English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

TRS

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	C1	sing	1.53Å	1.54Å
C	C2	sing	1.53Å	1.54Å
C	C3	sing	1.53Å	1.55Å
C	N	sing	1.47Å	1.47Å
C1	O1	sing	1.43Å	1.40Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.11Å
C2	O2	sing	1.43Å	1.41Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.12Å
C3	O3	sing	1.43Å	1.44Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.12Å
N	HN1	sing	1.01Å	1.02Å
N	HN2	sing	1.01Å	1.02Å
N	HN3	sing	1.01Å	1.02Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C	C2	107.3°	109.4°
C1	C	C3	114.3°	109.5°
C1	C	N	101.8°	109.5°
C	C1	O1	110.2°	109.5°
C	C1	H11	112.0°	109.5°
C	C1	H12	112.0°	109.5°
C2	C	C3	107.1°	109.4°
C2	C	N	117.1°	109.5°
C	C2	O2	114.9°	109.5°
C	C2	H21	110.2°	109.5°
C	C2	H22	110.3°	109.5°
C3	C	N	109.4°	109.5°
C	C3	O3	116.4°	109.4°
C	C3	H31	109.7°	109.5°
C	C3	H32	109.7°	109.5°
C	N	HN1	101.8°	109.5°
C	N	HN2	115.1°	109.5°
C	N	HN3	115.1°	109.5°
O1	C1	H11	111.9°	109.5°
O1	C1	H12	111.9°	109.5°
C1	O1	HO1	110.2°	106.8°
H11	C1	H12	98.5°	109.4°
O2	C2	H21	110.2°	109.5°
O2	C2	H22	110.2°	109.5°
C2	O2	HO2	114.9°	106.8°
H21	C2	H22	100.0°	109.4°
O3	C3	H31	109.7°	109.5°
O3	C3	H32	109.7°	109.4°
C3	O3	HO3	116.3°	106.8°
H31	C3	H32	100.4°	109.5°
HN1	N	HN2	115.1°	109.5°
HN1	N	HN3	115.2°	109.4°
HN2	N	HN3	95.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C	C2	C3	123.2°	120.0°
C1	C	C2	N	113.6°	120.0°
C1	C	C3	N	113.4°	120.0°
C	C1	O1	H11	125.3°	120.0°
C	C1	O1	H12	125.3°	120.0°
C	C1	H11	H12	117.9°	120.0°
C1	C	C2	O2	14.5°	65.0°
C1	C	C2	H21	139.8°	175.0°
C1	C	C2	H22	110.8°	55.0°
C1	C	C3	O3	116.6°	60.1°
C1	C	C3	H31	8.7°	59.9°
C1	C	C3	H32	118.1°	180.0°
C1	C	N	HN1	180.0°	60.0°
C1	C	N	HN2	54.8°	60.0°
C1	C	N	HN3	54.7°	180.0°
C	C1	O1	HO1	180.0°	180.0°
C2	C	C3	N	127.9°	120.0°
C2	C	C1	O1	37.6°	60.0°
C2	C	C1	H11	162.9°	180.0°
C2	C	C1	H12	87.6°	60.0°
C	C2	O2	H21	125.3°	120.0°
C	C2	O2	H22	125.3°	120.0°
C	C2	H21	H22	116.1°	120.0°
C2	C	C3	O3	124.6°	180.0°
C2	C	C3	H31	110.0°	60.0°
C2	C	C3	H32	0.6°	60.0°
C2	C	N	HN1	63.4°	180.0°
C2	C	N	HN2	61.9°	60.0°
C2	C	N	HN3	171.4°	60.1°
C	C2	O2	HO2	179.9°	180.0°
C3	C	C1	O1	81.0°	60.0°
C3	C	C1	H11	44.2°	60.0°
C3	C	C1	H12	153.8°	180.0°
C3	C	C2	O2	137.7°	175.0°
C3	C	C2	H21	97.0°	55.0°
C3	C	C2	H22	12.4°	64.9°
C	C3	O3	H31	125.3°	120.0°
C	C3	O3	H32	125.3°	120.0°
C	C3	H31	H32	115.5°	120.1°
C3	C	N	HN1	58.7°	60.0°
C3	C	N	HN2	176.1°	180.0°
C3	C	N	HN3	66.6°	59.9°
C	C3	O3	HO3	180.0°	180.0°
N	C	C1	O1	161.2°	180.0°
N	C	C1	H11	73.6°	60.0°
N	C	C1	H12	36.0°	60.0°
N	C	C2	O2	99.1°	55.0°
N	C	C2	H21	26.2°	65.0°
N	C	C2	H22	135.6°	175.0°
N	C	C3	O3	3.2°	60.0°
N	C	C3	H31	122.1°	180.0°
N	C	C3	H32	128.5°	60.0°
C	N	HN1	HN2	125.2°	120.0°
C	N	HN1	HN3	125.2°	120.0°
C	N	HN2	HN3	121.0°	120.0°
O1	C1	H11	H12	117.8°	120.0°
H11	C1	O1	HO1	54.7°	60.0°
H12	C1	O1	HO1	54.7°	60.0°
O2	C2	H21	H22	116.1°	120.0°
H21	C2	O2	HO2	54.8°	60.0°
H22	C2	O2	HO2	54.6°	60.0°
O3	C3	H31	H32	115.5°	120.0°
H31	C3	O3	HO3	54.7°	60.0°
H32	C3	O3	HO3	54.7°	60.0°
HN1	N	HN2	HN3	121.1°	120.0°

235458

PDB entries from 2025-04-30

PDB statistics

PDBj update info

Contact PDBj

numon