TYO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG | sing | 1.51Å | 1.52Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CG | CD2 | doub | 1.35Å | 1.40Å | |
| CG | CD1 | sing | 1.46Å | 1.56Å | |
| CD1 | CE1 | doub | 1.34Å | 1.33Å | |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CE1 | OE1 | sing | 1.36Å | 1.43Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| OE1 | HOE1 | sing | 0.97Å | 0.95Å | |
| CD2 | CE2 | sing | 1.46Å | 1.59Å | |
| CD2 | HD21 | sing | 1.08Å | 1.08Å | |
| CE2 | CZ | doub | 1.34Å | 1.34Å | |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| CZ | OH | sing | 1.35Å | 1.43Å | |
| CZ | HZ | sing | 1.08Å | 1.08Å | |
| OH | OH1 | sing | 1.47Å | 1.50Å | |
| OH1 | HOH1 | sing | 0.97Å | 0.95Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 108.4° | 109.5° |
| N | CA | CB | 109.9° | 109.5° |
| N | CA | HA | 110.7° | 109.5° |
| H | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 111.7° | 109.5° |
| C | CA | HA | 108.9° | 109.4° |
| CA | C | O | 121.2° | 120.0° |
| CA | C | OXT | 116.0° | 120.0° |
| CB | CA | HA | 107.4° | 109.5° |
| CA | CB | CG | 114.7° | 109.5° |
| CA | CB | HB1 | 107.7° | 109.5° |
| CA | CB | HB2 | 106.6° | 109.5° |
| CG | CB | HB1 | 107.8° | 109.5° |
| CG | CB | HB2 | 106.5° | 109.5° |
| CB | CG | CD2 | 118.0° | 120.0° |
| CB | CG | CD1 | 117.5° | 120.0° |
| HB1 | CB | HB2 | 113.7° | 109.4° |
| CD2 | CG | CD1 | 123.8° | 120.0° |
| CG | CD2 | CE2 | 125.1° | 120.0° |
| CG | CD2 | HD21 | 117.4° | 120.0° |
| CG | CD1 | CE1 | 121.4° | 120.0° |
| CG | CD1 | HD1 | 119.3° | 120.0° |
| CE1 | CD1 | HD1 | 119.3° | 120.0° |
| CD1 | CE1 | OE1 | 119.0° | 120.0° |
| CD1 | CE1 | HE1 | 120.5° | 120.0° |
| OE1 | CE1 | HE1 | 120.5° | 120.0° |
| CE1 | OE1 | HOE1 | 109.5° | 114.0° |
| CE2 | CD2 | HD21 | 117.4° | 120.0° |
| CD2 | CE2 | CZ | 120.3° | 120.0° |
| CD2 | CE2 | HE2 | 119.8° | 120.0° |
| CZ | CE2 | HE2 | 119.8° | 120.0° |
| CE2 | CZ | OH | 118.8° | 120.0° |
| CE2 | CZ | HZ | 120.6° | 120.0° |
| OH | CZ | HZ | 120.6° | 120.0° |
| CZ | OH | OH1 | 118.9° | 114.0° |
| OH | OH1 | HOH1 | 109.5° | 114.0° |
| O | C | OXT | 122.7° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | C | CB | 121.1° | 120.1° |
| N | CA | C | HA | 120.5° | 120.0° |
| N | CA | CB | HA | 120.4° | 120.0° |
| N | CA | CB | CG | 158.2° | 65.0° |
| N | CA | CB | HB1 | 38.2° | 55.0° |
| N | CA | CB | HB2 | 84.2° | 175.0° |
| N | CA | C | O | 51.6° | 20.0° |
| N | CA | C | OXT | 125.2° | 160.0° |
