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TRM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NGCD1doub1.31Å1.34ÅAromatic
NGCD2sing1.34Å1.40ÅAromatic
CD1NE1sing1.37Å1.43ÅAromatic
CD1Csing1.48Å1.54Å
NE1CE2sing1.37Å1.31ÅAromatic
NE1HE11sing0.97Å1.02Å
CE2CZ2doub1.39Å1.35ÅAromatic
CE2CD2sing1.41Å1.39ÅAromatic
CZ2CH2sing1.38Å1.39ÅAromatic
CZ2HZ21sing1.08Å1.10Å
CH2CZ3doub1.39Å1.39ÅAromatic
CH2HH21sing1.08Å1.10Å
CZ3CE3sing1.36Å1.39ÅAromatic
CZ3HZ31sing1.08Å1.10Å
CE3CD2doub1.40Å1.40ÅAromatic
CE3HE31sing1.08Å1.10Å
COdoub1.21Å1.23Å
COXTsing1.35Å1.32Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CD1NGCD2108.5°109.8°
NGCD1NE1106.8°109.7°
NGCD1C137.0°125.1°
NGCD2CE2107.0°107.3°
NGCD2CE3134.5°133.4°
NE1CD1C116.1°125.2°
CD1NE1CE2108.8°107.1°
CD1NE1HE11129.1°126.5°
CD1CO118.8°120.0°
CD1COXT114.0°120.0°
CE2NE1HE11122.1°126.5°
NE1CE2CZ2128.1°134.1°
NE1CE2CD2108.8°106.2°
CZ2CE2CD2123.1°119.8°
CE2CZ2CH2119.2°119.7°
CE2CZ2HZ21119.0°120.1°
CE2CD2CE3118.4°119.3°
CH2CZ2HZ21121.8°120.1°
CZ2CH2CZ3119.0°120.5°
CZ2CH2HH21120.5°119.7°
CZ3CH2HH21120.5°119.8°
CH2CZ3CE3121.9°120.8°
CH2CZ3HZ31119.2°119.7°
CE3CZ3HZ31118.9°119.6°
CZ3CE3CD2118.4°119.9°
CZ3CE3HE31120.5°120.1°
CD2CE3HE31121.1°120.1°
OCOXT127.2°120.0°
COXTHXT113.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NGCD1NE1C179.8°179.9°
NGCD1NE1CE20.3°0.1°
NGCD1NE1HE11179.7°179.9°
CD1NGCD2CE22.4°0.2°
CD1NGCD2CE3179.2°179.9°
NGCD1CO1.1°179.8°
NGCD1COXT177.6°0.2°
CD2NGCD1NE11.7°0.2°
CD2NGCD1C178.1°179.9°
NGCD2CE2NE12.2°0.1°
NGCD2CE2CZ2178.6°179.9°
NGCD2CE2CE3177.3°179.9°
NGCD2CE3CZ3177.9°179.8°
NGCD2CE3HE312.2°0.1°
CD1NE1CE2HE11180.0°180.0°
CD1NE1CE2CZ2179.6°180.0°
CD1NE1CE2CD21.2°0.0°
NE1CD1CO179.2°0.0°
NE1CD1COXT2.2°180.0°
CCD1NE1CE2179.5°180.0°
CCD1NE1HE110.5°0.0°
CD1COOXT178.5°180.0°
CD1COXTHXT180.0°179.9°
NE1CE2CZ2CD2179.0°180.0°
NE1CE2CZ2CH2179.9°180.0°
NE1CE2CZ2HZ210.1°0.0°
NE1CE2CD2CE3179.6°180.0°
HE11NE1CE2CZ20.4°0.0°
HE11NE1CE2CD2178.8°180.0°
CE2CZ2CH2HZ21180.0°180.0°
CE2CZ2CH2CZ30.7°0.0°
CE2CZ2CH2HH21179.3°180.0°
CZ2CE2CD2CE31.2°0.0°
CD2CE2CZ2CH20.8°0.0°
CD2CE2CZ2HZ21179.2°180.0°
CE2CD2CE3CZ31.4°0.1°
CE2CD2CE3HE31178.6°180.0°
CZ2CH2CZ3HH21180.0°180.0°
CZ2CH2CZ3CE31.0°0.0°
CZ2CH2CZ3HZ31179.0°179.9°
HZ21CZ2CH2CZ3179.3°180.0°
HZ21CZ2CH2HH210.7°0.0°
CH2CZ3CE3HZ31180.0°179.9°
CH2CZ3CE3CD21.4°0.1°
CH2CZ3CE3HE31178.6°180.0°
HH21CH2CZ3CE3179.0°180.0°
HH21CH2CZ3HZ311.0°0.1°
CZ3CE3CD2HE31180.0°179.9°
HZ31CZ3CE3CD2178.6°180.0°
HZ31CZ3CE3HE311.4°0.1°
OCOXTHXT1.5°0.1°

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PDB entries from 2024-10-09

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