Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

TRH

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4PP2sing1.61Å1.58Å
O4PH4POsing0.97Å0.95Å
P2O3Pdoub1.48Å1.62Å
P2O1sing1.61Å1.58Å
P2OPPsing1.61Å1.60Å
O1C1sing1.43Å1.39Å
C1C2sing1.53Å1.48Å
C1O5sing1.43Å1.40Å
C1HC1sing1.09Å1.11Å
C2O2sing1.43Å1.42Å
C2C3sing1.53Å1.54Å
C2HC2sing1.09Å1.11Å
O2HO2sing0.97Å0.95Å
C3O3sing1.43Å1.42Å
C3C4sing1.53Å1.51Å
C3HC3sing1.09Å1.12Å
O3HO3sing0.97Å0.95Å
C4O4sing1.43Å1.42Å
C4C5sing1.53Å1.55Å
C4HC4sing1.09Å1.11Å
O4HO4sing0.97Å0.95Å
C5O5sing1.43Å1.46Å
C5C6sing1.53Å1.53Å
C5HC5sing1.09Å1.12Å
C6HC61sing1.09Å1.12Å
C6HC62sing1.09Å1.11Å
C6HC63sing1.09Å1.11Å
OPPPsing1.61Å1.62Å
PO1Psing1.61Å1.58Å
PO2Pdoub1.48Å1.61Å
PO5'sing1.61Å1.58Å
O1PH1POsing0.97Å0.95Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.53Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.40Å
C4'C3'sing1.55Å1.49Å
C4'H4'Csing1.09Å1.11Å
O4'C1'sing1.44Å1.40Å
C3'O3'sing1.43Å1.42Å
C3'C2'sing1.55Å1.53Å
C3'H3'Csing1.09Å1.11Å
O3'H3'Osing0.97Å0.95Å
C2'C1'sing1.54Å1.51Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.12Å
C1'N11sing1.46Å1.46Å
C1'H1'Csing1.09Å1.12Å
N11C21sing1.35Å1.35Å
N11C61sing1.37Å1.34Å
C21O21doub1.22Å1.32Å
C21N31sing1.35Å1.32Å
N31C41sing1.35Å1.33Å
N31H31Nsing0.97Å1.02Å
C41O41doub1.22Å1.32Å
C41C51sing1.42Å1.37Å
C51C5Asing1.51Å1.51Å
C51C61doub1.35Å1.37Å
C5AHCA1sing1.09Å1.11Å
C5AHCA2sing1.09Å1.11Å
C5AHCA3sing1.09Å1.12Å
C61H61Csing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
P2O4PH4PO122.2°106.9°
O4PP2O3P122.2°109.5°
O4PP2O1105.4°109.5°
O4PP2OPP108.6°109.4°
O3PP2O1113.0°109.5°
O3PP2OPP104.2°109.5°
O1P2OPP101.5°109.5°
P2O1C1118.2°106.8°
P2OPPP123.2°106.8°
O1C1C2104.8°109.4°
O1C1O592.2°109.4°
O1C1HC1123.4°109.4°
C2C1O5112.8°109.8°
C2C1HC1106.2°109.4°
C1C2O2104.2°109.6°
C1C2C3110.5°109.1°
C1C2HC2112.8°109.5°
O5C1HC1116.7°109.4°
C1O5C593.2°107.6°
O2C2C3111.1°109.6°
O2C2HC2112.3°109.5°
C2O2HO2104.2°106.8°
C3C2HC2106.2°109.6°
C2C3O3110.9°109.6°
C2C3C4109.0°108.6°
C2C3HC3109.7°109.6°
O3C3C4112.0°109.7°
O3C3HC3106.6°109.6°
C3O3HO3110.9°106.8°
C4C3HC3108.6°109.7°
C3C4O4102.9°109.6°
C3C4C5107.3°109.0°
C3C4HC4117.0°109.6°
O4C4C5114.9°109.5°
O4C4HC4109.7°109.5°
C4O4HO4102.8°106.8°
C5C4HC4105.5°109.6°
C4C5O5110.1°109.8°
C4C5C6112.1°109.5°
C4C5HC5108.9°109.4°
O5C5C6114.0°109.4°
O5C5HC5106.7°109.4°
