TYU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | H5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C6 | sing | 1.46Å | 1.39Å | |
| N1 | C2 | sing | 1.34Å | 1.37Å | |
| C6 | C5 | sing | 1.53Å | 1.36Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.34Å | 1.36Å | |
| N3 | C4 | sing | 1.46Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | sing | 1.43Å | 1.50Å | |
| C4 | C5 | sing | 1.53Å | 1.45Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C5 | H51 | sing | 1.09Å | 1.10Å | |
| C5 | H52 | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | H1 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | H5' | 109.5° | 106.8° |
| O5' | C5' | C4' | 110.0° | 109.4° |
| O5' | C5' | H5'1 | 109.2° | 109.4° |
| O5' | C5' | H5'' | 109.3° | 109.5° |
| C4' | C5' | H5'1 | 109.2° | 109.5° |
| C4' | C5' | H5'' | 109.3° | 109.5° |
| C5' | C4' | O4' | 108.5° | 109.9° |
| C5' | C4' | C3' | 114.6° | 109.8° |
| C5' | C4' | H4' | 105.7° | 109.9° |
| H5'1 | C5' | H5'' | 109.9° | 109.5° |
| O4' | C4' | C3' | 106.0° | 107.4° |
| O4' | C4' | H4' | 114.3° | 109.9° |
| C4' | O4' | C1' | 109.5° | 107.0° |
| C3' | C4' | H4' | 108.2° | 109.9° |
| C4' | C3' | C2' | 102.4° | 104.0° |
| C4' | C3' | O3' | 111.0° | 110.7° |
| C4' | C3' | H3' | 113.8° | 110.5° |
| O4' | C1' | N1 | 108.6° | 110.6° |
| O4' | C1' | C2' | 104.7° | 103.5° |
| O4' | C1' | H1' | 115.0° | 110.6° |
| N1 | C1' | C2' | 114.7° | 110.8° |
| N1 | C1' | H1' | 105.1° | 110.6° |
| C1' | N1 | C6 | 122.3° | 119.4° |
| C1' | N1 | C2 | 117.2° | 119.3° |
| C2' | C1' | H1' | 109.0° | 110.6° |
| C1' | C2' | O2' | 111.4° | 110.9° |
| C1' | C2' | C3' | 100.9° | 102.1° |
| C1' | C2' | H2' | 115.4° | 110.9° |
| C6 | N1 | C2 | 119.8° | 121.3° |
| N1 | C6 | C5 | 109.7° | 109.2° |
| N1 | C6 | H61 | 109.3° | 109.6° |
| N1 | C6 | H62 | 109.4° | 109.5° |
| N1 | C2 | O2 | 123.5° | 118.7° |
| N1 | C2 | N3 | 113.8° | 122.6° |
| C5 | C6 | H61 | 109.3° | 109.5° |
| C5 | C6 | H62 | 109.4° | 109.5° |
| C6 | C5 | C4 | 111.0° | 108.6° |
| C6 | C5 | H51 | 108.6° | 109.7° |
| C6 | C5 | H52 | 109.0° | 109.6° |
| H61 | C6 | H62 | 109.7° | 109.5° |
| O2 | C2 | N3 | 122.7° | 118.7° |
| C2 | N3 | C4 | 126.1° | 121.4° |
| C2 | N3 | HN3 | 117.0° | 119.3° |
| C4 | N3 | HN3 | 117.0° | 119.3° |
| N3 | C4 | O4 | 105.2° | 109.6° |
| N3 | C4 | C5 | 109.9° | 109.2° |
| N3 | C4 | H4 | 111.0° | 109.5° |
| O4 | C4 | C5 | 106.4° | 109.5° |
| O4 | C4 | H4 | 114.2° | 109.5° |
| C4 | O4 | HO4 | 109.5° | 106.8° |
| C5 | C4 | H4 | 109.9° | 109.5° |
| C4 | C5 | H51 | 108.6° | 109.6° |
| C4 | C5 | H52 | 109.0° | 109.6° |
| H51 | C5 | H52 | 110.7° | 109.8° |
| O2' | C2' | C3' | 113.8° | 110.8° |
| O2' | C2' | H2' | 102.9° | 110.8° |
| C2' | O2' | H1 | 109.5° | 106.9° |
| C3' | C2' | H2' | 113.1° | 110.9° |
| C2' | C3' | O3' | 111.4° | 110.5° |
| C2' | C3' | H3' | 113.4° | 110.5° |
