 121.4° | 120.6° |
C2 | N1 | C1' | 119.0° | 119.7° |
N1 | C2 | O2 | 119.8° | 119.6° |
N1 | C2 | N3 | 120.5° | 120.9° |
C6 | N1 | C1' | 119.6° | 119.7° |
N1 | C6 | C5 | 120.1° | 119.7° |
N1 | C6 | H3 | 120.0° | 120.2° |
N1 | C1' | C2' | 110.0° | 109.9° |
N1 | C1' | O4' | 110.3° | 109.9° |
N1 | C1' | H4 | 109.9° | 109.8° |
O2 | C2 | N3 | 119.7° | 119.5° |
C2 | N3 | C4 | 118.3° | 120.3° |
C2 | N3 | H1 | 120.8° | 119.9° |
N3 | C4 | O4 | 119.4° | 120.4° |
N3 | C4 | C5 | 121.2° | 119.3° |
C4 | N3 | H1 | 120.9° | 119.8° |
O4 | C4 | C5 | 119.4° | 120.3° |
C4 | C5 | C6 | 118.5° | 119.1° |
C4 | C5 | H2 | 120.7° | 120.4° |
C6 | C5 | H2 | 120.8° | 120.5° |
C5 | C6 | H3 | 120.0° | 120.1° |
C2' | C1' | O4' | 106.6° | 107.4° |
C1' | C2' | C3' | 105.1° | 103.9° |
C1' | C2' | O2' | 111.8° | 107.8° |
C2' | C1' | H4 | 109.2° | 109.9° |
C1' | C2' | H12 | 110.3° | 112.3° |
C1' | O4' | C4' | 106.2° | 107.0° |
O4' | C1' | H4 | 110.9° | 110.0° |
C3' | C2' | O2' | 106.7° | 107.3° |
C2' | C3' | O3' | 106.5° | 110.2° |
C2' | C3' | C4' | 103.9° | 102.4° |
C3' | C2' | H12 | 110.5° | 112.3° |
C2' | C3' | H13 | 111.2° | 111.2° |
C2' | O2' | P2 | 105.4° | 101.8° |
O2' | C2' | H12 | 112.1° | 112.7° |
O3' | C3' | C4' | 110.8° | 109.8° |
C3' | O3' | P2 | 105.8° | 105.1° |
O3' | C3' | H13 | 112.7° | 111.2° |
C3' | C4' | O4' | 105.3° | 103.5° |
C3' | C4' | C5' | 110.9° | 110.6° |
C3' | C4' | H5 | 109.7° | 110.6° |
C4' | C3' | H13 | 111.3° | 111.7° |
O3' | P2 | O2' | 108.6° | 102.2° |
O3' | P2 | OP5 | 109.2° | 110.9° |
O3' | P2 | OP4 | 109.8° | 110.9° |
O4' | C4' | C5' | 110.4° | 110.6° |
O4' | C4' | H5 | 110.6° | 110.6° |
C4' | C5' | O5' | 109.3° | 109.5° |
C5' | C4' | H5 | 109.9° | 110.7° |
C4' | C5' | H6 | 109.5° | 109.4° |
C4' | C5' | H7 | 109.5° | 109.4° |
C5' | O5' | P | 118.3° | 123.0° |
O5' | C5' | H6 | 109.5° | 109.5° |
O5' | C5' | H7 | 109.5° | 109.5° |
O5' | P | OP1 | 110.9° | 109.5° |
O5' | P | OP2 | 111.2° | 109.5° |
O5' | P | OP3 | 104.6° | 109.5° |
O2' | P2 | OP5 | 109.8° | 110.9° |
O2' | P2 | OP4 | 109.5° | 110.9° |
OP1 | P | OP2 | 111.4° | 109.5° |
OP1 | P | OP3 | 109.3° | 109.5° |
P | OP2 | H9 | 109.5° | 114.0° |
OP2 | P | OP3 | 109.3° | 109.5° |
OP5 | P2 | OP4 | 109.9° | 110.8° |
P2 | OP4 | H11 | 109.5° | 114.0° |
H6 | C5' | H7 | 109.5° | 109.5° |
P | OP3 | H8 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | N1 | C6 | C1' | 179.9° | 179.8° |
N1 | C2 | O2 | N3 | 180.0° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 0.0° |
C2 | N1 | C6 | C5 | 0.1° | 0.1° |
C2 | N1 | C1' | C2' | 79.6° | 115.0° |
C2 | N1 | C1' | O4' | 163.1° | 127.1° |
N1 | C2 | N3 | H1 | 179.9° | 179.9° |
C2 | N1 | C6 | H3 | 179.9° | 180.0° |
C2 | N1 | C1' | H4 | 40.6° | 6.0° |
C6 | N1 | C2 | O2 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.0° |
N1 | C6 | C5 | H3 | 180.0° | 179.9° |
C6 | N1 | C1' | C2' | 100.3° | 65.2° |
C6 | N1 | C1' | O4' | 17.0° | 52.7° |
N1 | C6 | C5 | H2 | 179.9° | 180.0° |
C6 | N1 | C1' | H4 | 139.5° | 173.8° |
C1' | N1 | C2 | O2 | 0.0° | 0.3° |
C1' | N1 | C2 | N3 | 180.0° | 179.8° |
C1' | N1 | C6 | C5 | 180.0° | 179.7° |
N1 | C1' | C2' | O4' | 119.6° | 119.5° |
N1 | C1' | C2' | H4 | 120.6° | 121.0° |
N1 | C1' | O4' | H4 | 121.9° | 121.0° |
N1 | C1' | C2' | C3' | 133.3° | 121.5° |
N1 | C1' | C2' | O2' | 111.3° | 124.8° |
N1 | C1' | O4' | C4' | 150.9° | 145.9° |
C1' | N1 | C6 | H3 | 0.0° | 0.2° |
N1 | C1' | C2' | H12 | 14.1° | 0.1° |
O2 | C2 | N3 | C4 | 180.0° | 180.0° |
O2 | C2 | N3 | H1 | 0.1° | 0.1° |
C2 | N3 | C4 | H1 | 180.0° | 180.0° |
C2 | N3 | C4 | O4 | 180.0° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.1° |
N3 | C4 | O4 | C5 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.0° | 0.0° |
N3 | C4 | C5 | H2 | 180.0° | 180.0° |
O4 | C4 | C5 | C6 | 179.9° | 180.0° |
O4 | C4 | N3 | H1 | 0.1° | 0.1° |
O4 | C4 | C5 | H2 | 0.1° | 0.0° |
C4 | C5 | C6 | H2 | 180.0° | 180.0° |
C5 | C4 | N3 | H1 | 180.0° | 179.9° |
C4 | C5 | C6 | H3 | 179.9° | 179.9° |
C2' | C1' | O4' | H4 | 118.7° | 119.5° |
C1' | C2' | C3' | O2' | 118.8° | 114.0° |
C1' | C2' | C3' | H12 | 119.0° | 121.6° |
C1' | C2' | O2' | H12 | 124.5° | 124.4° |
C1' | C2' | C3' | O3' | 125.5° | 137.6° |
C1' | C2' | C3' | C4' | 8.4° | 20.8° |
C2' | C1' | O4' | C4' | 31.5° | 26.4° |
C1' | C2' | O2' | P2 | 134.9° | 146.7° |
C1' | C2' | C3' | H13 | 111.3° | 98.6° |
O4' | C1' | C2' | C3' | 13.7° | 2.0° |
O4' | C1' | C2' | O2' | 129.1° | 115.7° |
C1' | O4' | C4' | C3' | 37.2° | 39.9° |
C1' | O4' | C4' | C5' | 156.9° | 158.4° |
C1' | O4' | C4' | H5 | 81.2° | 78.6° |
O4' | C1' | C2' | H12 | 105.4° | 119.6° |
C3' | C2' | O2' | H12 | 121.1° | 124.2° |
C2' | C3' | O3' | C4' | 112.4° | 112.0° |
C2' | C3' | O3' | H13 | 122.2° | 123.8° |
C2' | C3' | C4' | H13 | 119.7° | 119.1° |
C2' | C3' | O3' | P2 | 9.8° | 0.3° |
C2' | C3' | C4' | O4' | 27.2° | 36.9° |
C2' | C3' | C4' | C5' | 146.6° | 155.5° |
C3' | C2' | O2' | P2 | 20.5° | 35.3° |
C3' | C2' | C1' | H4 | 106.1° | 117.5° |
C2' | C3' | C4' | H5 | 91.8° | 81.6° |
O2' | C2' | C3' | O3' | 6.6° | 23.6° |
O2' | C2' | C3' | C4' | 110.4° | 93.2° |
C2' | O2' | P2 | O3' | 27.5° | 34.4° |
C2' | O2' | P2 | OP5 | 146.8° | 152.6° |
C2' | O2' | P2 | OP4 | 92.4° | 83.8° |
O2' | C2' | C1' | H4 | 9.3° | 3.8° |
O2' | C2' | C3' | H13 | 129.8° | 147.4° |
O3' | C3' | C4' | H13 | 126.2° | 123.8° |
O3' | C3' | C4' | O4' | 141.3° | 154.0° |
O3' | C3' | C4' | C5' | 99.3° | 87.5° |
C3' | O3' | P2 | O2' | 23.3° | 20.8° |
C3' | O3' | P2 | OP5 | 143.0° | 139.1° |
C3' | O3' | P2 | OP4 | 96.4° | 97.4° |
O3' | C3' | C4' | H5 | 22.3° | 35.5° |
O3' | C3' | C2' | H12 | 115.5° | 100.8° |
C4' | C3' | O3' | P2 | 122.2° | 112.4° |
C3' | C4' | O4' | C5' | 119.7° | 118.5° |
C3' | C4' | O4' | H5 | 118.4° | 118.5° |
C3' | C4' | C5' | H5 | 121.5° | 122.9° |
C3' | C4' | C5' | O5' | 80.1° | 175.0° |
C3' | C4' | C5' | H6 | 159.9° | 55.0° |
C3' | C4' | C5' | H7 | 39.9° | 65.0° |
C4' | C3' | C2' | H12 | 127.5° | 142.4° |
O3' | P2 | O2' | OP5 | 119.3° | 118.2° |
O3' | P2 | O2' | OP4 | 119.9° | 118.2° |
O3' | P2 | OP5 | OP4 | 120.5° | 123.6° |
O3' | P2 | OP4 | H11 | 120.1° | 180.0° |
P2 | O3' | C3' | H13 | 112.4° | 123.5° |
O4' | C4' | C5' | H5 | 122.2° | 123.0° |
O4' | C4' | C5' | O5' | 36.2° | 70.9° |
C4' | O4' | C1' | H4 | 87.2° | 93.1° |
O4' | C4' | C5' | H6 | 83.8° | 169.0° |
O4' | C4' | C5' | H7 | 156.1° | 49.1° |
O4' | C4' | C3' | H13 | 92.5° | 82.2° |
C4' | C5' | O5' | H6 | 120.0° | 120.0° |
C4' | C5' | O5' | H7 | 120.0° | 120.0° |
C4' | C5' | O5' | P | 153.7° | 180.0° |
C4' | C5' | H6 | H7 | 120.1° | 119.9° |
C5' | C4' | C3' | H13 | 26.9° | 36.4° |
C5' | O5' | P | OP1 | 55.0° | 55.0° |
C5' | O5' | P | OP2 | 179.5° | 175.0° |
O5' | C5' | C4' | H5 | 158.4° | 52.0° |
O5' | C5' | H6 | H7 | 120.1° | 120.1° |
C5' | O5' | P | OP3 | 62.7° | 65.1° |
O5' | P | OP1 | OP2 | 124.4° | 120.0° |
O5' | P | OP1 | OP3 | 114.8° | 120.0° |
O5' | P | OP2 | OP3 | 114.9° | 120.0° |
P | O5' | C5' | H6 | 33.7° | 60.1° |
P | O5' | C5' | H7 | 86.3° | 60.0° |
O5' | P | OP2 | H9 | 124.3° | 180.0° |
O5' | P | OP3 | H8 | 118.8° | 59.9° |
O2' | P2 | OP5 | OP4 | 120.5° | 123.6° |
O2' | P2 | OP4 | H11 | 120.7° | 67.2° |
P2 | O2' | C2' | H12 | 100.6° | 88.9° |
OP1 | P | OP2 | OP3 | 120.8° | 120.0° |
OP1 | P | OP2 | H9 | 0.0° | 60.0° |
OP1 | P | OP3 | H8 | 0.0° | 180.0° |
OP2 | P | OP3 | H8 | 122.1° | 60.0° |
OP5 | P2 | OP4 | H11 | 0.0° | 56.4° |
H2 | C5 | C6 | H3 | 0.1° | 0.1° |
H4 | C1' | C2' | H12 | 134.8° | 120.8° |
H5 | C4' | C5' | H6 | 38.4° | 68.0° |
H5 | C4' | C5' | H7 | 81.6° | 172.1° |
H5 | C4' | C3' | H13 | 148.5° | 159.3° |
H9 | OP2 | P | OP3 | 120.8° | 60.0° |
H12 | C2' | C3' | H13 | 7.7° | 23.0° |