| H | N | CA | C | 2.3° | 60.0° |
| H | N | CA | CB | 124.6° | 60.0° |
| H | N | CA | HA | 117.0° | 180.0° |
| H2 | N | CA | C | 117.7° | 176.0° |
| H2 | N | CA | CB | 4.5° | 63.9° |
| H2 | N | CA | HA | 122.9° | 56.1° |
| C | CA | CB | HA | 119.3° | 119.9° |
| C | CA | CB | CG | 81.5° | 175.0° |
| C | CA | CB | HB1 | 158.5° | 65.0° |
| C | CA | CB | HB2 | 36.1° | 54.9° |
| CA | C | O | OXT | 176.5° | 180.0° |
| CA | C | OXT | HXT | 176.7° | 180.0° |
| CA | CB | CG | HB1 | 120.0° | 120.0° |
| CA | CB | CG | HB2 | 117.6° | 120.0° |
| CA | CB | HB1 | HB2 | 117.9° | 120.0° |
| CA | CB | CG | CD2 | 106.8° | 95.0° |
| CA | CB | CG | CD1 | 64.3° | 85.0° |
| CB | CA | C | O | 69.5° | 100.0° |
| CB | CA | C | OXT | 113.7° | 80.0° |
| HA | CA | CB | CG | 37.8° | 55.1° |
| HA | CA | CB | HB1 | 82.2° | 175.1° |
| HA | CA | CB | HB2 | 155.4° | 65.0° |
| HA | CA | C | O | 172.1° | 140.0° |
| HA | CA | C | OXT | 4.7° | 40.0° |
| CG | CB | HB1 | HB2 | 117.8° | 120.0° |
| CB | CG | CD2 | CD1 | 170.5° | 180.0° |
| CB | CG | CD1 | CE1 | 149.7° | 0.1° |
| CB | CG | CD1 | HD1 | 30.3° | 180.0° |
| CB | CG | CD2 | CE2 | 150.4° | 179.9° |
| CB | CG | CD2 | HD21 | 29.6° | 0.0° |
| HB1 | CB | CG | CD2 | 133.2° | 25.0° |
| HB1 | CB | CG | CD1 | 55.7° | 155.0° |
| HB2 | CB | CG | CD2 | 10.9° | 145.0° |
| HB2 | CB | CG | CD1 | 178.0° | 35.0° |
| CD2 | CG | CD1 | CE1 | 39.8° | 180.0° |
| CD2 | CG | CD1 | HD1 | 140.2° | 0.0° |
| CG | CD2 | CE2 | HD21 | 180.0° | 179.9° |
| CG | CD2 | CE2 | CZ | 78.1° | 180.0° |
| CG | CD2 | CE2 | HE2 | 101.9° | 0.1° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.9° |
| CG | CD1 | CE1 | OE1 | 103.3° | 180.0° |
| CG | CD1 | CE1 | HE1 | 76.7° | 0.1° |
| CD1 | CG | CD2 | CE2 | 20.1° | 0.0° |
| CD1 | CG | CD2 | HD21 | 159.9° | 180.0° |
| CD1 | CE1 | OE1 | HE1 | 180.0° | 179.9° |
| CD1 | CE1 | OE1 | HOE1 | 2.9° | 180.0° |
| HD1 | CD1 | CE1 | OE1 | 76.7° | 0.1° |
| HD1 | CD1 | CE1 | HE1 | 103.3° | 180.0° |
| HE1 | CE1 | OE1 | HOE1 | 177.1° | 0.0° |
| CD2 | CE2 | CZ | HE2 | 180.0° | 179.9° |
| CD2 | CE2 | CZ | OH | 169.1° | 180.0° |
| CD2 | CE2 | CZ | HZ | 10.9° | 0.0° |
| HD21 | CD2 | CE2 | CZ | 101.8° | 0.1° |
| HD21 | CD2 | CE2 | HE2 | 78.2° | 180.0° |
| CE2 | CZ | OH | HZ | 180.0° | 180.0° |
| CE2 | CZ | OH | OH1 | 144.3° | 180.0° |
| HE2 | CE2 | CZ | OH | 10.9° | 0.1° |
| HE2 | CE2 | CZ | HZ | 169.1° | 179.9° |
| CZ | OH | OH1 | HOH1 | 19.1° | 179.9° |
| HZ | CZ | OH | OH1 | 35.7° | 0.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