C6C5HC5104.6°109.4°
C5C6HC61112.0°109.5°
C5C6HC62111.3°109.5°
C5C6HC63111.3°109.5°
HC61C6HC62111.3°109.4°
HC61C6HC63111.2°109.5°
HC62C6HC6399.1°109.5°
OPPPO1P100.3°109.5°
OPPPO2P113.2°109.4°
OPPPO5'104.2°109.5°
O1PPO2P121.8°109.5°
O1PPO5'109.7°109.5°
PO1PH1PO100.4°106.8°
O2PPO5'106.2°109.4°
PO5'C5'116.2°106.9°
O5'C5'C4'108.6°109.5°
O5'C5'H5'1112.6°109.4°
O5'C5'H5'2112.5°109.5°
C4'C5'H5'1112.5°109.4°
C4'C5'H5'2112.5°109.5°
C5'C4'O4'97.9°110.6°
C5'C4'C3'121.1°110.7°
C5'C4'H4'C106.8°110.5°
H5'1C5'H5'297.9°109.5°
O4'C4'C3'97.3°103.6°
O4'C4'H4'C127.8°110.7°
C4'O4'C1'118.7°107.0°
C3'C4'H4'C107.3°110.6°
C4'C3'O3'109.8°111.2°
C4'C3'C2'104.5°102.0°
C4'C3'H3'C112.0°110.7°
O4'C1'C2'89.8°107.3°
O4'C1'N11114.9°109.9°
O4'C1'H1'C119.4°109.9°
O3'C3'C2'107.9°110.9°
O3'C3'H3'C108.8°110.8°
C3'O3'H3'O109.8°106.8°
C2'C3'H3'C113.7°110.9°
C3'C2'C1'106.0°104.3°
C3'C2'H2'1113.6°110.3°
C3'C2'H2'2113.5°110.6°
C1'C2'H2'1113.5°110.5°
C1'C2'H2'2113.5°110.5°
C2'C1'N11112.0°110.0°
C2'C1'H1'C121.9°109.9°
H2'1C2'H2'296.9°110.5°
N11C1'H1'C99.9°109.9°
C1'N11C21117.6°119.7°
C1'N11C61120.2°119.7°
C21N11C61122.1°120.6°
N11C21O21120.8°119.6°
N11C21N31119.8°120.9°
N11C61C51117.9°119.7°
N11C61H61C119.7°120.1°
O21C21N31119.3°119.5°
C21N31C41120.2°120.3°
C21N31H31N119.5°119.9°
C41N31H31N120.3°119.9°
N31C41O41118.9°120.3°
N31C41C51121.2°119.4°
O41C41C51119.9°120.3°
C41C51C5A118.7°120.4°
C41C51C61118.8°119.1°
C5AC51C61122.4°120.4°
C51C5AHCA1118.7°109.5°
C51C5AHCA2108.8°109.5°
C51C5AHCA3108.8°109.4°
C51C61H61C122.4°120.2°
HCA1C5AHCA2108.9°109.5°
HCA1C5AHCA3108.9°109.4°
HCA2C5AHCA3101.2°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4PP2O3PO1127.5°120.0°
O4PP2O3POPP123.2°120.0°
O4PP2O1OPP113.2°120.0°
O4PP2O1C1145.8°60.0°
O4PP2OPPP110.6°60.0°
H4POO4PP2O3P180.0°180.0°
H4POO4PP2O149.3°60.0°
H4POO4PP2OPP58.8°60.0°
O3PP2O1OPP111.0°120.0°
O3PP2O1C110.0°60.0°
O3PP2OPPP21.0°60.0°
P2O1C1C2121.3°149.7°
P2O1C1O5124.4°90.0°
P2O1C1HC10.1°29.9°
O1P2OPPP138.6°180.0°
OPPP2O1C1101.0°180.0°
P2OPPPO1P158.9°60.0°
P2OPPPO2P69.7°60.0°
P2OPPPO5'45.3°180.0°
O1C1C2O598.9°120.1°
O1C1C2HC1132.1°119.8°
O1C1O5HC1129.5°119.8°
O1C1C2O244.6°61.3°
O1C1C2C3164.0°178.7°
O1C1C2HC277.4°58.8°
O1C1O5C5175.8°172.4°
C2C1O5HC1123.4°120.1°
C1C2O2C3119.0°119.6°
C1C2O2HC2122.3°120.1°
C1C2C3HC2122.6°119.8°
C1C2O2HO2180.0°59.9°
C1C2C3O3167.1°173.6°
