English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

TR9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.56Å
C1	C6	sing	1.52Å	1.56Å
C1	H1	sing	1.09Å	1.10Å
C2	C3	sing	1.50Å	1.53Å
C2	O2	sing	1.43Å	1.40Å
C2	H2	sing	1.09Å	1.10Å
C3	C4	sing	1.41Å	1.50Å
C3	O3	doub	1.21Å	1.36Å
C4	C5	doub	1.36Å	1.52Å
C4	C7	sing	1.51Å	1.38Å
C5	C6	sing	1.48Å	1.41Å
C5	O1	sing	1.35Å	1.40Å
C6	O4	doub	1.21Å	1.37Å
C7	H3	sing	1.09Å	1.10Å
C7	H4	sing	1.09Å	1.10Å
C7	H7	sing	1.09Å	1.10Å
O1	H5	sing	0.97Å	0.95Å
O2	H6	sing	0.97Å	0.95Å
C1	H8	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	109.1°	108.0°
C2	C1	H1	109.6°	109.7°
C1	C2	C3	110.1°	109.9°
C1	C2	O2	110.2°	109.4°
C1	C2	H2	108.9°	109.4°
C2	C1	H8	109.6°	109.8°
C6	C1	H1	109.6°	109.7°
C1	C6	C5	120.3°	117.2°
C1	C6	O4	118.7°	121.4°
C6	C1	H8	109.6°	109.8°
H1	C1	H8	109.3°	109.8°
C3	C2	O2	110.7°	109.4°
C3	C2	H2	108.5°	109.3°
C2	C3	C4	118.3°	122.1°
C2	C3	O3	120.4°	118.9°
O2	C2	H2	108.3°	109.4°
C2	O2	H6	109.5°	114.0°
C4	C3	O3	121.3°	118.9°
C3	C4	C5	117.5°	121.2°
C3	C4	C7	120.1°	119.4°
C5	C4	C7	122.3°	119.4°
C4	C5	C6	119.0°	118.5°
C4	C5	O1	117.8°	120.8°
C4	C7	H3	109.5°	109.4°
C4	C7	H4	109.5°	109.5°
C4	C7	H7	109.4°	109.5°
C6	C5	O1	123.2°	120.8°
C5	C6	O4	121.0°	121.4°
C5	O1	H5	109.5°	114.0°
H3	C7	H4	109.4°	109.4°
H3	C7	H7	109.5°	109.5°
H4	C7	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	H1	120.0°	119.6°
C2	C1	C6	H8	120.0°	119.7°
C2	C1	H1	H8	120.2°	120.7°
C1	C2	C3	O2	122.1°	120.1°
C1	C2	C3	H2	119.1°	120.1°
C1	C2	O2	H2	119.1°	119.8°
C1	C2	C3	C4	39.4°	31.9°
C1	C2	C3	O3	140.3°	148.1°
C2	C1	C6	C5	38.8°	50.2°
C2	C1	C6	O4	141.6°	129.8°
C1	C2	O2	H6	130.4°	180.0°
C6	C1	H1	H8	120.1°	120.8°
C6	C1	C2	C3	56.5°	51.3°
C6	C1	C2	O2	178.8°	171.4°
C6	C1	C2	H2	62.4°	68.8°
C1	C6	C5	C4	0.2°	24.1°
C1	C6	C5	O4	179.6°	180.0°
C1	C6	C5	O1	179.9°	156.0°
H1	C1	C2	C3	176.5°	170.8°
H1	C1	C2	O2	61.2°	69.0°
H1	C1	C2	H2	57.6°	50.8°
H1	C1	C6	C5	158.8°	169.8°
H1	C1	C6	O4	21.5°	10.3°
C3	C2	O2	H2	118.9°	119.7°
C2	C3	C4	O3	179.7°	179.9°
C2	C3	C4	C5	0.6°	4.3°
C2	C3	C4	C7	180.0°	175.7°
C3	C2	O2	H6	8.4°	59.6°
C3	C2	C1	H8	63.5°	68.4°
O2	C2	C3	C4	161.5°	152.0°
O2	C2	C3	O3	18.2°	27.9°
O2	C2	C1	H8	58.9°	51.7°
H2	C2	C3	C4	79.7°	88.2°
H2	C2	C3	O3	100.5°	91.8°
H2	C2	O2	H6	110.4°	60.2°
H2	C2	C1	H8	177.6°	171.5°
C3	C4	C5	C7	179.4°	180.0°
C3	C4	C5	C6	20.6°	0.7°
C3	C4	C5	O1	159.6°	179.3°
C3	C4	C7	H3	180.0°	90.1°
C3	C4	C7	H4	60.0°	150.0°
C3	C4	C7	H7	60.0°	30.0°
O3	C3	C4	C5	179.1°	175.6°
O3	C3	C4	C7	0.3°	4.4°
C4	C5	C6	O1	179.8°	180.0°
C4	C5	C6	O4	179.5°	155.9°
C5	C4	C7	H3	0.6°	90.0°
C5	C4	C7	H4	119.4°	29.9°
C5	C4	C7	H7	120.6°	150.0°
C4	C5	O1	H5	179.6°	180.0°
C7	C4	C5	C6	158.8°	179.3°
C7	C4	C5	O1	21.0°	0.8°
C4	C7	H3	H4	120.0°	119.9°
C4	C7	H3	H7	120.0°	120.0°
C4	C7	H4	H7	120.0°	120.1°
C6	C5	O1	H5	0.1°	0.0°
C5	C6	C1	H8	81.2°	69.5°
O1	C5	C6	O4	0.3°	24.0°
O4	C6	C1	H8	98.4°	110.5°
H3	C7	H4	H7	120.0°	120.0°

226262

PDB entries from 2024-10-16

PDB statistics

PDBj update info

Contact PDBj

numon