| O3' | C3' | H3' | 105.2° | 110.4° |
| C3' | O3' | H2 | 109.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H5'1 | 119.8° | 119.9° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5'1 | H5'' | 119.9° | 120.0° |
| O5' | C5' | C4' | O4' | 77.1° | 66.7° |
| O5' | C5' | C4' | C3' | 41.1° | 175.3° |
| O5' | C5' | C4' | H4' | 160.0° | 54.3° |
| H5' | O5' | C5' | C4' | 161.9° | 180.0° |
| H5' | O5' | C5' | H5'1 | 78.4° | 60.0° |
| H5' | O5' | C5' | H5'' | 41.9° | 60.0° |
| C4' | C5' | H5'1 | H5'' | 119.9° | 120.0° |
| C5' | C4' | O4' | C3' | 123.5° | 119.4° |
| C5' | C4' | O4' | H4' | 117.5° | 121.0° |
| C5' | C4' | C3' | H4' | 117.5° | 121.0° |
| C5' | C4' | O4' | C1' | 125.8° | 145.9° |
| C5' | C4' | C3' | C2' | 97.0° | 121.4° |
| C5' | C4' | C3' | O3' | 144.1° | 119.9° |
| C5' | C4' | C3' | H3' | 25.7° | 2.8° |
| H5'1 | C5' | C4' | O4' | 42.7° | 53.2° |
| H5'1 | C5' | C4' | C3' | 160.8° | 64.7° |
| H5'1 | C5' | C4' | H4' | 80.2° | 174.3° |
| H5'' | C5' | C4' | O4' | 162.9° | 173.3° |
| H5'' | C5' | C4' | C3' | 78.9° | 55.3° |
| H5'' | C5' | C4' | H4' | 40.0° | 65.7° |
| O4' | C4' | C3' | H4' | 122.9° | 119.5° |
| C4' | O4' | C1' | N1 | 149.5° | 158.8° |
| C4' | O4' | C1' | C2' | 26.5° | 40.1° |
| C4' | O4' | C1' | H1' | 93.1° | 78.4° |
| O4' | C4' | C3' | C2' | 22.6° | 2.0° |
| O4' | C4' | C3' | O3' | 96.4° | 120.6° |
| O4' | C4' | C3' | H3' | 145.3° | 116.6° |
| C3' | C4' | O4' | C1' | 2.3° | 26.5° |
| C4' | C3' | C2' | C1' | 37.0° | 21.0° |
| C4' | C3' | C2' | O2' | 156.3° | 139.2° |
| C4' | C3' | C2' | O3' | 118.6° | 118.9° |
| C4' | C3' | C2' | H3' | 123.0° | 118.6° |
| C4' | C3' | C2' | H2' | 86.8° | 97.3° |
| C4' | C3' | O3' | H3' | 123.4° | 122.7° |
| C4' | C3' | O3' | H2 | 113.0° | 65.3° |
| H4' | C4' | O4' | C1' | 116.6° | 93.1° |
| H4' | C4' | C3' | C2' | 145.5° | 117.6° |
| H4' | C4' | C3' | O3' | 26.5° | 1.1° |
| H4' | C4' | C3' | H3' | 91.8° | 123.8° |
| O4' | C1' | N1 | C2' | 116.7° | 114.2° |
| O4' | C1' | N1 | H1' | 123.6° | 122.9° |
| O4' | C1' | C2' | H1' | 123.6° | 118.5° |
| O4' | C1' | N1 | C6 | 39.1° | 126.5° |
| O4' | C1' | N1 | C2 | 131.6° | 53.3° |
| O4' | C1' | C2' | O2' | 160.7° | 155.3° |
| O4' | C1' | C2' | C3' | 39.6° | 37.1° |
| O4' | C1' | C2' | H2' | 82.6° | 81.2° |
| N1 | C1' | C2' | H1' | 117.5° | 123.0° |
| C1' | N1 | C6 | C2 | 170.5° | 179.8° |
| C1' | N1 | C6 | C5 | 143.0° | 150.9° |
| C1' | N1 | C6 | H61 | 23.1° | 89.1° |
| C1' | N1 | C6 | H62 | 97.0° | 31.0° |
| C1' | N1 | C2 | O2 | 4.0° | 0.8° |
| C1' | N1 | C2 | N3 | 175.7° | 179.7° |
| N1 | C1' | C2' | O2' | 80.4° | 86.2° |
| N1 | C1' | C2' | C3' | 158.5° | 155.7° |
| N1 | C1' | C2' | H2' | 36.3° | 37.4° |
| C2' | C1' | N1 | C6 | 77.6° | 119.4° |
| C2' | C1' | N1 | C2 | 111.7° | 60.9° |
| C1' | C2' | O2' | C3' | 113.2° | 112.7° |
| C1' | C2' | O2' | H2' | 124.2° | 123.6° |
| C1' | C2' | C3' | H2' | 123.8° | 118.2° |
| C1' | C2' | O2' | H1 | 14.6° | 180.0° |
| C1' | C2' | C3' | O3' | 81.7° | 97.9° |
| C1' | C2' | C3' | H3' | 160.0° | 139.6° |
| H1' | C1' | N1 | C6 | 162.7° | 3.6° |
| H1' | C1' | N1 | C2 | 8.0° | 176.2° |
| H1' | C1' | C2' | O2' | 37.1° | 36.8° |
| H1' | C1' | C2' | C3' | 83.9° | 81.4° |
| H1' | C1' | C2' | H2' | 153.9° | 160.4° |
| N1 | C6 | C5 | H61 | 119.9° | 120.0° |
| N1 | C6 | C5 | H62 | 120.0° | 119.9° |
| N1 | C6 | H61 | H62 | 119.9° | 120.1° |
| C6 | N1 | C2 | O2 | 166.9° | 179.4° |
| C6 | N1 | C2 | N3 | 13.4° | 0.1° |
| N1 | C6 | C5 | C4 | 63.0° | 55.5° |
| N1 | C6 | C5 | H51 | 56.3° | 175.2° |
| N1 | C6 | C5 | H52 | 177.0° | 64.2° |
| C2 | N1 | C6 | C5 | 46.5° | 28.8° |
| C2 | N1 | C6 | H61 | 166.4° | 91.1° |
| C2 | N1 | C6 | H62 | 73.4° | 148.8° |
| N1 | C2 | O2 | N3 | 179.7° | 179.5° |
| N1 | C2 | N3 | C4 | 2.0° | 0.1° |
| N1 | C2 | N3 | HN3 | 178.0° | 179.8° |
| C5 | C6 | H61 | H62 | 119.9° | 120.2° |
| C6 | C5 | C4 | N3 | 47.4° | 55.5° |
| C6 | C5 | C4 | O4 | 160.9° | 175.5° |
| C6 | C5 | C4 | H51 | 119.4° | 119.7° |
| C6 | C5 | C4 | H52 | 120.0° | 119.7° |
| C6 | C5 | C4 | H4 | 75.0° | 64.4° |
| C6 | C5 | H51 | H52 | 119.6° | 120.5° |
| H61 | C6 | C5 | C4 | 177.1° | 64.5° |
| H61 | C6 | C5 | H51 | 63.6° | 55.2° |
| H61 | C6 | C5 | H52 | 57.1° | 175.9° |
| H62 | C6 | C5 | C4 | 57.0° | 175.3° |
| H62 | C6 | C5 | H51 | 176.3° | 64.9° |
| H62 | C6 | C5 | H52 | 63.0° | 55.7° |
| O2 | C2 | N3 | C4 | 177.6° | 179.4° |
| O2 | C2 | N3 | HN3 | 2.3° | 0.8° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.8° |
| C2 | N3 | C4 | O4 | 129.0° | 148.7° |
| C2 | N3 | C4 | C5 | 14.8° | 28.8° |
| C2 | N3 | C4 | H4 | 106.9° | 91.1° |
| N3 | C4 | O4 | C5 | 116.6° | 119.7° |
| N3 | C4 | O4 | H4 | 121.9° | 120.2° |
| N3 | C4 | C5 | H4 | 122.4° | 119.9° |
| N3 | C4 | O4 | HO4 | 162.4° | 60.3° |
| N3 | C4 | C5 | H51 | 71.9° | 175.2° |
| N3 | C4 | C5 | H52 | 167.4° | 64.2° |
| HN3 | N3 | C4 | O4 | 51.0° | 31.1° |
| HN3 | N3 | C4 | C5 | 165.2° | 151.0° |
| HN3 | N3 | C4 | H4 | 73.1° | 89.1° |
| O4 | C4 | C5 | H4 | 124.2° | 120.1° |
| O4 | C4 | C5 | H51 | 41.5° | 64.8° |
| O4 | C4 | C5 | H52 | 79.1° | 55.7° |
| C5 | C4 | O4 | HO4 | 45.8° | 180.0° |
| C4 | C5 | H51 | H52 | 119.6° | 120.4° |
| H4 | C4 | O4 | HO4 | 75.6° | 59.9° |
| H4 | C4 | C5 | H51 | 165.7° | 55.3° |
| H4 | C4 | C5 | H52 | 45.0° | 175.9° |
| O2' | C2' | C3' | H2' | 116.9° | 123.5° |
| O2' | C2' | C3' | O3' | 37.7° | 20.3° |
| O2' | C2' | C3' | H3' | 80.7° | 102.2° |
| C3' | C2' | O2' | H1 | 98.5° | 67.3° |
| C2' | C3' | O3' | H3' | 123.2° | 122.6° |
| C2' | C3' | O3' | H2 | 0.4° | 180.0° |
| H2' | C2' | O2' | H1 | 138.8° | 56.3° |
| H2' | C2' | C3' | O3' | 154.5° | 143.9° |
| H2' | C2' | C3' | H3' | 36.2° | 21.3° |
| H3' | C3' | O3' | H2 | 123.6° | 57.4° |