C1C2C3C443.4°53.8°
C1C2C3HC375.4°66.0°
C2C1O5C577.1°67.5°
O5C1C2O254.2°58.7°
O5C1C2C365.1°61.3°
O5C1C2HC2176.2°178.8°
C1O5C5C478.5°67.6°
C1O5C5C6154.5°172.3°
C1O5C5HC539.6°52.4°
HC1C1C2O2176.8°178.8°
HC1C1C2C363.9°58.8°
HC1C1C2HC254.8°61.1°
HC1C1O5C546.2°52.6°
O2C2C3HC2122.3°120.2°
O2C2C3O352.0°53.7°
O2C2C3C471.7°66.2°
O2C2C3HC3169.5°174.0°
C3C2O2HO261.0°179.6°
C2C3O3C4122.0°119.2°
C2C3O3HC3119.3°120.3°
C2C3C4HC3119.4°119.8°
C2C3O3HO3179.9°60.0°
C2C3C4O4166.3°173.7°
C2C3C4C544.7°53.8°
C2C3C4HC473.4°66.2°
HC2C2O2HO257.7°60.2°
HC2C2C3O370.3°66.5°
HC2C2C3C4165.9°173.6°
HC2C2C3HC347.2°53.8°
O3C3C4HC3117.5°120.5°
O3C3C4O470.6°66.6°
O3C3C4C5167.8°173.6°
O3C3C4HC449.7°53.6°
C4C3O3HO358.0°179.2°
C3C4O4C5116.2°119.6°
C3C4O4HC4125.2°120.3°
C3C4C5HC4125.4°120.0°
C3C4O4HO4180.0°180.0°
C3C4C5O568.1°61.3°
C3C4C5C6163.9°178.5°
C3C4C5HC548.6°58.7°
HC3C3O3HO360.6°60.3°
HC3C3C4O446.9°53.9°
HC3C3C4C574.7°65.9°
HC3C3C4HC4167.1°174.1°
O4C4C5HC4120.9°120.1°
O4C4C5O5178.2°178.8°
O4C4C5C650.2°58.7°
O4C4C5HC565.0°61.2°
C5C4O4HO463.7°60.4°
C4C5O5C6126.9°120.1°
C4C5O5HC5118.1°120.0°
C4C5C6HC5117.9°119.9°
C4C5C6HC61180.0°179.9°
C4C5C6HC6254.8°60.1°
C4C5C6HC6354.8°59.9°
HC4C4O4HO454.8°59.7°
HC4C4C5O557.3°58.7°
HC4C4C5C670.7°61.4°
HC4C4C5HC5174.0°178.7°
O5C5C6HC5116.2°119.8°
O5C5C6HC6154.1°59.8°
O5C5C6HC6271.2°60.2°
O5C5C6HC63179.3°179.8°
C5C6HC61HC62125.3°120.0°
C5C6HC61HC63125.2°120.1°
C5C6HC62HC63117.2°120.0°
HC5C5C6HC6162.1°60.1°
HC5C5C6HC62172.6°180.0°
HC5C5C6HC6363.1°60.0°
HC61C6HC62HC63117.1°120.0°
OPPPO1PO2P125.8°120.0°
OPPPO1PO5'109.3°120.0°
OPPPO2PO5'113.8°120.0°
OPPPO1PH1PO180.0°60.0°
OPPPO5'C5'59.8°180.0°
O1PPO2PO5'126.5°120.0°
O1PPO5'C5'47.0°60.0°
O2PPO1PH1PO54.2°180.0°
O2PPO5'C5'179.6°60.0°
O5'PO1PH1PO70.6°60.1°
PO5'C5'C4'128.8°180.0°
PO5'C5'H5'13.5°60.0°
PO5'C5'H5'2106.0°59.9°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.2°120.1°
O5'C5'H5'1H5'2118.5°120.0°
O5'C5'C4'O4'41.3°63.5°
O5'C5'C4'C3'62.2°177.8°
O5'C5'C4'H4'C174.8°59.4°
C4'C5'H5'1H5'2118.4°119.9°
C5'C4'O4'C3'122.9°118.7°
C5'C4'O4'H4'C118.5°122.8°
C5'C4'C3'H4'C122.7°122.8°
C5'C4'O4'C1'159.7°158.6°
C5'C4'C3'O3'138.0°86.3°
C5'C4'C3'C2'106.5°155.4°
C5'C4'C3'H3'C17.0°37.3°
H5'1C5'C4'O4'166.5°56.4°
H5'1C5'C4'C3'63.0°57.9°
H5'1C5'C4'H4'C60.0°179.3°
H5'2C5'C4'O4'84.0°176.4°
H5'2C5'C4'C3'172.5°62.1°
H5'2C5'C4'H4'C49.5°60.7°
