Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

TTD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.50Å1.49Å
POP2sing1.62Å1.49Å
POP3sing1.62Å60.86Å
PO5'sing1.62Å1.60Å
OP2HOP2sing0.98Å0.95Å
OP3HOP3sing0.98Å0.95Å
O5'C5'sing1.42Å1.43Å
C5'C4Rsing1.52Å1.55Å
C5'H5'sing1.09Å1.11Å
C5'H5''sing1.09Å1.12Å
C4RO4'sing1.44Å1.43Å
C4RC3Rsing1.52Å1.55Å
C4RH4Rsing1.10Å1.12Å
O4'C1'sing1.45Å1.44Å
C3RO3Rsing1.41Å1.49Å
C3RC2'sing1.51Å1.57Å
C3RH3Rsing1.09Å1.11Å
O3RPBsing1.62Å1.64Å
C2'C1'sing1.52Å1.54Å
C2'H2'sing1.09Å1.11Å
C2'H2''sing1.10Å1.12Å
C1'N1sing1.48Å1.53Å
C1'H1'sing1.09Å1.12Å
N1C2sing1.41Å1.43Å
N1C6sing1.49Å1.45Å
C2O2doub1.23Å1.23Å
C2N3sing1.40Å1.33Å
N3C4sing1.40Å1.36Å
N3HN3sing1.02Å1.02Å
C4O4doub1.24Å1.22Å
C4C5sing1.55Å1.50Å
C5C5Asing1.52Å1.62Å
C5C6sing1.53Å1.43Å
C5C5Tsing1.56Å1.58Å
C5AH5A1sing1.09Å1.11Å
C5AH5A2sing1.09Å1.12Å
C5AH5A3sing1.09Å1.11Å
C6C6Tsing1.56Å1.62Å
C6H6sing1.10Å1.11Å
PBO5Pdoub1.50Å1.46Å
PBO4Psing1.62Å1.52Å
PBO5Rsing1.62Å1.63Å
O4PH4Psing0.98Å0.95Å
O5RC5Rsing1.42Å1.45Å
C5RC4'sing1.52Å1.51Å
C5RH5R1sing1.09Å1.11Å
C5RH5R2sing1.09Å1.11Å
O4RC1Rsing1.44Å1.36Å
O4RC4'sing1.44Å1.41Å
C2RC1Rsing1.54Å1.50Å
C2RC3'sing1.52Å1.50Å
C2RH2R1sing1.09Å1.12Å
C2RH2R2sing1.10Å1.11Å
C1RN1Tsing1.47Å1.51Å
C1RH1Rsing1.10Å1.12Å
N1TC2Tsing1.41Å1.39Å
N1TC6Tsing1.50Å1.48Å
C2TO2Tdoub1.24Å1.21Å
C2TN3Tsing1.40Å1.34Å
N3TC4Tsing1.39Å1.38Å
N3THTsing1.02Å1.02Å
C4TO4Tdoub1.23Å1.23Å
C4TC5Tsing1.53Å1.51Å
C5TC5Msing1.52Å1.59Å
C5TC6Tsing1.55Å1.32Å
C5MH71sing1.09Å1.12Å
C5MH72sing1.09Å1.11Å
C5MH73sing1.09Å1.11Å
C6TH6Tsing1.10Å1.11Å
C4'C3'sing1.51Å1.53Å
C4'H4'sing1.10Å1.12Å
C3'O3'sing1.41Å1.43Å
C3'H1sing1.10Å1.12Å
O3'HO3'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2119.6°115.3°
OP1POP381.5°115.0°
OP1PO5'108.6°115.0°
OP2POP3122.5°103.3°
OP2PO5'108.2°103.7°
POP2HOP2119.6°118.9°
OP3PO5'27.2°102.9°
POP3HOP381.5°119.0°
PO5'C5'121.2°118.5°
O5'C5'C4R110.6°108.7°
O5'C5'H5'111.8°109.2°
O5'C5'H5''111.8°109.2°
C4RC5'H5'111.8°110.1°
C4RC5'H5''111.8°110.1°
C5'C4RO4'114.4°110.3°
