TYN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
N | H | sing | 1.01Å | 1.02Å | |
N | H2 | sing | 1.01Å | 1.02Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
CA | C | sing | 1.51Å | 1.53Å | |
CA | HA | sing | 1.09Å | 1.12Å | |
CB | CG | sing | 1.51Å | 1.52Å | |
CB | HB2 | sing | 1.09Å | 1.12Å | |
CB | HB3 | sing | 1.09Å | 1.11Å | |
CG | CD1 | doub | 1.38Å | 1.40Å | Aromatic |
CG | CD2 | sing | 1.38Å | 1.40Å | Aromatic |
CD1 | CE1 | sing | 1.38Å | 1.40Å | Aromatic |
CD1 | HD1 | sing | 1.08Å | 1.10Å | |
CE1 | CZ | doub | 1.39Å | 1.40Å | Aromatic |
CE1 | HE1 | sing | 1.08Å | 1.10Å | |
CD2 | CE2 | doub | 1.38Å | 1.40Å | Aromatic |
CD2 | HD2 | sing | 1.08Å | 1.10Å | |
CE2 | CZ | sing | 1.39Å | 1.39Å | Aromatic |
CE2 | HE2 | sing | 1.08Å | 1.10Å | |
CZ | OC | sing | 1.36Å | 1.39Å | |
OC | C5 | sing | 1.36Å | 1.38Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | OXT | sing | 1.34Å | 1.33Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
O1 | N1 | sing | 1.47Å | 1.38Å | |
O1 | N2 | sing | 1.47Å | 1.38Å | |
N1 | C1 | sing | 1.41Å | 1.33Å | |
N1 | HN1 | sing | 1.01Å | 1.02Å | |
N2 | C6 | sing | 1.41Å | 1.31Å | |
N2 | HN2 | sing | 1.01Å | 1.02Å | |
N3 | C2 | sing | 1.40Å | 1.47Å | |
N3 | HN31 | sing | 0.97Å | 1.02Å | |
N3 | HN32 | sing | 0.97Å | 1.02Å | |
C1 | C2 | doub | 1.39Å | 1.44Å | Aromatic |
C1 | C6 | sing | 1.39Å | 1.43Å | Aromatic |
C2 | C3 | sing | 1.39Å | 1.35Å | Aromatic |
C3 | C4 | doub | 1.38Å | 1.44Å | Aromatic |
C3 | H3 | sing | 1.08Å | 1.10Å | |
C4 | C5 | sing | 1.39Å | 1.36Å | Aromatic |
C4 | H4 | sing | 1.08Å | 1.10Å | |
C5 | C6 | doub | 1.39Å | 1.43Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | H | 111.9° | 106.7° |
CA | N | H2 | 111.2° | 106.7° |
N | CA | CB | 111.9° | 109.5° |
N | CA | C | 106.4° | 109.5° |
N | CA | HA | 110.1° | 109.4° |
H | N | H2 | 111.3° | 106.8° |
CB | CA | C | 109.7° | 109.5° |
CB | CA | HA | 106.7° | 109.5° |
CA | CB | CG | 113.2° | 109.5° |
CA | CB | HB2 | 110.9° | 109.5° |
CA | CB | HB3 | 110.9° | 109.5° |
C | CA | HA | 112.2° | 109.5° |
CA | C | O | 120.7° | 120.0° |
CA | C | OXT | 116.0° | 120.0° |
CG | CB | HB2 | 110.8° | 109.5° |
CG | CB | HB3 | 110.8° | 109.5° |
CB | CG | CD1 | 121.9° | 119.9° |
CB | CG | CD2 | 120.1° | 120.0° |
HB2 | CB | HB3 | 99.5° | 109.4° |
CD1 | CG | CD2 | 118.0° | 120.1° |
CG | CD1 | CE1 | 121.0° | 120.0° |
CG | CD1 | HD1 | 119.5° | 120.0° |
CG | CD2 | CE2 | 121.5° | 120.1° |
CG | CD2 | HD2 | 119.3° | 120.0° |
CE1 | CD1 | HD1 | 119.5° | 120.0° |
CD1 | CE1 | CZ | 119.8° | 120.0° |
CD1 | CE1 | HE1 | 120.2° | 120.0° |
CZ | CE1 | HE1 | 120.0° | 120.1° |
CE1 | CZ | CE2 | 119.8° | 119.9° |
CE1 | CZ | OC | 121.2° | 120.0° |
CE2 | CD2 | HD2 | 119.2° | 119.9° |
CD2 | CE2 | CZ | 119.9° | 119.9° |
CD2 | CE2 | HE2 | 120.4° | 120.0° |
CZ | CE2 | HE2 | 119.7° | 120.1° |
CE2 | CZ | OC | 119.0° | 120.0° |
CZ | OC | C5 | 120.4° | 106.8° |
OC | C5 | C4 | 116.9° | 119.9° |
OC | C5 | C6 | 124.8° | 120.0° |
O | C | OXT | 123.3° | 119.9° |
C | OXT | HXT | 116.0° | 120.1° |
N1 | O1 | N2 | 112.7° | 103.3° |
O1 | N1 | C1 | 104.4° | 105.4° |
O1 | N1 | HN1 | 114.1° | 106.8° |
O1 | N2 | C6 | 104.3° | 105.3° |
O1 | N2 | HN2 | 114.1° | 106.7° |
C1 | N1 | HN1 | 114.2° | 106.7° |
N1 | C1 | C2 | 133.0° | 131.2° |
N1 | C1 | C6 | 108.6° | 109.1° |
C6 | N2 | HN2 | 114.2° | 106.6° |
N2 | C6 | C1 | 109.9° | 109.1° |
N2 | C6 | C5 | 129.0° | 131.1° |
C2 | N3 | HN31 | 120.1° | 120.0° |
C2 | N3 | HN32 | 108.4° | 120.0° |
N3 | C2 | C1 | 120.1° | 120.0° |
N3 | C2 | C3 | 120.6° | 119.9° |
HN31 | N3 | HN32 | 108.4° | 120.0° |
C2 | C1 | C6 | 118.4° | 119.7° |
C1 | C2 | C3 | 119.3° | 120.1° |
C1 | C6 | C5 | 121.1° | 119.8° |
C2 | C3 | C4 | 121.6° | 120.1° |
C2 | C3 | H3 | 115.9° | 120.0° |
C4 | C3 | H3 | 122.5° | 119.9° |
C3 | C4 | C5 | 121.3° | 120.1° |
C3 | C4 | H4 | 122.4° | 120.0° |
C5 | C4 | H4 | 116.3° | 119.9° |
C4 | C5 | C6 | 118.3° | 120.1° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | H | H2 | 125.2° | 113.8° |
N | CA | CB | C | 117.8° | 120.0° |
N | CA | CB | HA | 120.4° | 120.0° |
N | CA | C | HA | 120.4° | 119.9° |
N | CA | CB | CG | 178.4° | 60.0° |
N | CA | CB | HB2 | 56.4° | 60.1° |
N | CA | CB | HB3 | 53.1° | 180.0° |
N | CA | C | O | 68.6° | 30.0° |
N | CA | C | OXT | 110.6° | 150.0° |
H | N | CA | CB | 180.0° | 53.8° |
H | N | CA | C | 60.2° | 173.8° |
H | N | CA | HA | 61.5° | 66.2° |
H2 | N | CA | CB | 54.8° | 60.0° |
H2 | N | CA | C | 174.6° | 60.0° |
H2 | N | CA | HA | 63.7° | 180.0° |
CB | CA | C | HA | 118.4° | 120.0° |
CA | CB | CG | HB2 | 125.2° | 120.1° |
CA | CB | CG | HB3 | 125.3° | 120.0° |
CA | CB | HB2 | HB3 | 116.8° | 120.0° |
CA | CB | CG | CD1 | 36.8° | 90.0° |
CA | CB | CG | CD2 | 143.2° | 90.3° |
CB | CA | C | O | 52.6° | 90.0° |
CB | CA | C | OXT | 128.2° | 90.0° |
C | CA | CB | CG | 60.5° | 180.0° |
C | CA | CB | HB2 | 174.2° | 60.0° |
C | CA | CB | HB3 | 64.7° | 60.0° |
CA | C | O | OXT | 179.2° | 180.0° |
CA | C | OXT | HXT | 180.0° | 179.9° |
HA | CA | CB | CG | 61.2° | 60.0° |
HA | CA | CB | HB2 | 64.0° | 180.0° |
HA | CA | CB | HB3 | 173.5° | 60.0° |
HA | CA | C | O | 170.9° | 150.0° |
HA | CA | C | OXT | 9.8° | 30.0° |
CG | CB | HB2 | HB3 | 116.7° | 119.9° |
CB | CG | CD1 | CD2 | 180.0° | 179.7° |
CB | CG | CD1 | CE1 | 179.6° | 180.0° |
CB | CG | CD1 | HD1 | 0.4° | 0.0° |
CB | CG | CD2 | CE2 | 179.6° | 179.7° |
CB | CG | CD2 | HD2 | 0.4° | 0.3° |
HB2 | CB | CG | CD1 | 88.4° | 30.0° |
HB2 | CB | CG | CD2 | 91.6° | 149.7° |
HB3 | CB | CG | CD1 | 162.0° | 150.0° |
HB3 | CB | CG | CD2 | 18.0° | 29.8° |
CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
CG | CD1 | CE1 | CZ | 0.4° | 0.0° |
CG | CD1 | CE1 | HE1 | 179.6° | 180.0° |
CD1 | CG | CD2 | CE2 | 0.4° | 0.5° |
CD1 | CG | CD2 | HD2 | 179.6° | 180.0° |
CD2 | CG | CD1 | CE1 | 0.4° | 0.3° |
CD2 | CG | CD1 | HD1 | 179.6° | 179.8° |
CG | CD2 | CE2 | HD2 | 180.0° | 179.5° |
CG | CD2 | CE2 | CZ | 0.4° | 0.5° |
CG | CD2 | CE2 | HE2 | 179.6° | 179.7° |
CD1 | CE1 | CZ | HE1 | 180.0° | 179.9° |
CD1 | CE1 | CZ | CE2 | 0.4° | 0.0° |
CD1 | CE1 | CZ | OC | 179.4° | 180.0° |
HD1 | CD1 | CE1 | CZ | 179.6° | 180.0° |
HD1 | CD1 | CE1 | HE1 | 0.4° | 0.0° |
CE1 | CZ | CE2 | CD2 | 0.4° | 0.3° |
CE1 | CZ | CE2 | OC | 179.0° | 180.0° |
CE1 | CZ | CE2 | HE2 | 179.6° | 180.0° |
CE1 | CZ | OC | C5 | 17.3° | 94.8° |
HE1 | CE1 | CZ | CE2 | 179.6° | 179.9° |
HE1 | CE1 | CZ | OC | 0.6° | 0.1° |
CD2 | CE2 | CZ | HE2 | 180.0° | 179.7° |
CD2 | CE2 | CZ | OC | 179.4° | 179.7° |
HD2 | CD2 | CE2 | CZ | 179.6° | 180.0° |
HD2 | CD2 | CE2 | HE2 | 0.4° | 0.3° |
CE2 | CZ | OC | C5 | 161.7° | 85.2° |
HE2 | CE2 | CZ | OC | 0.6° | 0.0° |
CZ | OC | C5 | C4 | 66.5° | 5.6° |
CZ | OC | C5 | C6 | 114.4° | 174.7° |
OC | C5 | C6 | N2 | 1.4° | 0.6° |
OC | C5 | C6 | C1 | 179.6° | 179.7° |
OC | C5 | C4 | C3 | 179.8° | 179.9° |
OC | C5 | C4 | C6 | 179.2° | 179.7° |
OC | C5 | C4 | H4 | 0.2° | 0.0° |
O | C | OXT | HXT | 0.8° | 0.0° |
O1 | N1 | C1 | HN1 | 125.3° | 113.3° |
N1 | O1 | N2 | C6 | 0.3° | 27.0° |
N1 | O1 | N2 | HN2 | 124.9° | 139.9° |
O1 | N1 | C1 | C2 | 179.3° | 162.8° |
O1 | N1 | C1 | C6 | 1.0° | 16.9° |
N2 | O1 | N1 | C1 | 0.5° | 26.7° |
N2 | O1 | N1 | HN1 | 124.9° | 140.0° |
O1 | N2 | C6 | HN2 | 125.2° | 113.1° |
O1 | N2 | C6 | C1 | 1.0° | 17.6° |
O1 | N2 | C6 | C5 | 179.3° | 163.3° |
N1 | C1 | C6 | N2 | 1.3° | 0.4° |
N1 | C1 | C2 | N3 | 1.4° | 0.1° |
N1 | C1 | C2 | C6 | 178.1° | 179.7° |
N1 | C1 | C2 | C3 | 179.4° | 179.9° |
N1 | C1 | C6 | C5 | 179.8° | 179.7° |
HN1 | N1 | C1 | C2 | 54.0° | 49.5° |
HN1 | N1 | C1 | C6 | 124.3° | 130.2° |
N2 | C6 | C1 | C2 | 179.9° | 179.8° |
N2 | C6 | C1 | C5 | 178.5° | 179.3° |
N2 | C6 | C5 | C4 | 179.5° | 179.6° |
HN2 | N2 | C6 | C1 | 124.2° | 130.7° |
HN2 | N2 | C6 | C5 | 54.1° | 50.2° |
C2 | N3 | HN31 | HN32 | 125.3° | 179.9° |
N3 | C2 | C1 | C3 | 179.3° | 180.0° |
N3 | C2 | C1 | C6 | 179.5° | 179.7° |
N3 | C2 | C3 | C4 | 179.8° | 180.0° |
N3 | C2 | C3 | H3 | 0.2° | 0.1° |
HN31 | N3 | C2 | C1 | 180.0° | 180.0° |
HN31 | N3 | C2 | C3 | 0.8° | 0.0° |
HN32 | N3 | C2 | C1 | 54.7° | 0.1° |
HN32 | N3 | C2 | C3 | 126.1° | 180.0° |
C1 | C2 | C3 | C4 | 0.6° | 0.1° |
C1 | C2 | C3 | H3 | 179.4° | 180.0° |
C2 | C1 | C6 | C5 | 1.7° | 0.6° |
C6 | C1 | C2 | C3 | 1.3° | 0.3° |
C1 | C6 | C5 | C4 | 1.3° | 0.5° |
C2 | C3 | C4 | H3 | 180.0° | 179.9° |
C2 | C3 | C4 | C5 | 0.2° | 0.1° |
C2 | C3 | C4 | H4 | 179.7° | 180.0° |
C3 | C4 | C5 | H4 | 180.0° | 179.9° |
C3 | C4 | C5 | C6 | 0.6° | 0.2° |
H3 | C3 | C4 | C5 | 179.7° | 180.0° |
H3 | C3 | C4 | H4 | 0.3° | 0.1° |
H4 | C4 | C5 | C6 | 179.4° | 179.7° |