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TYM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Psing1.61Å1.51Å
PO2Pdoub1.48Å1.50Å
PO5'sing1.61Å1.72Å
POPPsing1.61Å1.75Å
O1PH1POsing0.97Å0.95Å
O5'C5'sing1.43Å1.39Å
C5'C4'sing1.53Å1.52Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.59Å
C4'H4'Csing1.09Å1.12Å
O4'C1'sing1.44Å1.42Å
C1'N9sing1.46Å1.45Å
C1'C2'sing1.55Å1.60Å
C1'H1'Csing1.09Å1.11Å
N9C4sing1.37Å1.41ÅAromatic
N9C8sing1.36Å1.39ÅAromatic
C4N3doub1.33Å1.37ÅAromatic
C4C5sing1.40Å1.36ÅAromatic
N3C2sing1.32Å1.33ÅAromatic
C2N1doub1.32Å1.33ÅAromatic
C2HC2sing1.08Å1.10Å
N1C6sing1.33Å1.34ÅAromatic
C6N6sing1.38Å1.35Å
C6C5doub1.41Å1.42ÅAromatic
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
C5N7sing1.35Å1.40ÅAromatic
N7C8doub1.30Å1.30ÅAromatic
C8HC8sing1.08Å1.10Å
C2'O2'sing1.43Å1.45Å
C2'C3'sing1.55Å1.53Å
C2'H2'Csing1.09Å1.12Å
O2'H2'Osing0.97Å0.95Å
C3'O3'sing1.43Å1.41Å
C3'H3'Csing1.09Å1.11Å
O3'H3'Osing0.97Å0.95Å
NH3CAsing1.47Å1.49Å
NH3HH31sing1.01Å1.02Å
NH3HH32sing1.01Å1.02Å
CACBsing1.53Å1.52Å
CACsing1.51Å1.55Å
CAHCAsing1.09Å1.11Å
CBCGsing1.51Å1.54Å
CBHCB1sing1.09Å1.12Å
CBHCB2sing1.09Å1.12Å
CGCD2sing1.46Å1.39ÅAromatic
CGCD1doub1.34Å1.39ÅAromatic
CD2CE2doub1.41Å1.43ÅAromatic
CD2CE3sing1.40Å1.40ÅAromatic
CE2NE1sing1.38Å1.35ÅAromatic
CE2CZ2sing1.39Å1.43ÅAromatic
CE3CZ3doub1.37Å1.39ÅAromatic
CE3HE3Csing1.08Å1.10Å
CD1NE1sing1.37Å1.36ÅAromatic
CD1HD1Csing1.08Å1.10Å
NE1HE1Nsing0.97Å1.02Å
CZ2CH2doub1.38Å1.40ÅAromatic
CZ2HZ2Csing1.08Å1.10Å
CZ3CH2sing1.39Å1.42ÅAromatic
CZ3HZ3Csing1.08Å1.10Å
CH2HH2Csing1.08Å1.10Å
COdoub1.21Å1.22Å
COPPsing1.34Å1.35Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P123.3°109.4°
O1PPO5'111.5°109.4°
O1PPOPP109.0°109.4°
PO1PH1PO123.3°106.8°
O2PPO5'107.9°109.6°
O2PPOPP108.2°109.5°
O5'POPP92.6°109.5°
PO5'C5'118.3°106.8°
POPPC116.5°120.0°
O5'C5'C4'110.4°109.5°
O5'C5'H5'1111.8°109.5°
O5'C5'H5'2111.8°109.5°
C4'C5'H5'1111.9°109.5°
C4'C5'H5'2111.9°109.5°
C5'C4'O4'107.5°109.9°
C5'C4'C3'115.1°109.9°
C5'C4'H4'C106.0°109.9°
H5'1C5'H5'298.5°109.5°
O4'C4'C3'106.2°107.4°
O4'C4'H4'C114.9°109.9°
C4'O4'C1'112.2°107.0°
C3'C4'H4'C107.4°109.8°
C4'C3'C2'100.8°104.0°
C4'C3'O3'106.7°110.8°
C4'C3'H3'C118.1°110.5°
O4'C1'N9110.5°110.7°
O4'C1'C2'101.6°103.5°
O4'C1'H1'C115.1°110.6°
N9C1'C2'112.9°110.8°
N9C1'H1'C104.3°110.5°
C1'N9C4125.0°126.4°
C1'N9C8130.0°126.3°
C2'C1'H1'C112.8°110.6°
C1'C2'O2'109.9°111.0°
C1'C2'C3'102.2°102.1°
C1'C2'H2'C115.1°110.9°
C4N9C8105.0°107.4°
N9C4N3127.7°134.9°
N9C4C5105.6°106.1°
N9C8N7113.2°110.0°
N9C8HC8126.6°124.9°
N3C4C5126.7°119.0°
C4N3C2110.8°120.7°
C4C5C6116.7°118.2°
C4C5N7111.2°107.1°
N3C2N1128.4°122.5°
N3C2HC2115.6°118.8°
N1C2HC2116.0°118.7°
C2N1C6119.8°121.1°
N1C6N6120.3°120.7°
N1C6C5117.6°118.5°
N6C6C5122.2°120.8°
C6N6HN61120.3°120.0°
C6N6HN62108.4°120.0°
C6C5N7132.1°134.7°
HN61N6HN62108.3°120.0°
C5N7C8105.0°109.4°
N7C8HC8120.2°125.1°
O2'C2'C3'113.2°110.8°
O2'C2'H2'C104.7°110.8°
C2'O2'H2'O109.8°106.9°
C3'C2'H2'C112.0°111.0°
C2'C3'O3'113.9°110.5°
C2'C3'H3'C111.4°110.5°
O3'C3'H3'C106.0°110.4°
C3'O3'H3'O106.7°106.8°
CANH3HH31110.5°106.7°
CANH3HH32111.8°106.7°
NH3CACB110.5°109.5°
NH3CAC107.2°109.5°
NH3CAHCA108.5°109.5°
HH31NH3HH32111.9°106.7°
CBCAC103.0°109.5°
CBCAHCA112.3°109.4°
CACBCG115.0°109.4°
CACBHCB1110.2°109.5°
CACBHCB2110.2°109.5°
CCAHCA115.3°109.5°
CACO123.4°120.0°
CACOPP117.2°120.1°
CGCBHCB1110.2°109.5°
CGCBHCB2110.2°109.5°
CBCGCD2126.6°126.5°
CBCGCD1121.2°126.5°
HCB1CBHCB2100.0°109.4°
CD2CGCD1112.2°107.0°
CGCD2CE2102.5°106.0°
CGCD2CE3137.5°134.0°
CGCD1NE1105.0°110.0°
CGCD1HD1C128.4°125.0°
CE2CD2CE3120.0°119.9°
CD2CE2NE1109.3°107.1°
CD2CE2CZ2119.6°119.3°
CD2CE3CZ3120.2°119.8°
CD2CE3HE3C120.2°120.1°
NE1CE2CZ2131.1°133.5°
CE2NE1CD1110.9°109.9°
CE2NE1HE1N124.4°125.0°
CE2CZ2CH2119.2°119.8°
CE2CZ2HZ2C121.4°120.1°
CZ3CE3HE3C119.6°120.1°
CE3CZ3CH2120.6°120.5°
CE3CZ3HZ3C118.7°119.7°
NE1CD1HD1C126.6°125.0°
CD1NE1HE1N124.6°125.1°
CH2CZ2HZ2C119.4°120.1°
CZ2CH2CZ3120.5°120.7°
CZ2CH2HH2C119.0°119.6°
CH2CZ3HZ3C120.7°119.8°
CZ3CH2HH2C120.5°119.7°
OCOPP119.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO5'132.3°120.0°
O1PPO2POPP128.8°119.9°
O1PPO5'OPP111.6°119.9°
O1PPO5'C5'40.7°60.0°
O1PPOPPC67.3°60.1°
O2PPO5'OPP110.1°120.1°
O2PPO1PH1PO180.0°180.0°
O2PPO5'C5'179.1°59.9°
O2PPOPPC69.1°59.9°
O5'PO1PH1PO49.2°60.0°
PO5'C5'C4'148.0°180.0°
PO5'C5'H5'122.7°60.1°
PO5'C5'H5'286.7°59.9°
O5'POPPC178.9°180.0°
OPPPO1PH1PO51.6°60.0°
OPPPO5'C5'70.8°180.0°
POPPCCA160.2°180.0°
POPPCO16.5°0.2°
O5'C5'C4'H5'1125.2°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2117.7°120.0°
O5'C5'C4'O4'52.9°61.7°
O5'C5'C4'C3'65.2°179.7°
O5'C5'C4'H4'C176.3°59.3°
C4'C5'H5'1H5'2117.8°120.0°
C5'C4'O4'C3'123.7°119.5°
C5'C4'O4'H4'C117.7°121.0°
C5'C4'C3'H4'C117.7°121.0°
C5'C4'O4'C1'128.0°145.9°
C5'C4'C3'C2'97.1°121.4°
C5'C4'C3'O3'143.7°119.9°
C5'C4'C3'H3'C24.5°2.8°
H5'1C5'C4'O4'178.1°58.3°
H5'1C5'C4'C3'60.0°59.7°
H5'1C5'C4'H4'C58.5°179.3°
H5'2C5'C4'O4'72.4°178.3°
H5'2C5'C4'C3'169.5°60.3°
H5'2C5'C4'H4'C51.0°60.7°
O4'C4'C3'H4'C123.4°119.5°
C4'O4'C1'N9147.5°158.7°
C4'O4'C1'C2'27.5°40.0°
C4'O4'C1'H1'C94.7°78.4°
O4'C4'C3'C2'21.8°1.9°
O4'C4'C3'O3'97.5°120.6°
O4'C4'C3'H3'C143.4°116.7°
C3'C4'O4'C1'4.4°26.4°
C4'C3'C2'C1'36.8°21.0°
C4'C3'C2'O2'154.9°139.2°
C4'C3'C2'O3'113.9°118.9°
C4'C3'C2'H3'C126.2°118.6°
C4'C3'C2'H2'C87.0°97.2°
C4'C3'O3'H3'C126.7°122.7°
C4'C3'O3'H3'O180.0°176.2°
H4'CC4'O4'C1'114.2°93.1°
H4'CC4'C3'C2'145.2°117.6°
H4'CC4'C3'O3'25.9°1.1°
H4'CC4'C3'H3'C93.2°123.8°
O4'C1'N9C2'113.0°114.2°
O4'C1'N9H1'C124.2°122.9°
O4'C1'C2'H1'C123.8°118.5°
O4'C1'N9C4125.8°151.8°
O4'C1'N9C852.8°28.6°
O4'C1'C2'O2'160.8°155.2°
O4'C1'C2'C3'40.4°37.1°
O4'C1'C2'H2'C81.4°81.2°
N9C1'C2'H1'C117.9°122.9°
C1'N9C4C8178.9°179.6°
C1'N9C4N30.5°0.9°
C1'N9C4C5178.7°179.9°
C1'N9C8N7178.9°180.0°
C1'N9C8HC81.1°0.1°
N9C1'C2'O2'80.9°86.1°
N9C1'C2'C3'158.7°155.7°
N9C1'C2'H2'C37.0°37.5°
C2'C1'N9C4121.1°94.0°
C2'C1'N9C860.2°85.6°
C1'C2'O2'C3'113.5°112.7°
C1'C2'O2'H2'C124.2°123.6°
C1'C2'C3'H2'C123.8°118.2°
C1'C2'O2'H2'O180.0°180.0°
C1'C2'C3'O3'77.1°98.0°
C1'C2'C3'H3'C163.0°139.6°
H1'CC1'N9C41.7°28.9°
H1'CC1'N9C8177.0°151.5°
H1'CC1'C2'O2'37.0°36.7°
H1'CC1'C2'C3'83.4°81.4°
H1'CC1'C2'H2'C154.9°160.3°
N9C4N3C5179.0°178.9°
N9C4N3C2179.6°179.5°
N9C4C5C6179.5°179.7°
N9C4C5N70.5°0.4°
C4N9C8N70.1°0.3°
C4N9C8HC8179.9°179.7°
C8N9C4N3179.4°179.5°
C8N9C4C50.3°0.5°
N9C8N7C50.4°0.0°
N9C8N7HC8180.0°180.0°
C4N3C2N11.1°0.3°
C4N3C2HC2179.0°179.8°
N3C4C5C60.3°0.5°
N3C4C5N7179.7°179.6°
C5C4N3C21.4°0.6°
C4C5C6N11.4°0.2°
C4C5C6N6179.2°179.7°
C4C5C6N7180.0°179.8°
C4C5N7C80.5°0.3°
N3C2N1HC2180.0°180.0°
N3C2N1C60.5°0.0°
C2N1C6N6179.6°179.9°
C2N1C6C51.8°0.1°
HC2C2N1C6179.4°179.9°
N1C6N6C5177.8°179.9°
N1C6N6HN61180.0°0.0°
N1C6N6HN6254.8°180.0°
N1C6C5N7178.7°180.0°
C6N6HN61HN62125.3°180.0°
N6C6C5N70.9°0.1°
C5C6N6HN612.3°179.9°
C5C6N6HN62127.5°0.1°
C6C5N7C8179.4°179.9°
C5N7C8HC8179.6°180.0°
O2'C2'C3'H2'C118.1°123.6°
O2'C2'C3'O3'41.0°20.3°
O2'C2'C3'H3'C78.9°102.2°
C3'C2'O2'H2'O66.5°67.3°
C2'C3'O3'H3'C122.9°122.5°
C2'C3'O3'H3'O69.7°61.4°
H2'CC2'O2'H2'O55.8°56.4°
H2'CC2'C3'O3'159.1°143.8°
H2'CC2'C3'H3'C39.2°21.4°
H3'CC3'O3'H3'O53.3°61.1°
CANH3HH31HH32125.3°113.8°
NH3CACBC114.2°120.0°
NH3CACBHCA121.2°120.0°
NH3CACHCA120.8°120.1°
NH3CACBCG66.1°60.0°
NH3CACBHCB159.2°60.0°
NH3CACBHCB2168.6°180.0°
NH3CACO26.0°30.1°
NH3CACOPP157.5°150.1°
HH31NH3CACB180.0°60.0°
HH31NH3CAC68.5°60.0°
HH31NH3CAHCA56.6°180.0°
HH32NH3CACB54.7°53.8°
HH32NH3CAC166.2°173.8°
HH32NH3CAHCA68.7°66.2°
CBCACHCA122.6°120.0°
CACBCGHCB1125.3°120.1°
CACBCGHCB2125.3°120.0°
CACBHCB1HCB2116.0°120.0°
CACBCGCD271.3°90.3°
CACBCGCD1108.5°90.1°
CBCACO90.5°89.9°
CBCACOPP86.0°89.9°
CCACBCG179.7°180.0°
CCACBHCB155.0°60.0°
CCACBHCB254.5°60.0°
CACOOPP176.4°179.9°
HCACACBCG55.1°60.0°
HCACACBHCB1179.6°180.0°
HCACACBHCB270.2°60.0°
HCACACO146.9°150.1°
HCACACOPP36.6°30.0°
CGCBHCB1HCB2116.0°120.0°
CBCGCD2CD1179.8°179.7°
CBCGCD2CE2179.0°179.9°
CBCGCD2CE30.4°0.8°
CBCGCD1NE1179.7°179.9°
CBCGCD1HD1C0.3°0.0°
HCB1CBCGCD2163.4°149.6°
HCB1CBCGCD116.8°30.0°
HCB2CBCGCD253.9°29.6°
HCB2CBCGCD1126.2°150.0°
CGCD2CE2CE3179.6°179.3°
CGCD2CE2NE11.2°0.4°
CGCD2CE2CZ2179.7°179.8°
CGCD2CE3CZ3179.4°179.6°
CGCD2CE3HE3C0.6°0.6°
CD2CGCD1NE10.1°0.3°
CD2CGCD1HD1C179.8°179.7°
CD1CGCD2CE20.8°0.4°
CD1CGCD2CE3179.7°179.6°
CGCD1NE1CE20.6°0.0°
CGCD1NE1HD1C180.0°180.0°
CGCD1NE1HE1N179.4°180.0°
CD2CE2NE1CZ2178.3°179.8°
CE2CD2CE3CZ30.0°0.5°
CE2CD2CE3HE3C180.0°179.7°
CD2CE2NE1CD11.2°0.2°
CD2CE2NE1HE1N178.8°179.8°
CD2CE2CZ2CH20.6°0.3°
CD2CE2CZ2HZ2C179.4°179.8°
CE3CD2CE2NE1179.2°179.7°
CE3CD2CE2CZ20.7°0.5°
CD2CE3CZ3HE3C180.0°179.8°
CD2CE3CZ3CH20.9°0.3°
CD2CE3CZ3HZ3C179.1°179.7°
CE2NE1CD1HE1N180.0°180.0°
CE2NE1CD1HD1C179.4°179.9°
NE1CE2CZ2CH2178.7°180.0°
NE1CE2CZ2HZ2C1.3°0.0°
CZ2CE2NE1CD1179.4°180.0°
CZ2CE2NE1HE1N0.6°0.0°
CE2CZ2CH2HZ2C180.0°180.0°
CE2CZ2CH2CZ30.3°0.0°
CE2CZ2CH2HH2C179.7°180.0°
CE3CZ3CH2CZ21.1°0.0°
CE3CZ3CH2HZ3C180.0°180.0°
CE3CZ3CH2HH2C179.0°180.0°
HE3CCE3CZ3CH2179.1°179.9°
HE3CCE3CZ3HZ3C0.9°0.1°
HD1CCD1NE1HE1N0.6°0.0°
CZ2CH2CZ3HH2C180.0°179.9°
CZ2CH2CZ3HZ3C179.0°179.9°
HZ2CCZ2CH2CZ3179.7°180.0°
HZ2CCZ2CH2HH2C0.3°0.1°
HZ3CCZ3CH2HH2C1.0°0.0°

222415

PDB entries from 2024-07-10

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