TTM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.48Å | |
| P | OP2 | sing | 1.62Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| P | OP3 | sing | 1.62Å | 11.38Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.43Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.08Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | N1 | sing | 1.43Å | 1.48Å | |
| C1' | C2' | sing | 1.52Å | 1.51Å | |
| C1' | H1' | sing | 1.10Å | 1.08Å | |
| N1 | C6 | sing | 1.38Å | 1.36Å | |
| N1 | C2 | sing | 1.40Å | 1.38Å | |
| C6 | C5 | doub | 1.34Å | 1.34Å | |
| C6 | H6 | sing | 1.09Å | 1.09Å | |
| C2 | O2 | doub | 1.24Å | 1.23Å | |
| C2 | N3 | sing | 1.42Å | 1.39Å | |
| N3 | C1Q | sing | 1.46Å | 1.38Å | |
| N3 | C4 | sing | 1.40Å | 1.39Å | |
| C1Q | C2Q | sing | 1.49Å | 1.43Å | |
| C1Q | H1Q | sing | 1.09Å | 1.09Å | |
| C1Q | H2Q | sing | 1.09Å | 1.09Å | |
| C2Q | H2 | sing | 1.10Å | 1.11Å | |
| C2Q | H3Q | sing | 1.10Å | 1.09Å | |
| C2Q | H4Q | sing | 1.10Å | 1.09Å | |
| C4 | O4 | doub | 1.23Å | 1.23Å | |
| C4 | C5 | sing | 1.49Å | 1.44Å | |
| C5 | C5M | sing | 1.50Å | 1.52Å | |
| C5M | H71 | sing | 1.09Å | 1.09Å | |
| C5M | H72 | sing | 1.09Å | 1.09Å | |
| C5M | H73 | sing | 1.09Å | 1.09Å | |
| C2' | C3' | sing | 1.51Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.4° | 115.3° |
| OP1 | P | O5' | 109.0° | 115.0° |
| OP1 | P | OP3 | 106.4° | 115.0° |
| OP2 | P | O5' | 107.5° | 103.7° |
| OP2 | P | OP3 | 75.1° | 103.3° |
| P | OP2 | HOP2 | 119.4° | 118.9° |
| O5' | P | OP3 | 136.3° | 102.9° |
| P | O5' | C5' | 121.5° | 118.5° |
| P | OP3 | HOP3 | 106.4° | 118.9° |
| O5' | C5' | C4' | 112.6° | 108.9° |
| O5' | C5' | H5' | 108.5° | 109.0° |
| O5' | C5' | H5'' | 111.1° | 108.9° |
| C4' | C5' | H5' | 110.4° | 110.3° |
| C4' | C5' | H5'' | 103.9° | 110.3° |
| C5' | C4' | O4' | 109.0° | 107.9° |
| C5' | C4' | C3' | 115.9° | 112.9° |
| C5' | C4' | H4' | 110.4° | 109.5° |
| H5' | C5' | H5'' | 110.3° | 109.3° |
| O4' | C4' | C3' | 104.9° | 106.2° |
| O4' | C4' | H4' | 109.2° | 107.9° |
| C4' | O4' | C1' | 104.3° | 109.3° |
| C3' | C4' | H4' | 107.1° | 112.2° |
| C4' | C3' | C2' | 98.3° | 103.1° |
| C4' | C3' | O3' | 114.3° | 109.9° |
| C4' | C3' | H3' | 112.9° | 113.5° |
| O4' | C1' | N1 | 112.3° | 109.3° |
| O4' | C1' | C2' | 102.3° | 107.4° |
| O4' | C1' | H1' | 105.0° | 108.0° |
| N1 | C1' | C2' | 117.2° | 112.8° |
| N1 | C1' | H1' | 113.1° | 107.8° |
| C1' | N1 | C6 | 120.4° | 118.8° |
| C1' | N1 | C2 | 118.0° | 118.9° |
| C2' | C1' | H1' | 105.7° | 111.5° |
| C1' | C2' | C3' | 91.7° | 102.5° |
| C1' | C2' | H2' | 112.6° | 110.6° |
| C1' | C2' | H2'' | 111.8° | 111.7° |
| C6 | N1 | C2 | 121.5° | 122.3° |
| N1 | C6 | C5 | 121.1° | 123.7° |
| N1 | C6 | H6 | 118.9° | 115.6° |
| N1 | C2 | O2 | 121.1° | 123.0° |
| N1 | C2 | N3 | 117.2° | 114.5° |
| C5 | C6 | H6 | 120.0° | 120.7° |
| C6 | C5 | C4 | 121.5° | 118.8° |
| C6 | C5 | C5M | 119.4° | 123.2° |
| O2 | C2 | N3 | 121.7° | 122.5° |
| C2 | N3 | C1Q | 118.2° | 116.3° |
| C2 | N3 | C4 | 123.7° | 125.5° |
| C1Q | N3 | C4 | 118.1° | 118.2° |
| N3 | C1Q | C2Q | 114.5° | 111.2° |
| N3 | C1Q | H1Q | 106.8° | 107.7° |
| N3 | C1Q | H2Q | 111.9° | 107.8° |
| N3 | C4 | O4 | 120.8° | 125.1° |
| N3 | C4 | C5 | 114.9° | 115.2° |
| C2Q | C1Q | H1Q | 108.1° | 110.5° |
| C2Q | C1Q | H2Q | 107.2° | 110.8° |
| C1Q | C2Q | H2 | 114.5° | 110.9° |
| C1Q | C2Q | H3Q | 100.2° | 110.9° |
| C1Q | C2Q | H4Q | 97.6° | 109.8° |
| H1Q | C1Q | H2Q | 108.0° | 108.8° |
| H2 | C2Q | H3Q | 132.0° | 109.2° |
| H2 | C2Q | H4Q | 39.1° | 108.0° |
| H3Q | C2Q | H4Q | 107.2° | 108.0° |
| O4 | C4 | C5 | 124.3° | 119.7° |
| C4 | C5 | C5M | 119.1° | 118.0° |
| C5 | C5M | H71 | 109.2° | 109.7° |
| C5 | C5M | H72 | 109.6° | 109.7° |
| C5 | C5M | H73 | 109.0° | 109.7° |
| H71 | C5M | H72 | 109.3° | 109.4° |
| H71 | C5M | H73 | 109.7° | 109.4° |
| H72 | C5M | H73 | 110.0° | 109.0° |
| C3' | C2' | H2' | 114.3° | 109.7° |
| C3' | C2' | H2'' | 112.4° | 114.1° |
| C2' | C3' | O3' | 106.5° | 109.7° |
| C2' | C3' | H3' | 114.7° | 113.2° |
| H2' | C2' | H2'' | 112.5° | 108.3° |
| O3' | C3' | H3' | 109.6° | 107.4° |
| C3' | O3' | HO3' | 114.3° | 107.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 124.8° | 126.6° |
| OP1 | P | OP2 | OP3 | 100.7° | 126.3° |
| OP1 | P | O5' | OP3 | 142.5° | 125.8° |
| OP1 | P | OP2 | HOP2 | 179.9° | 48.8° |
| OP1 | P | O5' | C5' | 16.1° | 179.9° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 86.6° | 107.4° |
| OP2 | P | O5' | C5' | 147.0° | 53.2° |
| OP2 | P | OP3 | HOP3 | 63.1° | 78.5° |
| O5' | P | OP2 | HOP2 | 55.2° | 175.4° |
| P | O5' | C5' | C4' | 45.1° | 180.0° |
| P | O5' | C5' | H5' | 167.5° | 59.6° |
| P | O5' | C5' | H5'' | 71.0° | 59.6° |
| O5' | P | OP3 | HOP3 | 36.8° | 173.8° |
| OP3 | P | OP2 | HOP2 | 79.2° | 77.5° |
| OP3 | P | O5' | C5' | 126.4° | 54.2° |
| O5' | C5' | C4' | H5' | 121.4° | 119.6° |
| O5' | C5' | C4' | H5'' | 120.4° | 119.5° |
| O5' | C5' | H5' | H5'' | 121.9° | 119.0° |
| O5' | C5' | C4' | O4' | 59.5° | 62.4° |
| O5' | C5' | C4' | C3' | 177.6° | 179.5° |
| O5' | C5' | C4' | H4' | 60.5° | 54.7° |
| C4' | C5' | H5' | H5'' | 114.2° | 121.5° |
| C5' | C4' | O4' | C3' | 124.8° | 121.4° |
| C5' | C4' | O4' | H4' | 120.7° | 118.2° |
| C5' | C4' | C3' | H4' | 123.7° | 124.3° |
| C5' | C4' | O4' | C1' | 125.9° | 108.6° |
| C5' | C4' | C3' | C2' | 84.7° | 88.8° |
| C5' | C4' | C3' | O3' | 162.9° | 154.2° |
| C5' | C4' | C3' | H3' | 36.7° | 34.0° |
| H5' | C5' | C4' | O4' | 61.9° | 57.1° |
| H5' | C5' | C4' | C3' | 56.2° | 60.0° |
| H5' | C5' | C4' | H4' | 178.1° | 174.3° |
| H5'' | C5' | C4' | O4' | 179.9° | 178.1° |
| H5'' | C5' | C4' | C3' | 62.1° | 61.0° |
| H5'' | C5' | C4' | H4' | 59.9° | 64.8° |
| O4' | C4' | C3' | H4' | 116.0° | 117.6° |
| C4' | O4' | C1' | N1 | 164.6° | 131.7° |
| C4' | O4' | C1' | C2' | 38.1° | 9.0° |
| C4' | O4' | C1' | H1' | 72.1° | 111.3° |
| O4' | C4' | C3' | C2' | 35.5° | 29.2° |
| O4' | C4' | C3' | O3' | 76.8° | 87.7° |
| O4' | C4' | C3' | H3' | 156.9° | 152.1° |
| C3' | C4' | O4' | C1' | 1.1° | 12.7° |
| C4' | C3' | C2' | C1' | 54.3° | 33.4° |
| C4' | C3' | C2' | O3' | 118.5° | 117.1° |
| C4' | C3' | C2' | H3' | 120.1° | 123.0° |
| C4' | C3' | C2' | H2' | 61.5° | 84.1° |
| C4' | C3' | C2' | H2'' | 168.7° | 154.3° |
| C4' | C3' | O3' | H3' | 127.9° | 123.9° |
| C4' | C3' | O3' | HO3' | 179.9° | 88.1° |
| H4' | C4' | O4' | C1' | 113.4° | 133.2° |
| H4' | C4' | C3' | C2' | 151.6° | 146.9° |
| H4' | C4' | C3' | O3' | 39.2° | 29.9° |
| H4' | C4' | C3' | H3' | 87.0° | 90.3° |
| O4' | C1' | N1 | C2' | 118.1° | 119.4° |
| O4' | C1' | N1 | H1' | 118.6° | 117.1° |
| O4' | C1' | C2' | H1' | 109.7° | 118.1° |
| O4' | C1' | N1 | C6 | 33.5° | 32.9° |
| O4' | C1' | N1 | C2 | 145.9° | 147.1° |
| O4' | C1' | C2' | C3' | 58.2° | 26.9° |
| O4' | C1' | C2' | H2' | 59.1° | 90.0° |
| O4' | C1' | C2' | H2'' | 173.1° | 149.4° |
| N1 | C1' | C2' | H1' | 127.0° | 121.4° |
| C1' | N1 | C6 | C2 | 179.4° | 180.0° |
| C1' | N1 | C6 | C5 | 179.2° | 180.0° |
| C1' | N1 | C6 | H6 | 1.1° | 0.0° |
| C1' | N1 | C2 | O2 | 1.5° | 0.2° |
| C1' | N1 | C2 | N3 | 179.2° | 179.9° |
| N1 | C1' | C2' | C3' | 178.5° | 147.4° |
| N1 | C1' | C2' | H2' | 64.2° | 30.6° |
| N1 | C1' | C2' | H2'' | 63.5° | 90.1° |
| C2' | C1' | N1 | C6 | 84.6° | 86.5° |
| C2' | C1' | N1 | C2 | 96.0° | 93.5° |
| C1' | C2' | C3' | H2' | 115.8° | 117.5° |
| C1' | C2' | C3' | H2'' | 114.4° | 120.8° |
| C1' | C2' | H2' | H2'' | 127.4° | 122.7° |
| C1' | C2' | C3' | O3' | 64.2° | 83.6° |
| C1' | C2' | C3' | H3' | 174.4° | 156.4° |
| H1' | C1' | N1 | C6 | 152.1° | 150.0° |
| H1' | C1' | N1 | C2 | 27.3° | 30.0° |
| H1' | C1' | C2' | C3' | 51.5° | 91.2° |
| H1' | C1' | C2' | H2' | 168.8° | 151.9° |
| H1' | C1' | C2' | H2'' | 63.4° | 31.3° |
| N1 | C6 | C5 | H6 | 179.6° | 180.0° |
| C6 | N1 | C2 | O2 | 179.1° | 179.8° |
| C6 | N1 | C2 | N3 | 0.2° | 0.1° |
| N1 | C6 | C5 | C4 | 0.0° | 0.0° |
| N1 | C6 | C5 | C5M | 179.8° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| C2 | N1 | C6 | H6 | 179.5° | 180.0° |
| N1 | C2 | O2 | N3 | 179.3° | 179.9° |
| N1 | C2 | N3 | C1Q | 179.8° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.2° |
| C6 | C5 | C4 | N3 | 0.2° | 0.1° |
| C6 | C5 | C4 | O4 | 179.6° | 179.9° |
| C6 | C5 | C4 | C5M | 179.8° | 180.0° |
| C6 | C5 | C5M | H71 | 63.4° | 64.4° |
| C6 | C5 | C5M | H72 | 56.3° | 55.8° |
| C6 | C5 | C5M | H73 | 176.8° | 175.4° |
| H6 | C6 | C5 | C4 | 179.7° | 180.0° |
| H6 | C6 | C5 | C5M | 0.1° | 0.0° |
| O2 | C2 | N3 | C1Q | 0.9° | 0.1° |
| O2 | C2 | N3 | C4 | 179.2° | 179.7° |
| C2 | N3 | C1Q | C4 | 179.8° | 179.8° |
| C2 | N3 | C1Q | C2Q | 110.0° | 89.8° |
| C2 | N3 | C1Q | H1Q | 130.3° | 149.0° |
| C2 | N3 | C1Q | H2Q | 12.2° | 31.7° |
| C2 | N3 | C4 | O4 | 179.6° | 179.8° |
| C2 | N3 | C4 | C5 | 0.2° | 0.2° |
| N3 | C1Q | C2Q | H1Q | 119.0° | 119.6° |
| N3 | C1Q | C2Q | H2Q | 124.8° | 119.8° |
| N3 | C1Q | H1Q | H2Q | 120.5° | 116.6° |
| N3 | C1Q | C2Q | H2 | 180.0° | 61.4° |
| N3 | C1Q | C2Q | H3Q | 34.0° | 60.1° |
| N3 | C1Q | C2Q | H4Q | 143.1° | 179.4° |
| C1Q | N3 | C4 | O4 | 0.2° | 0.0° |
| C1Q | N3 | C4 | C5 | 180.0° | 180.0° |
| C4 | N3 | C1Q | C2Q | 70.1° | 90.0° |
| C4 | N3 | C1Q | H1Q | 49.6° | 31.2° |
| C4 | N3 | C1Q | H2Q | 167.6° | 148.5° |
| N3 | C4 | O4 | C5 | 179.7° | 180.0° |
| N3 | C4 | C5 | C5M | 179.6° | 179.9° |
| C2Q | C1Q | H1Q | H2Q | 115.7° | 121.8° |
| C1Q | C2Q | H2 | H3Q | 132.2° | 122.5° |
| C1Q | C2Q | H2 | H4Q | 70.8° | 120.4° |
| C1Q | C2Q | H3Q | H4Q | 101.4° | 120.4° |
| H1Q | C1Q | C2Q | H2 | 61.1° | 179.1° |
| H1Q | C1Q | C2Q | H3Q | 153.0° | 59.5° |
| H1Q | C1Q | C2Q | H4Q | 98.0° | 59.8° |
| H2Q | C1Q | C2Q | H2 | 55.2° | 58.4° |
| H2Q | C1Q | C2Q | H3Q | 90.8° | 179.9° |
| H2Q | C1Q | C2Q | H4Q | 18.3° | 60.8° |
| H2 | C2Q | H3Q | H4Q | 35.4° | 117.2° |
| O4 | C4 | C5 | C5M | 0.6° | 0.1° |
| C4 | C5 | C5M | H71 | 116.5° | 115.6° |
| C4 | C5 | C5M | H72 | 123.9° | 124.3° |
| C4 | C5 | C5M | H73 | 3.4° | 4.6° |
| C5 | C5M | H71 | H72 | 119.9° | 120.3° |
| C5 | C5M | H71 | H73 | 119.4° | 120.3° |
| C5 | C5M | H72 | H73 | 119.8° | 120.0° |
| H71 | C5M | H72 | H73 | 120.5° | 119.6° |
| C3' | C2' | H2' | H2'' | 129.7° | 125.1° |
| C2' | C3' | O3' | H3' | 124.7° | 123.4° |
| C2' | C3' | O3' | HO3' | 72.5° | 159.2° |
| H2' | C2' | C3' | O3' | 180.0° | 158.9° |
| H2' | C2' | C3' | H3' | 58.5° | 38.9° |
| H2'' | C2' | C3' | O3' | 50.3° | 37.2° |
| H2'' | C2' | C3' | H3' | 71.2° | 82.7° |
| H3' | C3' | O3' | HO3' | 52.1° | 35.8° |