O4'C4'C3'H4'C133.4°118.6°
O4'C4'C3'O3'118.1°155.1°
O4'C4'C3'C2'2.7°36.8°
O4'C4'C3'H3'C120.9°81.3°
C4'O4'C1'C2'50.8°26.5°
C4'O4'C1'N11165.0°146.1°
C4'O4'C1'H1'C76.4°92.9°
C3'C4'O4'C1'36.8°39.9°
C4'C3'O3'C2'113.3°112.8°
C4'C3'O3'H3'C122.9°123.6°
C4'C3'C2'H3'C122.4°117.9°
C4'C3'O3'H3'O179.9°174.3°
C4'C3'C2'C1'25.8°20.6°
C4'C3'C2'H2'199.5°98.0°
C4'C3'C2'H2'2151.1°139.4°
H4'CC4'O4'C1'81.8°78.6°
H4'CC4'C3'O3'15.3°36.5°
H4'CC4'C3'C2'130.7°81.8°
H4'CC4'C3'H3'C105.7°160.1°
O4'C1'C2'C3'40.7°2.2°
O4'C1'C2'N11116.9°119.5°
O4'C1'C2'H1'C125.1°119.4°
O4'C1'C2'H2'184.6°120.7°
O4'C1'C2'H2'2166.0°116.7°
O4'C1'N11H1'C129.0°121.0°
O4'C1'N11C21149.3°58.2°
O4'C1'N11C6126.5°121.4°
O3'C3'C2'H3'C120.8°123.6°
O3'C3'C2'C1'91.0°139.1°
O3'C3'C2'H2'1143.7°20.5°
O3'C3'C2'H2'234.3°102.1°
C2'C3'O3'H3'O66.6°61.5°
C3'C2'C1'H2'1125.3°118.5°
C3'C2'C1'H2'2125.3°118.9°
C3'C2'H2'1H2'2119.4°122.6°
C3'C2'C1'N11157.7°121.7°
C3'C2'C1'H1'C84.4°117.2°
H3'CC3'O3'H3'O57.2°62.2°
H3'CC3'C2'C1'148.3°97.3°
H3'CC3'C2'H2'123.0°144.1°
H3'CC3'C2'H2'286.5°21.5°
C1'C2'H2'1H2'2119.4°122.6°
C2'C1'N11H1'C130.4°121.1°
C2'C1'N11C21110.1°59.7°
C2'C1'N11C6174.0°120.6°
H2'1C2'C1'N1132.4°119.7°
H2'1C2'C1'H1'C150.3°1.3°
H2'2C2'C1'N1177.1°2.9°
H2'2C2'C1'H1'C40.9°123.9°
C1'N11C21C61175.8°179.7°
C1'N11C21O214.4°0.3°
C1'N11C21N31178.0°179.8°
C1'N11C61C51176.9°179.9°
C1'N11C61H61C3.1°0.0°
H1'CC1'N11C2120.3°179.2°
H1'CC1'N11C61155.5°0.4°
N11C21O21N31177.6°179.5°
N11C21N31C412.0°0.5°
N11C21N31H31N178.0°179.7°
C21N11C61C511.2°0.2°
C21N11C61H61C178.8°179.7°
C61N11C21O21179.8°180.0°
C61N11C21N312.3°0.5°
N11C61C51C410.1°0.1°
N11C61C51C5A179.4°180.0°
N11C61C51H61C180.0°179.9°
O21C21N31C41179.5°180.0°
O21C21N31H31N0.4°0.2°
C21N31C41H31N180.0°179.8°
C21N31C41O41179.2°179.7°
C21N31C41C510.7°0.2°
N31C41O41C51179.9°179.9°
N31C41C51C5A179.7°180.0°
N31C41C51C610.3°0.1°
H31NN31C41O410.8°0.1°
H31NN31C41C51179.3°180.0°
O41C41C51C5A0.5°0.1°
O41C41C51C61179.8°180.0°
C41C51C5AC61179.3°179.9°
C41C51C5AHCA1180.0°0.1°
C41C51C5AHCA254.8°120.0°
C41C51C5AHCA354.7°120.0°
C41C51C61H61C179.9°180.0°
C51C5AHCA1HCA2125.2°120.1°
C51C5AHCA1HCA3125.3°119.9°
C51C5AHCA2HCA3114.5°120.0°
C5AC51C61H61C0.7°0.1°
C61C51C5AHCA10.7°180.0°
C61C51C5AHCA2124.5°59.9°
C61C51C5AHCA3126.0°60.1°
HCA1C5AHCA2HCA3114.7°120.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon