U
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.59Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.47Å | |
| P | OP2 | sing | 1.61Å | 1.46Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.40Å | |
| C2' | C1' | sing | 1.54Å | 1.47Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.20Å | |
| C2 | N3 | sing | 1.35Å | 1.35Å | |
| N3 | C4 | sing | 1.35Å | 1.40Å | |
| N3 | H3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C4 | C5 | sing | 1.41Å | 1.42Å | |
| C5 | C6 | doub | 1.35Å | 1.31Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 106.2° | 106.8° |
| OP3 | P | OP1 | 106.2° | 109.5° |
| OP3 | P | OP2 | 110.7° | 109.4° |
| OP3 | P | O5' | 104.6° | 109.5° |
| OP1 | P | OP2 | 117.8° | 109.5° |
| OP1 | P | O5' | 110.9° | 109.5° |
| OP2 | P | O5' | 105.9° | 109.5° |
| P | OP2 | HOP2 | 117.8° | 106.8° |
| P | O5' | C5' | 119.3° | 106.8° |
| O5' | C5' | C4' | 106.7° | 109.5° |
| O5' | C5' | H5' | 113.3° | 109.4° |
| O5' | C5' | H5'' | 113.2° | 109.5° |
| C4' | C5' | H5' | 113.3° | 109.5° |
| C4' | C5' | H5'' | 113.2° | 109.5° |
| C5' | C4' | O4' | 111.1° | 110.4° |
| C5' | C4' | C3' | 117.5° | 110.7° |
| C5' | C4' | H4' | 100.3° | 110.4° |
| H5' | C5' | H5'' | 97.2° | 109.5° |
| O4' | C4' | C3' | 100.2° | 104.7° |
| O4' | C4' | H4' | 117.5° | 110.4° |
| C4' | O4' | C1' | 109.6° | 105.3° |
| C3' | C4' | H4' | 111.2° | 110.2° |
| C4' | C3' | O3' | 109.6° | 110.5° |
| C4' | C3' | C2' | 101.3° | 104.2° |
| C4' | C3' | H3' | 117.0° | 110.5° |
| O4' | C1' | C2' | 106.0° | 104.8° |
| O4' | C1' | N1 | 108.8° | 110.4° |
| O4' | C1' | H1' | 113.3° | 110.4° |
| O3' | C3' | C2' | 115.8° | 110.5° |
| O3' | C3' | H3' | 102.9° | 110.4° |
| C3' | O3' | HO3' | 109.6° | 106.8° |
| C2' | C3' | H3' | 111.0° | 110.5° |
| C3' | C2' | O2' | 108.3° | 110.5° |
| C3' | C2' | C1' | 100.4° | 104.1° |
| C3' | C2' | H2' | 116.8° | 110.6° |
| O2' | C2' | C1' | 112.2° | 110.6° |
| O2' | C2' | H2' | 105.9° | 110.4° |
| C2' | O2' | HO2' | 108.3° | 106.8° |
| C1' | C2' | H2' | 113.2° | 110.5° |
| C2' | C1' | N1 | 112.7° | 110.4° |
| C2' | C1' | H1' | 109.4° | 110.4° |
| N1 | C1' | H1' | 106.7° | 110.4° |
| C1' | N1 | C2 | 115.7° | 119.7° |
| C1' | N1 | C6 | 126.4° | 119.6° |
| C2 | N1 | C6 | 117.9° | 120.7° |
| N1 | C2 | O2 | 119.6° | 119.6° |
| N1 | C2 | N3 | 115.4° | 120.9° |
| N1 | C6 | C5 | 125.8° | 119.6° |
| N1 | C6 | H6 | 120.1° | 120.2° |
| O2 | C2 | N3 | 125.1° | 119.5° |
| C2 | N3 | C4 | 127.5° | 120.3° |
| C2 | N3 | H3 | 114.1° | 119.8° |
| C4 | N3 | H3 | 118.4° | 119.9° |
| N3 | C4 | O4 | 118.6° | 120.3° |
| N3 | C4 | C5 | 113.9° | 119.4° |
| O4 | C4 | C5 | 127.4° | 120.4° |
| C4 | C5 | C6 | 119.5° | 119.2° |
| C4 | C5 | H5 | 124.2° | 120.4° |
| C6 | C5 | H5 | 116.3° | 120.5° |
| C5 | C6 | H6 | 114.1° | 120.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 124.7° | 119.9° |
| OP3 | P | OP1 | O5' | 113.1° | 120.1° |
| OP3 | P | OP2 | O5' | 112.8° | 120.0° |
| OP3 | P | OP2 | HOP2 | 57.5° | 60.0° |
| OP3 | P | O5' | C5' | 67.7° | 180.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 59.9° |
| HOP3 | OP3 | P | OP2 | 51.0° | 60.1° |
| HOP3 | OP3 | P | O5' | 62.6° | 180.0° |
| OP1 | P | OP2 | O5' | 124.8° | 120.0° |
| OP1 | P | OP2 | HOP2 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 46.4° | 60.0° |
| OP2 | P | O5' | C5' | 175.4° | 60.0° |
| O5' | P | OP2 | HOP2 | 55.3° | 60.0° |
| P | O5' | C5' | C4' | 167.3° | 180.0° |
| P | O5' | C5' | H5' | 67.4° | 60.0° |
| P | O5' | C5' | H5'' | 42.0° | 60.0° |
| O5' | C5' | C4' | H5' | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.1° | 120.0° |
| O5' | C5' | C4' | O4' | 66.2° | 61.5° |
| O5' | C5' | C4' | C3' | 48.2° | 176.9° |
| O5' | C5' | C4' | H4' | 168.8° | 60.8° |
| C4' | C5' | H5' | H5'' | 119.1° | 120.0° |
| C5' | C4' | O4' | C3' | 124.9° | 119.1° |
| C5' | C4' | O4' | H4' | 114.6° | 122.3° |
| C5' | C4' | C3' | H4' | 114.7° | 122.4° |
| C5' | C4' | O4' | C1' | 149.5° | 159.5° |
| C5' | C4' | C3' | O3' | 73.7° | 98.6° |
| C5' | C4' | C3' | C2' | 163.5° | 142.7° |
| C5' | C4' | C3' | H3' | 42.8° | 24.0° |
| H5' | C5' | C4' | O4' | 168.4° | 178.6° |
| H5' | C5' | C4' | C3' | 77.1° | 63.1° |
| H5' | C5' | C4' | H4' | 43.5° | 59.2° |
| H5'' | C5' | C4' | O4' | 59.1° | 58.6° |
| H5'' | C5' | C4' | C3' | 173.5° | 56.9° |
| H5'' | C5' | C4' | H4' | 65.9° | 179.1° |
| O4' | C4' | C3' | H4' | 125.0° | 118.7° |
| O4' | C4' | C3' | O3' | 165.9° | 142.5° |
| O4' | C4' | C3' | C2' | 43.1° | 23.8° |
| O4' | C4' | C3' | H3' | 77.6° | 94.9° |
| C4' | O4' | C1' | C2' | 3.8° | 40.5° |
| C4' | O4' | C1' | N1 | 117.6° | 159.3° |
| C4' | O4' | C1' | H1' | 123.8° | 78.4° |
| C3' | C4' | O4' | C1' | 24.7° | 40.3° |
| C4' | C3' | O3' | C2' | 113.7° | 114.8° |
| C4' | C3' | O3' | H3' | 125.1° | 122.6° |
| C4' | C3' | C2' | H3' | 124.9° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 178.1° |
| C4' | C3' | C2' | O2' | 72.0° | 118.9° |
| C4' | C3' | C2' | C1' | 45.8° | 0.1° |
| C4' | C3' | C2' | H2' | 168.6° | 118.6° |
| H4' | C4' | O4' | C1' | 95.9° | 78.2° |
| H4' | C4' | C3' | O3' | 40.9° | 23.8° |
| H4' | C4' | C3' | C2' | 81.9° | 94.9° |
| H4' | C4' | C3' | H3' | 157.4° | 146.4° |
| O4' | C1' | C2' | C3' | 30.9° | 24.0° |
| O4' | C1' | C2' | O2' | 84.0° | 142.8° |
| O4' | C1' | C2' | N1 | 118.9° | 118.9° |
| O4' | C1' | C2' | H1' | 122.5° | 118.9° |
| O4' | C1' | C2' | H2' | 156.2° | 94.7° |
| O4' | C1' | N1 | H1' | 122.6° | 122.3° |
| O4' | C1' | N1 | C2 | 159.7° | 55.1° |
| O4' | C1' | N1 | C6 | 21.2° | 124.6° |
| O3' | C3' | C2' | H3' | 116.7° | 122.6° |
| O3' | C3' | C2' | O2' | 46.4° | 0.2° |
| O3' | C3' | C2' | C1' | 164.2° | 118.6° |
| O3' | C3' | C2' | H2' | 73.0° | 122.7° |
| C2' | C3' | O3' | HO3' | 66.3° | 63.3° |
| C3' | C2' | O2' | C1' | 110.0° | 114.7° |
| C3' | C2' | O2' | H2' | 126.1° | 122.6° |
| C3' | C2' | C1' | H2' | 125.3° | 118.7° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 88.0° | 142.9° |
| C3' | C2' | C1' | H1' | 153.4° | 94.8° |
| H3' | C3' | O3' | HO3' | 54.9° | 59.3° |
| H3' | C3' | C2' | O2' | 163.1° | 122.4° |
| H3' | C3' | C2' | C1' | 79.1° | 118.8° |
| H3' | C3' | C2' | H2' | 43.7° | 0.1° |
| O2' | C2' | C1' | H2' | 119.8° | 122.6° |
| O2' | C2' | C1' | N1 | 157.1° | 98.4° |
| O2' | C2' | C1' | H1' | 38.5° | 23.9° |
| C1' | C2' | O2' | HO2' | 70.0° | 176.1° |
| C2' | C1' | N1 | H1' | 120.1° | 122.3° |
| C2' | C1' | N1 | C2 | 83.0° | 60.2° |
| C2' | C1' | N1 | C6 | 96.2° | 120.0° |
| H2' | C2' | O2' | HO2' | 54.0° | 61.2° |
| H2' | C2' | C1' | N1 | 37.3° | 24.2° |
| H2' | C2' | C1' | H1' | 81.3° | 146.5° |
| C1' | N1 | C2 | C6 | 179.2° | 179.8° |
| C1' | N1 | C2 | O2 | 0.4° | 0.3° |
| C1' | N1 | C2 | N3 | 179.8° | 179.7° |
| C1' | N1 | C6 | C5 | 179.5° | 180.0° |
| C1' | N1 | C6 | H6 | 0.5° | 0.0° |
| H1' | C1' | N1 | C2 | 37.1° | 177.4° |
| H1' | C1' | N1 | C6 | 143.7° | 2.3° |
| N1 | C2 | O2 | N3 | 179.8° | 179.5° |
| N1 | C2 | N3 | C4 | 0.7° | 0.5° |
| N1 | C2 | N3 | H3 | 179.3° | 179.8° |
| C2 | N1 | C6 | C5 | 0.4° | 0.2° |
| C2 | N1 | C6 | H6 | 179.6° | 179.7° |
| C6 | N1 | C2 | O2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.6° | 0.5° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 179.7° | 180.0° |
| O2 | C2 | N3 | C4 | 179.5° | 180.0° |
| O2 | C2 | N3 | H3 | 0.4° | 0.3° |
| C2 | N3 | C4 | H3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 179.9° | 179.7° |
| C2 | N3 | C4 | C5 | 0.5° | 0.3° |
| N3 | C4 | O4 | C5 | 179.2° | 180.0° |
| N3 | C4 | C5 | C6 | 0.3° | 0.0° |
| N3 | C4 | C5 | H5 | 179.7° | 180.0° |
| H3 | N3 | C4 | O4 | 0.2° | 0.0° |
| H3 | N3 | C4 | C5 | 179.5° | 180.0° |
| O4 | C4 | C5 | C6 | 179.5° | 180.0° |
| O4 | C4 | C5 | H5 | 0.5° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 179.7° | 180.0° |
| H5 | C5 | C6 | H6 | 0.3° | 0.0° |
