U1P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1P | P | doub | 1.48Å | 1.51Å | |
| O2P | P | sing | 1.61Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.63Å | |
| P | O3P | sing | 1.61Å | 1.47Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å | |
| C2 | N1 | sing | 1.34Å | 1.40Å | |
| C6 | N1 | sing | 1.38Å | 1.38Å | |
| N1 | C1' | sing | 1.47Å | 1.47Å | |
| N3 | C2 | sing | 1.35Å | 1.34Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C4 | N3 | sing | 1.35Å | 1.34Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.37Å | |
| C5 | C6 | doub | 1.36Å | 1.39Å | |
| C6 | C7 | sing | 1.48Å | 1.41Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N8 | C7 | doub | 1.29Å | 1.35Å | |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| N8 | HN8 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 113.0° | 109.5° |
| O1P | P | O5' | 106.5° | 109.4° |
| O1P | P | O3P | 112.0° | 109.5° |
| O2P | P | O5' | 108.2° | 109.5° |
| O2P | P | O3P | 114.0° | 109.5° |
| P | O2P | HO2P | 109.5° | 114.0° |
| O5' | P | O3P | 102.2° | 109.5° |
| P | O5' | C5' | 121.5° | 123.0° |
| P | O3P | HO3P | 109.5° | 114.0° |
| C2 | N1 | C6 | 116.5° | 120.5° |
| C2 | N1 | C1' | 122.8° | 119.8° |
| N1 | C2 | N3 | 123.7° | 121.2° |
| N1 | C2 | O2 | 116.5° | 119.4° |
| C6 | N1 | C1' | 120.4° | 119.7° |
| N1 | C6 | C5 | 119.5° | 119.4° |
| N1 | C6 | C7 | 120.1° | 120.3° |
| N1 | C1' | C2' | 112.3° | 110.3° |
| N1 | C1' | O4' | 107.5° | 110.3° |
| N1 | C1' | H1' | 108.4° | 110.4° |
| N3 | C2 | O2 | 119.6° | 119.4° |
| C2 | N3 | C4 | 118.9° | 120.5° |
| C2 | N3 | HN3 | 120.6° | 119.7° |
| C4 | N3 | HN3 | 120.5° | 119.8° |
| N3 | C4 | O4 | 116.2° | 120.3° |
| N3 | C4 | C5 | 120.5° | 119.5° |
| O4 | C4 | C5 | 123.0° | 120.3° |
| C4 | C5 | C6 | 120.7° | 119.0° |
| C4 | C5 | H5 | 119.7° | 120.5° |
| C5 | C6 | C7 | 120.0° | 120.3° |
| C6 | C5 | H5 | 119.6° | 120.5° |
| C6 | C7 | N8 | 116.7° | 120.0° |
| C6 | C7 | H7 | 121.7° | 120.0° |
| O5' | C5' | C4' | 103.2° | 109.5° |
| O5' | C5' | H5' | 111.6° | 109.4° |
| O5' | C5' | H5'A | 113.0° | 109.5° |
| C4' | C5' | H5' | 111.6° | 109.5° |
| C4' | C5' | H5'A | 112.9° | 109.5° |
| C5' | C4' | O4' | 107.9° | 110.3° |
| C5' | C4' | C3' | 106.1° | 110.3° |
| C5' | C4' | H4' | 112.1° | 110.3° |
| H5' | C5' | H5'A | 104.7° | 109.5° |
| O4' | C4' | C3' | 107.8° | 104.8° |
| O4' | C4' | H4' | 110.5° | 110.5° |
| C4' | O4' | C1' | 110.4° | 105.2° |
| C3' | C4' | H4' | 112.1° | 110.4° |
| C4' | C3' | C2' | 108.0° | 104.0° |
| C4' | C3' | O3' | 113.5° | 110.5° |
| C4' | C3' | H3' | 108.9° | 110.5° |
| C2' | C3' | O3' | 112.5° | 110.6° |
| C2' | C3' | H3' | 110.0° | 110.5° |
| C3' | C2' | C1' | 104.4° | 104.1° |
| C3' | C2' | O2' | 110.8° | 110.4° |
| C3' | C2' | H2' | 112.8° | 110.6° |
| O3' | C3' | H3' | 104.0° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C1' | C2' | O2' | 112.0° | 110.5° |
| C1' | C2' | H2' | 111.6° | 110.7° |
| C2' | C1' | O4' | 107.8° | 104.8° |
| C2' | C1' | H1' | 108.1° | 110.5° |
| O2' | C2' | H2' | 105.3° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O4' | C1' | H1' | 112.8° | 110.4° |
| N8 | C7 | H7 | 121.7° | 120.0° |
| C7 | N8 | HN8 | 108.8° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O5' | 117.6° | 119.9° |
| O1P | P | O2P | O3P | 129.4° | 120.0° |
| O1P | P | O5' | O3P | 117.6° | 120.0° |
| O1P | P | O2P | HO2P | 176.3° | 180.0° |
| O1P | P | O3P | HO3P | 72.9° | 60.0° |
| O1P | P | O5' | C5' | 66.4° | 55.0° |
| O2P | P | O5' | O3P | 120.6° | 120.0° |
| O2P | P | O3P | HO3P | 57.0° | 60.0° |
| O2P | P | O5' | C5' | 55.4° | 64.9° |
| O5' | P | O2P | HO2P | 58.7° | 60.1° |
| O5' | P | O3P | HO3P | 173.5° | 179.9° |
| P | O5' | C5' | C4' | 169.6° | 180.0° |
| P | O5' | C5' | H5' | 70.4° | 60.0° |
| P | O5' | C5' | H5'A | 47.4° | 60.0° |
| O3P | P | O2P | HO2P | 54.2° | 60.0° |
| O3P | P | O5' | C5' | 176.0° | 175.0° |
| C2 | N1 | C6 | C1' | 174.1° | 179.7° |
| N1 | C2 | N3 | O2 | 174.6° | 180.0° |
| N1 | C2 | N3 | C4 | 5.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 174.9° | 179.9° |
| C2 | N1 | C6 | C5 | 2.1° | 0.6° |
| C2 | N1 | C6 | C7 | 175.9° | 179.7° |
| C2 | N1 | C1' | C2' | 52.7° | 65.7° |
| C2 | N1 | C1' | O4' | 65.7° | 49.6° |
| C2 | N1 | C1' | H1' | 172.0° | 171.9° |
| C6 | N1 | C2 | N3 | 3.7° | 0.3° |
| C6 | N1 | C2 | O2 | 178.5° | 179.7° |
| N1 | C6 | C5 | C4 | 2.1° | 0.6° |
| N1 | C6 | C5 | C7 | 173.8° | 179.7° |
| N1 | C6 | C5 | H5 | 177.9° | 179.7° |
| C6 | N1 | C1' | C2' | 121.0° | 114.0° |
| C6 | N1 | C1' | O4' | 120.6° | 130.7° |
| C6 | N1 | C1' | H1' | 1.6° | 8.4° |
| N1 | C6 | C7 | N8 | 62.7° | 174.9° |
| N1 | C6 | C7 | H7 | 117.3° | 5.0° |
| C1' | N1 | C2 | N3 | 177.6° | 179.9° |
| C1' | N1 | C2 | O2 | 7.6° | 0.0° |
| C1' | N1 | C6 | C5 | 176.2° | 179.8° |
| C1' | N1 | C6 | C7 | 10.0° | 0.1° |
| N1 | C1' | O4' | C4' | 134.5° | 159.4° |
| N1 | C1' | C2' | C3' | 126.8° | 142.8° |
| N1 | C1' | C2' | O4' | 118.2° | 118.8° |
| N1 | C1' | C2' | H1' | 119.5° | 122.3° |
| N1 | C1' | C2' | O2' | 113.2° | 98.6° |
| N1 | C1' | C2' | H2' | 4.6° | 24.0° |
| N1 | C1' | O4' | H1' | 119.5° | 122.2° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.2° | 180.0° |
| C2 | N3 | C4 | C5 | 4.8° | 0.0° |
| O2 | C2 | N3 | C4 | 179.7° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.3° | 0.1° |
| N3 | C4 | O4 | C5 | 174.3° | 180.0° |
| N3 | C4 | C5 | C6 | 3.5° | 0.3° |
| N3 | C4 | C5 | H5 | 176.5° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.7° | 0.1° |
| HN3 | N3 | C4 | C5 | 175.2° | 179.9° |
| O4 | C4 | C5 | C6 | 177.5° | 179.7° |
| O4 | C4 | C5 | H5 | 2.5° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | C7 | 175.9° | 179.7° |
| C5 | C6 | C7 | N8 | 111.1° | 5.4° |
| C5 | C6 | C7 | H7 | 68.9° | 174.7° |
| C7 | C6 | C5 | H5 | 4.1° | 0.0° |
| C6 | C7 | N8 | H7 | 180.0° | 179.9° |
| C6 | C7 | N8 | HN8 | 180.0° | 180.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'A | 122.3° | 120.0° |
| O5' | C5' | H5' | H5'A | 122.6° | 120.0° |
| O5' | C5' | C4' | O4' | 177.0° | 69.6° |
| O5' | C5' | C4' | C3' | 67.7° | 175.0° |
| O5' | C5' | C4' | H4' | 55.1° | 52.8° |
| C4' | C5' | H5' | H5'A | 122.5° | 120.0° |
| C5' | C4' | O4' | C3' | 114.2° | 118.8° |
| C5' | C4' | O4' | H4' | 122.9° | 122.3° |
| C5' | C4' | C3' | H4' | 122.7° | 122.2° |
| C5' | C4' | C3' | C2' | 121.9° | 142.8° |
| C5' | C4' | C3' | O3' | 112.8° | 98.5° |
| C5' | C4' | C3' | H3' | 2.5° | 24.2° |
| C5' | C4' | O4' | C1' | 126.6° | 159.4° |
| H5' | C5' | C4' | O4' | 57.0° | 50.3° |
| H5' | C5' | C4' | C3' | 172.3° | 65.0° |
| H5' | C5' | C4' | H4' | 64.9° | 172.7° |
| H5'A | C5' | C4' | O4' | 60.7° | 170.3° |
| H5'A | C5' | C4' | C3' | 54.6° | 55.0° |
| H5'A | C5' | C4' | H4' | 177.4° | 67.3° |
| O4' | C4' | C3' | H4' | 121.9° | 119.0° |
| O4' | C4' | C3' | C2' | 6.5° | 24.0° |
| O4' | C4' | C3' | O3' | 131.9° | 142.7° |
| O4' | C4' | C3' | H3' | 112.9° | 94.6° |
| C4' | O4' | C1' | C2' | 13.2° | 40.6° |
| C4' | O4' | C1' | H1' | 106.1° | 78.4° |
| C4' | C3' | C2' | O3' | 126.0° | 118.7° |
| C4' | C3' | C2' | H3' | 118.7° | 118.6° |
| C4' | C3' | O3' | H3' | 118.2° | 122.7° |
| C4' | C3' | O3' | HO3' | 22.2° | 180.0° |
| C4' | C3' | C2' | C1' | 1.3° | 0.1° |
| C4' | C3' | C2' | O2' | 122.0° | 118.6° |
| C4' | C3' | C2' | H2' | 120.1° | 118.8° |
| C3' | C4' | O4' | C1' | 12.4° | 40.6° |
| H4' | C4' | C3' | C2' | 115.4° | 95.0° |
| H4' | C4' | C3' | O3' | 9.9° | 23.7° |
| H4' | C4' | C3' | H3' | 125.2° | 146.4° |
| H4' | C4' | O4' | C1' | 110.5° | 78.3° |
| C2' | C3' | O3' | H3' | 118.9° | 122.7° |
| C2' | C3' | O3' | HO3' | 145.1° | 65.4° |
| C3' | C2' | C1' | O2' | 120.0° | 118.5° |
| C3' | C2' | C1' | H2' | 122.2° | 118.8° |
| C3' | C2' | O2' | H2' | 122.3° | 122.6° |
| C3' | C2' | O2' | HO2' | 51.5° | 61.5° |
| C3' | C2' | C1' | O4' | 8.6° | 24.1° |
| C3' | C2' | C1' | H1' | 113.7° | 94.8° |
| O3' | C3' | C2' | C1' | 124.7° | 118.6° |
| O3' | C3' | C2' | O2' | 4.0° | 0.0° |
| O3' | C3' | C2' | H2' | 113.9° | 122.6° |
| H3' | C3' | O3' | HO3' | 96.0° | 57.3° |
| H3' | C3' | C2' | C1' | 119.9° | 118.6° |
| H3' | C3' | C2' | O2' | 119.3° | 122.8° |
| H3' | C3' | C2' | H2' | 1.5° | 0.2° |
| C1' | C2' | O2' | H2' | 121.6° | 122.8° |
| C1' | C2' | O2' | HO2' | 167.6° | 176.1° |
| C2' | C1' | O4' | H1' | 119.3° | 119.0° |
| O2' | C2' | C1' | O4' | 128.5° | 142.6° |
| O2' | C2' | C1' | H1' | 6.3° | 23.7° |
| H2' | C2' | O2' | HO2' | 70.9° | 61.2° |
| H2' | C2' | C1' | O4' | 113.6° | 94.7° |
| H2' | C2' | C1' | H1' | 124.2° | 146.4° |
| H7 | C7 | N8 | HN8 | 0.0° | 0.1° |