C5'C4RC3R108.9°114.1°
C5'C4RH4R106.8°108.4°
H5'C5'H5''98.6°109.6°
O4'C4RC3R110.3°104.7°
O4'C4RH4R105.3°108.1°
C4RO4'C1'102.7°108.1°
C3RC4RH4R111.2°111.1°
C4RC3RO3R101.7°113.1°
C4RC3RC2'98.1°99.9°
C4RC3RH3R125.1°110.6°
O4'C1'C2'99.5°106.1°
O4'C1'N199.5°110.8°
O4'C1'H1'127.7°107.0°
O3RC3RC2'120.2°111.8°
O3RC3RH3R104.9°110.8°
C3RO3RPB135.3°119.6°
C2'C3RH3R108.1°110.3°
C3RC2'C1'101.9°101.8°
C3RC2'H2'115.2°115.5°
C3RC2'H2''115.1°109.1°
O3RPBO5P126.1°114.2°
O3RPBO4P102.9°103.6°
O3RPBO5R91.4°105.2°
C1'C2'H2'115.1°114.6°
C1'C2'H2''115.1°110.1°
C2'C1'N1124.9°114.4°
C2'C1'H1'103.9°109.8°
H2'C2'H2''95.4°105.8°
N1C1'H1'103.9°108.5°
C1'N1C2109.0°117.2°
C1'N1C6130.6°119.8°
C2N1C6120.4°122.3°
N1C2O2122.8°123.9°
N1C2N3117.8°115.4°
N1C6C5119.2°113.0°
N1C6C6T119.9°122.0°
N1C6H690.7°111.3°
O2C2N3119.3°120.6°
C2N3C4127.7°128.6°
C2N3HN3114.7°115.3°
C4N3HN3117.6°115.3°
N3C4O4117.4°121.4°
N3C4C5117.1°114.6°
O4C4C5125.4°124.0°
C4C5C5A98.0°110.1°
C4C5C6117.7°116.6°
C4C5C5T139.4°118.2°
C5AC5C6107.9°108.7°
C5AC5C5T110.1°114.6°
C5C5AH5A198.0°110.4°
C5C5AH5A2116.6°110.9°
C5C5AH5A3116.6°110.4°
C6C5C5T81.4°86.7°
C5C6C6T90.6°88.7°
C5C6H6120.0°109.2°
C5C5TC4T98.2°116.7°
C5C5TC5M113.9°112.7°
C5C5TC6T96.5°88.1°
H5A1C5AH5A2116.7°108.4°
H5A1C5AH5A3116.7°108.3°
H5A2C5AH5A393.7°108.4°
C6TC6H6119.4°110.4°
C6C6TN1T122.5°121.1°
C6C6TC5T83.3°86.1°
C6C6TH6T123.4°112.6°
O5PPBO4P128.7°114.1°
O5PPBO5R80.6°115.3°
O4PPBO5R84.2°103.1°
PBO4PH4P102.9°118.8°
PBO5RC5R122.3°118.7°
O5RC5RC4'112.2°110.7°
O5RC5RH5R1111.2°109.2°
O5RC5RH5R2111.2°108.2°
C4'C5RH5R1111.2°109.8°
C4'C5RH5R2111.2°110.7°
C5RC4'O4R106.7°111.9°
C5RC4'C3'107.6°115.7°
C5RC4'H4'111.9°107.5°
H5R1C5RH5R299.2°108.3°
C1RO4RC4'100.3°106.7°
O4RC1RC2R106.2°106.0°
O4RC1RN1T116.4°113.5°
O4RC1RH1R108.0°107.6°
O4RC4'C3'107.7°102.9°
O4RC4'H4'111.8°108.1°
C1RC2RC3'96.2°103.9°
C1RC2RH2R1117.4°114.2°
C1RC2RH2R2117.4°110.0°
C2RC1RN1T112.0°112.4°
C2RC1RH1R112.7°109.6°
C3'C2RH2R1117.3°111.4°
C3'C2RH2R2117.4°111.0°
C2RC3'C4'102.7°101.0°
C2RC3'O3'112.5°112.3°
C2RC3'H1112.5°109.9°
H2R1C2RH2R293.0°106.5°
N1TC1RH1R101.7°107.6°
C1RN1TC2T110.2°114.6°
C1RN1TC6T130.2°119.9°
C2TN1TC6T119.5°124.0°
N1TC2TO2T124.3°123.5°
N1TC2TN3T117.8°116.7°
N1TC6TC5T121.6°113.3°
N1TC6TH6T86.6°109.8°
O2TC2TN3T117.9°119.7°
C2TN3TC4T126.3°129.2°
C2TN3THT115.3°115.3°
C4TN3THT118.4°115.5°
N3TC4TO4T113.4°122.0°
N3TC4TC5T116.4°113.9°
O4TC4TC5T130.2°124.0°
C4TC5TC5M106.0°109.2°
C4TC5TC6T118.3°118.5°
C5MC5TC6T121.2°110.2°
C5TC5MH71113.9°110.7°
C5TC5MH72110.6°110.8°
C5TC5MH73110.6°110.2°
C5TC6TH6T124.2°112.0°
H71C5MH72110.6°108.3°
H71C5MH73110.6°108.3°
H72C5MH7399.7°108.4°
C3'C4'H4'111.0°110.6°
C4'C3'O3'110.7°111.8°
C4'C3'H1114.2°112.2°
O3'C3'H1104.6°109.5°
C3'O3'HO3'112.5°106.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP399.2°126.3°
OP1POP2O5'125.0°126.6°
OP1POP3O5'175.7°125.8°
OP1POP2HOP2180.0°48.8°
OP1POP3HOP3180.0°48.1°
OP1PO5'C5'47.2°180.0°
OP2POP3O5'64.5°107.7°
OP2POP3HOP360.2°78.4°
OP2PO5'C5'84.1°53.2°
OP3POP2HOP280.7°77.4°
OP3PO5'C5'42.7°54.2°
O5'POP2HOP255.0°175.4°
O5'POP3HOP34.3°173.9°
PO5'C5'C4R179.3°180.0°
PO5'C5'H5'54.0°59.9°
PO5'C5'H5''55.5°59.8°
O5'C5'C4RH5'125.3°119.5°
O5'C5'C4RH5''125.3°119.5°
O5'C5'H5'H5''117.7°119.5°
O5'C5'C4RO4'91.2°62.0°
O5'C5'C4RC3R32.7°179.5°
O5'C5'C4RH4R152.8°56.1°
C4RC5'H5'H5''117.6°121.3°
C5'C4RO4'C3R123.1°123.2°
C5'C4RO4'H4R116.9°118.3°
C5'C4RC3RH4R117.4°122.9°
C5'C4RO4'C1'155.4°146.5°
C5'C4RC3RO3R109.8°79.6°
C5'C4RC3RC2'126.9°161.4°
C5'C4RC3RH3R8.0°45.2°
H5'C5'C4RO4'143.6°57.5°
H5'C5'C4RC3R92.6°60.0°
H5'C5'C4RH4R27.5°175.7°
H5''C5'C4RO4'34.1°178.5°
H5''C5'C4RC3R158.0°61.0°
H5''C5'C4RH4R81.9°63.4°
O4'C4RC3RH4R116.4°116.4°
O4'C4RC3RO3R124.0°159.7°
O4'C4RC3RC2'0.7°40.7°
O4'C4RC3RH3R118.2°75.4°
C4RO4'C1'C2'49.8°3.9°
C4RO4'C1'N1177.9°120.9°
C4RO4'C1'H1'66.1°121.0°
C3RC4RO4'C1'32.4°23.3°
C4RC3RO3RC2'106.7°111.8°
C4RC3RO3RH3R131.5°124.8°
C4RC3RC2'H3R131.1°116.4°
C4RC3RO3RPB173.7°126.0°
C4RC3RC2'C1'28.8°41.9°
C4RC3RC2'H2'96.5°166.6°
C4RC3RC2'H2''154.0°74.5°
H4RC4RO4'C1'87.6°95.2°
H4RC4RC3RO3R7.6°43.3°
H4RC4RC3RC2'115.7°75.7°
H4RC4RC3RH3R125.4°168.1°
O4'C1'C2'C3R49.5°29.4°
O4'C1'C2'N1108.8°122.5°
O4'C1'C2'H1'132.9°115.2°
O4'C1'C2'H2'75.8°154.8°
O4'C1'C2'H2''174.8°86.2°
O4'C1'N1H1'132.9°117.2°
O4'C1'N1C270.4°134.8°
O4'C1'N1C6109.2°35.3°
O3RC3RC2'H3R120.3°123.7°
O3RC3RC2'C1'79.9°161.8°
O3RC3RC2'H2'154.9°73.4°
O3RC3RC2'H2''45.4°45.5°
C3RO3RPBO5P11.8°171.7°
C3RO3RPBO4P175.6°63.6°
C3RO3RPBO5R91.2°44.3°
C2'C3RO3RPB79.6°122.2°
C3RC2'C1'H2'125.3°125.4°
C3RC2'C1'H2''125.3°115.6°
C3RC2'H2'H2''121.0°120.7°
C3RC2'C1'N1158.3°93.1°
C3RC2'C1'H1'83.4°144.6°
H3RC3RO3RPB42.2°1.2°
H3RC3RC2'C1'159.9°74.5°
H3RC3RC2'H2'34.6°50.3°
H3RC3RC2'H2''74.9°169.2°
O3RPBO5PO4P159.6°118.9°
O3RPBO5PO5R84.9°122.0°
O3RPBO4PO5R90.1°109.4°
O3RPBO4PH4P180.0°178.0°
O3RPBO5RC5R81.3°69.5°
C1'C2'H2'H2''120.9°121.4°
C2'C1'N1H1'118.3°122.9°
C2'C1'N1C2179.2°105.3°
C2'C1'N1C60.4°84.5°
H2'C2'C1'N133.0°32.3°
H2'C2'C1'H1'151.3°90.0°
H2''C2'C1'N176.4°151.3°
H2''C2'C1'H1'41.9°29.0°
C1'N1C2C6179.7°169.9°
C1'N1C2O20.8°21.8°
C1'N1C2N3178.9°153.6°
C1'N1C6C5177.4°134.8°
C1'N1C6C6T73.1°121.6°
C1'N1C6H651.9°11.5°
H1'C1'N1C262.5°17.6°
H1'C1'N1C6117.9°152.5°
N1C2O2N3179.7°175.2°
N1C2N3C40.5°10.8°
N1C2N3HN3179.5°179.4°
C2N1C6C52.2°34.9°
C2N1C6C6T107.4°68.8°
C2N1C6H6127.7°158.1°
C6N1C2O2179.6°168.2°
C6N1C2N30.8°16.4°
N1C6C5C42.4°28.5°
N1C6C5C5A107.2°96.6°
N1C6C5C6T125.3°124.5°
N1C6C5H6109.9°124.4°
N1C6C5C5T144.3°148.5°
N1C6C6TH6109.9°133.5°
N1C6C6TN1T24.3°25.9°
N1C6C6TC5T147.7°140.8°
N1C6C6TH6T85.4°107.0°
O2C2N3C4179.2°164.8°
O2C2N3HN30.8°3.8°
C2N3C4HN3180.0°168.6°
C2N3C4O4179.5°164.6°
C2N3C4C50.2°14.8°
N3C4O4C5179.7°179.3°
N3C4C5C5A113.9°117.8°
N3C4C5C61.3°6.6°
N3C4C5C5T111.9°107.9°
HN3N3C4O40.5°4.0°
HN3N3C4C5179.8°176.6°
O4C4C5C5A65.8°61.6°
O4C4C5C6179.1°174.1°
O4C4C5C5T68.5°72.8°
C4C5C5AC6122.6°128.8°
C4C5C5AC5T150.2°136.1°
C4C5C6C5T141.9°120.0°
C4C5C5AH5A1180.0°36.3°
C4C5C5AH5A254.7°83.8°
C4C5C5AH5A354.7°156.0°
C4C5C6C6T122.9°96.0°
C4C5C6H6112.2°152.9°
C4C5C5TC4T20.7°26.9°
C4C5C5TC5M132.4°154.5°
C4C5C5TC6T99.2°94.3°
C5AC5C6C5T108.4°114.9°
C5C5AH5A1H5A2125.3°121.6°
C5C5AH5A1H5A3125.3°121.0°
C5C5AH5A2H5A3122.3°121.4°
C5AC5C6C6T127.5°138.9°
C5AC5C6H62.6°27.8°
C5AC5C5TC4T110.2°105.5°
C5AC5C5TC5M1.4°22.1°
C5AC5C5TC6T129.8°133.3°
C6C5C5AH5A157.4°165.1°
C6C5C5AH5A2177.3°45.0°
C6C5C5AH5A367.9°75.2°
C5C6C6TH6125.4°110.0°
C5C6C6TN1T100.4°90.7°
C6C5C5TC4T143.8°145.4°
C6C5C5TC5M104.5°87.0°
C6C5C5TC6T23.9°24.2°
C5C6C6TH6T149.9°136.4°
C5TC5C5AH5A129.8°99.8°
C5TC5C5AH5A295.5°140.1°
C5TC5C5AH5A3155.1°19.9°
C5TC5C6H6105.8°87.1°
C5C5TC6TN1T103.5°98.6°
C5C5TC4TN3T102.2°80.2°
C5C5TC4TO4T77.8°98.7°
C5C5TC4TC5M117.9°129.3°
C5C5TC4TC6T102.0°103.3°
C5C5TC5MC6T114.4°96.7°
C5C5TC5MH71180.0°76.8°
C5C5TC5MH7254.8°43.4°
C5C5TC5MH7354.7°163.4°
C5C5TC6TH6T146.9°136.6°
H5A1C5AH5A2H5A3122.4°117.3°
C6C6TN1TC1R77.6°89.4°
C6C6TN1TC2T102.8°105.3°
C6C6TN1TC5T103.3°99.9°
C6C6TN1TH6T128.0°134.1°
C6C6TC5TC4T123.8°143.3°
C6C6TC5TC5M102.3°89.8°
C6C6TC5TH6T126.1°112.9°
H6C6C6TN1T134.1°159.3°
H6C6C6TC5T102.4°85.8°
H6C6C6TH6T24.5°26.5°
O5PPBO4PO5R73.1°125.8°
O5PPBO4PH4P16.8°53.2°
O5PPBO5RC5R45.0°57.2°
O4PPBO5RC5R175.9°177.8°
O5RPBO4PH4P89.8°72.6°
PBO5RC5RC4'156.0°155.0°
PBO5RC5RH5R130.8°34.0°
PBO5RC5RH5R278.8°83.6°
O5RC5RC4'H5R1125.3°120.6°
O5RC5RC4'H5R2125.2°119.9°
O5RC5RH5R1H5R2117.1°117.6°
O5RC5RC4'O4R105.2°61.0°
O5RC5RC4'C3'139.5°56.5°
O5RC5RC4'H4'17.4°179.5°
C4'C5RH5R1H5R2117.1°120.9°
C5RC4'O4RC1R145.3°165.7°
C5RC4'O4RC3'115.3°124.8°
C5RC4'O4RH4'122.6°118.2°
C5RC4'C3'C2R114.2°165.8°
C5RC4'C3'H4'122.7°122.4°
C5RC4'C3'O3'125.6°74.6°
C5RC4'C3'H17.9°48.8°
H5R1C5RC4'O4R20.1°59.7°
H5R1C5RC4'C3'95.2°177.1°
H5R1C5RC4'H4'142.6°58.8°
H5R2C5RC4'O4R129.6°179.1°
H5R2C5RC4'C3'14.3°63.5°
H5R2C5RC4'H4'107.8°60.6°
O4RC1RC2RN1T128.0°124.6°
O4RC1RC2RH1R118.1°115.9°
O4RC1RC2RC3'50.3°6.7°
O4RC1RC2RH2R1175.5°128.3°
O4RC1RC2RH2R275.0°112.1°
O4RC1RN1TH1R117.0°118.9°
O4RC1RN1TC2T145.6°173.9°
O4RC1RN1TC6T34.8°19.5°
C1RO4RC4'C3'30.1°40.9°
C1RO4RC4'H4'92.0°76.1°
C4'O4RC1RC2R51.1°21.1°
O4RC4'C3'C2R0.5°43.4°
C4'O4RC1RN1T176.5°145.0°
C4'O4RC1RH1R70.1°96.1°
O4RC4'C3'H4'122.6°115.2°
O4RC4'C3'O3'119.7°163.1°
O4RC4'C3'H1122.6°73.6°
C1RC2RC3'H2R1125.2°123.4°
C1RC2RC3'H2R2125.3°118.2°
C1RC2RH2R1H2R2123.1°121.6°
C2RC1RN1TH1R120.6°120.7°
C2RC1RN1TC2T92.0°65.8°
C2RC1RN1TC6T87.6°100.8°
C1RC2RC3'C4'27.4°30.0°
C1RC2RC3'O3'91.6°149.2°
C1RC2RC3'H1150.6°88.6°
C3'C2RH2R1H2R2123.0°121.1°
C3'C2RC1RN1T178.3°117.8°
C3'C2RC1RH1R67.8°122.6°
C2RC3'C4'O3'120.2°119.6°
C2RC3'C4'H1122.0°117.0°
C2RC3'C4'H4'123.2°71.7°
C2RC3'O3'H1122.4°122.4°
C2RC3'O3'HO3'180.0°41.6°
H2R1C2RC1RN1T56.5°3.7°
H2R1C2RC1RH1R57.4°115.8°
H2R1C2RC3'C4'152.7°153.3°
H2R1C2RC3'O3'33.7°87.4°
H2R1C2RC3'H184.1°34.7°
H2R2C2RC1RN1T53.0°123.3°
H2R2C2RC1RH1R166.9°3.8°
H2R2C2RC3'C4'97.9°88.2°
H2R2C2RC3'O3'143.1°31.0°
H2R2C2RC3'H125.3°153.2°
C1RN1TC2TC6T179.7°166.0°
C1RN1TC2TO2T0.4°17.9°
C1RN1TC2TN3T179.5°158.3°
C1RN1TC6TC5T179.1°170.7°
C1RN1TC6TH6T50.4°44.7°
H1RC1RN1TC2T28.6°54.9°
H1RC1RN1TC6T151.8°138.5°
N1TC2TO2TN3T179.9°176.0°
N1TC2TN3TC4T0.2°5.5°
N1TC2TN3THT179.8°172.3°
C2TN1TC6TC5T0.4°5.4°
C2TN1TC6TH6T129.2°120.6°
C6TN1TC2TO2T179.9°176.2°
C6TN1TC2TN3T0.1°7.7°
N1TC6TC5TC4T0.5°21.0°
N1TC6TC5TC5M133.4°147.9°
N1TC6TC5TH6T109.6°124.8°
O2TC2TN3TC4T179.8°178.2°
O2TC2TN3THT0.2°3.9°
C2TN3TC4THT180.0°177.9°
C2TN3TC4TO4T179.8°171.2°
C2TN3TC4TC5T0.1°9.9°
N3TC4TO4TC5T179.9°178.7°
N3TC4TC5TC5M139.9°150.5°
N3TC4TC5TC6T0.2°23.1°
HTN3TC4TO4T0.2°6.7°
HTN3TC4TC5T179.9°172.2°
O4TC4TC5TC5M40.0°30.7°
O4TC4TC5TC6T179.8°158.0°
C4TC5TC5MC6T138.7°131.9°
C4TC5TC5MH7173.1°54.7°
C4TC5TC5MH7252.1°174.9°
C4TC5TC5MH73161.6°65.2°
C4TC5TC6TH6T110.1°103.8°
C5TC5MH71H72125.2°121.6°
C5TC5MH71H73125.3°121.0°
C5TC5MH72H73116.5°121.1°
C5MC5TC6TH6T23.8°23.0°
C6TC5TC5MH7165.6°173.4°
C6TC5TC5MH72169.2°53.2°
C6TC5TC5MH7359.7°66.7°
H71C5MH72H73116.5°117.3°
C4'C3'O3'H1123.5°124.9°
C4'C3'O3'HO3'65.8°154.2°
H4'C4'C3'O3'2.9°47.9°
H4'C4'C3'H1114.8°171.3°
H1C3'O3'HO3'57.7°80.9°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon