TXS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C21 | C22 | sing | 1.54Å | 1.54Å | |
| C21 | N25 | sing | 1.48Å | 1.47Å | |
| C22 | C23 | sing | 1.55Å | 1.54Å | |
| C23 | C24 | sing | 1.55Å | 1.53Å | |
| C24 | N25 | sing | 1.49Å | 1.47Å | |
| N25 | C5' | sing | 1.47Å | 1.47Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.55Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.54Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C1' | N1 | sing | 1.47Å | 1.48Å | |
| N1 | C6 | sing | 1.37Å | 1.40Å | |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| C6 | C5 | doub | 1.35Å | 1.38Å | |
| C5 | C5M | sing | 1.51Å | 1.52Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.41Å | |
| N3 | C2 | sing | 1.35Å | 1.41Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C21 | H21 | sing | 1.09Å | 1.10Å | |
| C21 | H21A | sing | 1.09Å | 1.10Å | |
| C22 | H22 | sing | 1.09Å | 1.10Å | |
| C22 | H22A | sing | 1.09Å | 1.10Å | |
| C23 | H23 | sing | 1.09Å | 1.10Å | |
| C23 | H23A | sing | 1.09Å | 1.10Å | |
| C24 | H24 | sing | 1.09Å | 1.10Å | |
| C24 | H24A | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C5M | H5M | sing | 1.09Å | 1.10Å | |
| C5M | H5MA | sing | 1.09Å | 1.10Å | |
| C5M | H5MB | sing | 1.09Å | 1.10Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C22 | C21 | N25 | 105.1° | 107.0° |
| C21 | C22 | C23 | 105.1° | 105.2° |
| C22 | C21 | H21 | 111.0° | 110.0° |
| C22 | C21 | H21A | 111.9° | 109.9° |
| C21 | C22 | H22 | 111.0° | 110.3° |
| C21 | C22 | H22A | 111.9° | 110.3° |
| C21 | N25 | C24 | 104.4° | 105.8° |
| C21 | N25 | C5' | 109.0° | 111.0° |
| N25 | C21 | H21 | 110.9° | 109.9° |
| N25 | C21 | H21A | 111.9° | 109.9° |
| C22 | C23 | C24 | 104.6° | 102.9° |
| C23 | C22 | H22 | 111.0° | 110.3° |
| C23 | C22 | H22A | 111.9° | 110.3° |
| C22 | C23 | H23 | 111.1° | 110.7° |
| C22 | C23 | H23A | 112.2° | 110.7° |
| C23 | C24 | N25 | 103.7° | 103.2° |
| C24 | C23 | H23 | 111.2° | 110.7° |
| C24 | C23 | H23A | 112.2° | 110.7° |
| C23 | C24 | H24 | 111.4° | 110.7° |
| C23 | C24 | H24A | 112.7° | 110.6° |
| C24 | N25 | C5' | 109.9° | 111.0° |
| N25 | C24 | H24 | 111.4° | 110.7° |
| N25 | C24 | H24A | 112.7° | 110.7° |
| N25 | C5' | C4' | 106.8° | 109.5° |
| N25 | C5' | H5' | 110.4° | 109.4° |
| N25 | C5' | H5'A | 111.0° | 109.5° |
| C5' | C4' | O4' | 116.3° | 110.3° |
| C5' | C4' | C3' | 114.1° | 110.4° |
| C4' | C5' | H5' | 110.4° | 109.5° |
| C4' | C5' | H5'A | 111.0° | 109.5° |
| C5' | C4' | H4' | 99.3° | 110.3° |
| O4' | C4' | C3' | 103.2° | 104.8° |
| C4' | O4' | C1' | 92.2° | 105.3° |
| O4' | C4' | H4' | 111.0° | 110.4° |
| C4' | C3' | O3' | 107.2° | 110.5° |
| C4' | C3' | C2' | 102.6° | 104.1° |
| C3' | C4' | H4' | 113.3° | 110.5° |
| C4' | C3' | H3' | 115.3° | 110.5° |
| O4' | C1' | C2' | 100.9° | 104.8° |
| O4' | C1' | N1 | 119.5° | 110.4° |
| O4' | C1' | H1' | 118.9° | 110.4° |
| O3' | C3' | C2' | 109.9° | 110.5° |
| O3' | C3' | H3' | 108.7° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C2' | C1' | 95.7° | 104.0° |
| C2' | C3' | H3' | 112.9° | 110.7° |
| C3' | C2' | H2' | 114.4° | 110.5° |
| C3' | C2' | H2'A | 117.1° | 110.5° |
| C2' | C1' | N1 | 127.0° | 110.3° |
| C1' | C2' | H2' | 114.3° | 110.5° |
| C1' | C2' | H2'A | 117.1° | 110.5° |
| C2' | C1' | H1' | 108.6° | 110.4° |
| C1' | N1 | C6 | 113.3° | 119.7° |
| C1' | N1 | C2 | 126.0° | 119.7° |
| N1 | C1' | H1' | 81.7° | 110.4° |
| C6 | N1 | C2 | 120.5° | 120.7° |
| N1 | C6 | C5 | 120.8° | 119.6° |
| N1 | C6 | H6 | 119.6° | 120.2° |
| N1 | C2 | N3 | 118.2° | 120.9° |
| N1 | C2 | O2 | 121.9° | 119.6° |
| C6 | C5 | C5M | 118.0° | 120.4° |
| C6 | C5 | C4 | 119.6° | 119.1° |
| C5 | C6 | H6 | 119.6° | 120.2° |
| C5M | C5 | C4 | 122.4° | 120.4° |
| C5 | C5M | H5M | 109.5° | 109.5° |
| C5 | C5M | H5MA | 109.5° | 109.5° |
| C5 | C5M | H5MB | 109.4° | 109.5° |
| C5 | C4 | O4 | 120.3° | 120.3° |
| C5 | C4 | N3 | 120.3° | 119.4° |
| O4 | C4 | N3 | 119.4° | 120.3° |
| C4 | N3 | C2 | 120.5° | 120.2° |
| C4 | N3 | HN3 | 119.7° | 119.9° |
| N3 | C2 | O2 | 119.9° | 119.5° |
| C2 | N3 | HN3 | 119.8° | 119.9° |
| H21 | C21 | H21A | 106.1° | 110.1° |
| H22 | C22 | H22A | 106.1° | 110.3° |
| H23 | C23 | H23A | 105.7° | 110.8° |
| H24 | C24 | H24A | 105.1° | 110.7° |
| H5' | C5' | H5'A | 107.4° | 109.5° |
| H2' | C2' | H2'A | 99.4° | 110.6° |
| H5M | C5M | H5MA | 109.4° | 109.5° |
| H5M | C5M | H5MB | 109.5° | 109.4° |
| H5MA | C5M | H5MB | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C22 | C21 | N25 | H21 | 120.0° | 119.4° |
| C22 | C21 | N25 | H21A | 121.6° | 119.3° |
| C21 | C22 | C23 | H22 | 120.0° | 118.9° |
| C21 | C22 | C23 | H22A | 121.7° | 118.9° |
| C21 | C22 | C23 | C24 | 8.5° | 22.0° |
| C22 | C21 | N25 | C24 | 36.8° | 25.3° |
| C22 | C21 | N25 | C5' | 154.1° | 145.8° |
| C22 | C21 | H21 | H21A | 121.8° | 121.2° |
| C21 | C22 | H22 | H22A | 121.8° | 122.1° |
| C21 | C22 | C23 | H23 | 128.5° | 140.3° |
| C21 | C22 | C23 | H23A | 113.4° | 96.4° |
| N25 | C21 | C22 | C23 | 16.8° | 1.2° |
| C21 | N25 | C24 | C23 | 42.2° | 39.2° |
| C21 | N25 | C24 | C5' | 116.7° | 120.5° |
| C21 | N25 | C5' | C4' | 140.6° | 170.0° |
| N25 | C21 | H21 | H21A | 121.8° | 121.2° |
| N25 | C21 | C22 | H22 | 136.8° | 120.2° |
| N25 | C21 | C22 | H22A | 104.9° | 117.7° |
| C21 | N25 | C24 | H24 | 77.8° | 79.2° |
| C21 | N25 | C24 | H24A | 164.4° | 157.6° |
| C21 | N25 | C5' | H5' | 20.6° | 50.0° |
| C21 | N25 | C5' | H5'A | 98.4° | 70.0° |
| C22 | C23 | C24 | H23 | 120.0° | 118.3° |
| C22 | C23 | C24 | H23A | 121.9° | 118.4° |
| C22 | C23 | C24 | N25 | 30.8° | 37.4° |
| C23 | C22 | C21 | H21 | 136.8° | 120.6° |
| C23 | C22 | C21 | H21A | 104.9° | 118.1° |
| C23 | C22 | H22 | H22A | 121.8° | 122.1° |
| C22 | C23 | H23 | H23A | 122.0° | 123.3° |
| C22 | C23 | C24 | H24 | 89.2° | 81.0° |
| C22 | C23 | C24 | H24A | 152.9° | 155.8° |
| C23 | C24 | N25 | H24 | 120.0° | 118.5° |
| C23 | C24 | N25 | H24A | 122.1° | 118.4° |
| C23 | C24 | N25 | C5' | 159.0° | 159.8° |
| C24 | C23 | C22 | H22 | 111.5° | 97.0° |
| C24 | C23 | C22 | H22A | 130.2° | 140.9° |
| C24 | C23 | H23 | H23A | 122.0° | 123.3° |
| C23 | C24 | H24 | H24A | 122.4° | 123.1° |
| C24 | N25 | C5' | C4' | 105.6° | 72.6° |
| C24 | N25 | C21 | H21 | 156.8° | 144.7° |
| C24 | N25 | C21 | H21A | 84.9° | 94.0° |
| N25 | C24 | C23 | H23 | 150.8° | 155.8° |
| N25 | C24 | C23 | H23A | 91.0° | 80.9° |
| N25 | C24 | H24 | H24A | 122.3° | 123.1° |
| C24 | N25 | C5' | H5' | 134.4° | 167.4° |
| C24 | N25 | C5' | H5'A | 15.4° | 47.4° |
| N25 | C5' | C4' | H5' | 120.0° | 120.0° |
| N25 | C5' | C4' | H5'A | 121.0° | 120.0° |
| N25 | C5' | C4' | O4' | 117.7° | 61.5° |
| N25 | C5' | C4' | C3' | 122.3° | 176.8° |
| C5' | N25 | C21 | H21 | 85.9° | 94.8° |
| C5' | N25 | C21 | H21A | 32.5° | 26.5° |
| C5' | N25 | C24 | H24 | 39.0° | 41.3° |
| C5' | N25 | C24 | H24A | 78.9° | 81.9° |
| N25 | C5' | H5' | H5'A | 121.1° | 120.0° |
| N25 | C5' | C4' | H4' | 1.4° | 60.7° |
| C5' | C4' | O4' | C3' | 125.7° | 118.8° |
| C5' | C4' | O4' | H4' | 112.6° | 122.2° |
| C5' | C4' | C3' | H4' | 112.8° | 122.3° |
| C5' | C4' | O4' | C1' | 178.5° | 159.4° |
| C5' | C4' | C3' | O3' | 95.6° | 98.5° |
| C5' | C4' | C3' | C2' | 148.7° | 142.8° |
| C4' | C5' | H5' | H5'A | 121.1° | 120.0° |
| C5' | C4' | C3' | H3' | 25.6° | 24.0° |
| O4' | C4' | C3' | H4' | 120.2° | 118.9° |
| O4' | C4' | C3' | O3' | 137.3° | 142.7° |
| O4' | C4' | C3' | C2' | 21.7° | 24.0° |
| C4' | O4' | C1' | C2' | 67.0° | 40.6° |
| C4' | O4' | C1' | N1 | 148.6° | 159.3° |
| O4' | C4' | C5' | H5' | 122.3° | 178.6° |
| O4' | C4' | C5' | H5'A | 3.3° | 58.5° |
| O4' | C4' | C3' | H3' | 101.5° | 94.8° |
| C4' | O4' | C1' | H1' | 51.5° | 78.3° |
| C3' | C4' | O4' | C1' | 52.8° | 40.5° |
| C4' | C3' | O3' | C2' | 110.7° | 114.7° |
| C4' | C3' | O3' | H3' | 125.3° | 122.6° |
| C4' | C3' | C2' | H3' | 124.8° | 118.7° |
| C4' | C3' | C2' | C1' | 17.2° | 0.0° |
| C3' | C4' | C5' | H5' | 2.3° | 63.2° |
| C3' | C4' | C5' | H5'A | 116.7° | 56.8° |
| C4' | C3' | O3' | HO3' | 50.4° | 180.0° |
| C4' | C3' | C2' | H2' | 137.1° | 118.6° |
| C4' | C3' | C2' | H2'A | 107.2° | 118.6° |
| O4' | C1' | C2' | C3' | 52.8° | 24.0° |
| O4' | C1' | C2' | N1 | 140.6° | 118.8° |
| O4' | C1' | C2' | H1' | 125.8° | 118.8° |
| O4' | C1' | N1 | H1' | 118.7° | 122.3° |
| O4' | C1' | N1 | C6 | 64.6° | 1.5° |
| O4' | C1' | N1 | C2 | 119.0° | 178.8° |
| C1' | O4' | C4' | H4' | 68.9° | 78.4° |
| O4' | C1' | C2' | H2' | 172.8° | 142.6° |
| O4' | C1' | C2' | H2'A | 71.5° | 94.6° |
| O3' | C3' | C2' | H3' | 121.5° | 122.6° |
| O3' | C3' | C2' | C1' | 96.6° | 118.6° |
| O3' | C3' | C4' | H4' | 17.2° | 23.8° |
| O3' | C3' | C2' | H2' | 23.4° | 0.0° |
| O3' | C3' | C2' | H2'A | 139.1° | 122.7° |
| C3' | C2' | C1' | H2' | 120.0° | 118.6° |
| C3' | C2' | C1' | H2'A | 124.4° | 118.6° |
| C3' | C2' | C1' | N1 | 166.6° | 142.8° |
| C2' | C3' | C4' | H4' | 98.5° | 94.9° |
| C2' | C3' | O3' | HO3' | 161.1° | 65.3° |
| C3' | C2' | H2' | H2'A | 125.6° | 122.7° |
| C3' | C2' | C1' | H1' | 72.9° | 94.8° |
| C2' | C1' | N1 | H1' | 107.1° | 122.3° |
| C2' | C1' | N1 | C6 | 161.1° | 116.9° |
| C2' | C1' | N1 | C2 | 15.3° | 63.5° |
| C1' | C2' | C3' | H3' | 141.9° | 118.7° |
| C1' | C2' | H2' | H2'A | 125.5° | 122.7° |
| C1' | N1 | C6 | C2 | 176.6° | 179.6° |
| C1' | N1 | C6 | C5 | 178.1° | 179.9° |
| C1' | N1 | C2 | N3 | 177.6° | 179.8° |
| C1' | N1 | C2 | O2 | 2.9° | 0.1° |
| N1 | C1' | C2' | H2' | 46.6° | 98.6° |
| N1 | C1' | C2' | H2'A | 69.1° | 24.2° |
| C1' | N1 | C6 | H6 | 1.9° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C5M | 179.2° | 180.0° |
| N1 | C6 | C5 | C4 | 0.8° | 0.0° |
| C6 | N1 | C2 | N3 | 1.5° | 0.6° |
| C6 | N1 | C2 | O2 | 179.1° | 179.7° |
| C6 | N1 | C1' | H1' | 54.0° | 120.8° |
| C2 | N1 | C6 | C5 | 1.5° | 0.3° |
| N1 | C2 | N3 | C4 | 0.7° | 0.6° |
| N1 | C2 | N3 | O2 | 179.5° | 179.7° |
| C2 | N1 | C1' | H1' | 122.4° | 58.8° |
| C2 | N1 | C6 | H6 | 178.5° | 179.7° |
| N1 | C2 | N3 | HN3 | 179.3° | 179.7° |
| C6 | C5 | C5M | C4 | 179.9° | 180.0° |
| C6 | C5 | C4 | O4 | 179.9° | 180.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.0° |
| C6 | C5 | C5M | H5M | 125.9° | 90.0° |
| C6 | C5 | C5M | H5MA | 5.9° | 150.0° |
| C6 | C5 | C5M | H5MB | 114.1° | 30.0° |
| C5M | C5 | C4 | O4 | 0.0° | 0.0° |
| C5M | C5 | C4 | N3 | 179.9° | 180.0° |
| C5M | C5 | C6 | H6 | 0.8° | 0.0° |
| C5 | C5M | H5M | H5MA | 120.0° | 120.0° |
| C5 | C5M | H5M | H5MB | 120.0° | 120.0° |
| C5 | C5M | H5MA | H5MB | 120.0° | 120.0° |
| C5 | C4 | O4 | N3 | 180.0° | 180.0° |
| C5 | C4 | N3 | C2 | 0.0° | 0.3° |
| C4 | C5 | C6 | H6 | 179.2° | 180.0° |
| C4 | C5 | C5M | H5M | 54.0° | 90.0° |
| C4 | C5 | C5M | H5MA | 174.0° | 30.0° |
| C4 | C5 | C5M | H5MB | 66.0° | 150.1° |
| C5 | C4 | N3 | HN3 | 180.0° | 180.0° |
| O4 | C4 | N3 | C2 | 179.9° | 179.7° |
| O4 | C4 | N3 | HN3 | 0.1° | 0.0° |
| C4 | N3 | C2 | HN3 | 180.0° | 179.7° |
| C4 | N3 | C2 | O2 | 179.8° | 179.7° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.0° |
| H21 | C21 | C22 | H22 | 103.2° | 120.5° |
| H21 | C21 | C22 | H22A | 15.1° | 1.7° |
| H21A | C21 | C22 | H22 | 15.1° | 0.9° |
| H21A | C21 | C22 | H22A | 133.4° | 123.0° |
| H22 | C22 | C23 | H23 | 8.5° | 21.3° |
| H22 | C22 | C23 | H23A | 126.6° | 144.7° |
| H22A | C22 | C23 | H23 | 109.8° | 100.8° |
| H22A | C22 | C23 | H23A | 8.3° | 22.6° |
| H23 | C23 | C24 | H24 | 30.8° | 37.3° |
| H23 | C23 | C24 | H24A | 87.1° | 85.8° |
| H23A | C23 | C24 | H24 | 149.0° | 160.6° |
| H23A | C23 | C24 | H24A | 31.1° | 37.5° |
| H5' | C5' | C4' | H4' | 118.6° | 59.2° |
| H5'A | C5' | C4' | H4' | 122.5° | 179.2° |
| H4' | C4' | C3' | H3' | 138.4° | 146.3° |
| H3' | C3' | O3' | HO3' | 74.9° | 57.5° |
| H3' | C3' | C2' | H2' | 98.1° | 122.6° |
| H3' | C3' | C2' | H2'A | 17.5° | 0.1° |
| H2' | C2' | C1' | H1' | 47.1° | 23.8° |
| H2'A | C2' | C1' | H1' | 162.7° | 146.5° |
| H5M | C5M | H5MA | H5MB | 120.0° | 120.0° |
