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TR5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2'C2'sing1.43Å1.44Å
C2N3doub1.32Å1.49ÅAromatic
C2N1sing1.33Å1.50ÅAromatic
O3'C3'sing1.43Å1.44Å
N3C4sing1.34Å1.35ÅAromatic
N1C6doub1.33Å1.35ÅAromatic
C2'C3'sing1.55Å1.54Å
C2'C1'sing1.55Å1.56Å
C3'C4'sing1.54Å1.52Å
C4C5doub1.38Å1.33ÅAromatic
C4N9sing1.36Å1.34ÅAromatic
C6C5sing1.38Å1.33ÅAromatic
C6N61sing1.37Å1.36Å
C62N61sing1.46Å1.49Å
C1'N9sing1.46Å1.50Å
C1'O4'sing1.44Å1.45Å
C5C7sing1.46Å1.32ÅAromatic
N9C8sing1.39Å1.34ÅAromatic
N61N71sing1.40Å1.31Å
C4'C5'sing1.53Å1.53Å
C4'O4'sing1.44Å1.43Å
C5'O5'sing1.43Å1.43Å
C7C8doub1.35Å1.34ÅAromatic
C7C72sing1.47Å1.35Å
N71C72doub1.31Å1.35Å
C72N73sing1.39Å1.34Å
O5'PBsing1.61Å1.61Å
O2PBdoub1.48Å1.60Å
O1PBsing1.61Å1.48Å
PBO3sing1.61Å1.47Å
O3H1sing0.97Å0.95Å
O1H2sing0.97Å0.95Å
C5'H3sing1.09Å1.10Å
C5'H4sing1.09Å1.10Å
C4'H5sing1.09Å1.10Å
C3'H6sing1.09Å1.10Å
O3'H7sing0.97Å0.95Å
C2'H8sing1.09Å1.10Å
O2'H9sing0.97Å0.95Å
C1'H10sing1.09Å1.10Å
C8H11sing1.08Å1.08Å
C2H12sing1.08Å1.08Å
C62H13sing1.09Å1.10Å
C62H14sing1.09Å1.10Å
C62H15sing1.09Å1.10Å
N73H16sing0.97Å1.00Å
N73H17sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2'C2'C3'111.5°110.9°
O2'C2'C1'112.5°110.9°
O2'C2'H8110.0°110.9°
C2'O2'H9109.5°114.0°
N3C2N1112.6°125.6°
C2N3C4120.6°119.9°
N3C2H12123.7°117.2°
C2N1C6121.9°119.0°
N1C2H12123.7°117.2°
O3'C3'C2'113.1°110.6°
O3'C3'C4'109.7°110.5°
O3'C3'H6110.1°110.4°
C3'O3'H7109.5°114.0°
N3C4C5120.4°114.3°
N3C4N9133.4°140.6°
N1C6C5118.7°115.3°
N1C6N61122.9°127.8°
C3'C2'C1'105.7°102.1°
C2'C3'C4'106.2°104.2°
C2'C3'H6108.7°110.4°
C3'C2'H8108.6°110.9°
C2'C1'N9110.4°110.6°
C2'C1'O4'105.5°103.5°
C1'C2'H8108.4°110.8°
C2'C1'H10110.0°110.6°
C3'C4'C5'109.5°109.9°
C3'C4'O4'108.0°107.3°
C3'C4'H5110.2°110.0°
C4'C3'H6109.0°110.5°
C5C4N9106.2°105.1°
C4C5C6125.8°125.9°
C4C5C7111.1°110.0°
C4N9C1'124.6°124.6°
C4N9C8108.1°110.9°
C5C6N61118.3°116.9°
C6C5C7123.1°124.1°
C6N61C62121.0°119.7°
C6N61N71119.8°120.7°
C62N61N71119.2°119.7°
N61C62H13109.5°109.5°
N61C62H14109.4°109.5°
N61C62H15109.5°109.5°
N9C1'O4'108.6°110.7°
C1'N9C8127.3°124.5°
N9C1'H10110.8°110.5°
C1'O4'C4'112.0°107.0°
O4'C1'H10111.5°110.8°
C5C7C8106.1°104.2°
C5C7C72117.8°114.6°
N9C8C7108.6°109.9°
N9C8H11125.7°125.1°
N61N71C72120.9°125.2°
C5'C4'O4'107.5°109.9°
C4'C5'O5'108.6°109.5°
C4'C5'H3109.7°109.5°
C4'C5'H4109.7°109.5°
C5'C4'H5110.1°109.9°
O4'C4'H5111.5°109.9°
C5'O5'PB120.4°123.0°
O5'C5'H3109.7°109.4°
O5'C5'H4109.7°109.5°
C8C7C72136.2°141.2°
C7C8H11125.7°125.0°
C7C72N71120.0°118.5°
C7C72N73117.5°120.8°
N71C72N73122.5°120.7°
C72N73H16120.0°119.9°
C72N73H17120.0°120.0°
O5'PBO2102.4°109.5°
O5'PBO1107.8°109.5°
O5'PBO3108.3°109.5°
O2PBO1107.7°109.4°
O2PBO3109.9°109.5°
O1PBO3119.4°109.5°
PBO1H2109.5°114.0°
PBO3H1109.5°114.0°
H3C5'H4109.5°109.5°
H13C62H14109.5°109.5°
H13C62H15109.5°109.4°
H14C62H15109.5°109.5°
H16N73H17120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2'C2'C3'O3'2.2°20.3°
O2'C2'C3'C1'122.5°118.2°
O2'C2'C3'H8121.4°123.7°
O2'C2'C1'H8121.8°123.6°
O2'C2'C3'C4'118.2°139.0°
O2'C2'C1'N9133.5°86.2°
O2'C2'C1'O4'109.4°155.2°
O2'C2'C3'H6124.7°102.3°
O2'C2'C1'H1011.0°36.6°
N3C2N1H12180.0°180.0°
N3C2N1C60.1°0.2°
C2N3C4C50.1°0.0°
C2N3C4N9179.4°179.3°
N1C2N3C40.1°0.0°
C2N1C6C50.1°0.4°
C2N1C6N61179.7°180.0°
O3'C3'C2'C4'120.4°118.8°
O3'C3'C2'H6122.5°122.6°
O3'C3'C2'C1'124.7°97.9°
O3'C3'C4'H6120.6°122.5°
O3'C3'C4'C5'126.4°119.7°
O3'C3'C4'O4'116.9°120.8°
O3'C3'C4'H55.1°1.4°
O3'C3'C2'H8119.2°144.0°
N3C4C5N9179.7°179.5°
N3C4C5C60.1°0.3°
N3C4N9C1'1.5°0.5°
N3C4C5C7180.0°180.0°
N3C4N9C8179.8°179.8°
C4N3C2H12179.9°180.0°
N1C6C5C40.1°0.5°
N1C6C5N61179.7°179.7°
N1C6N61C620.0°0.0°
N1C6C5C7179.9°179.8°
N1C6N61N71179.9°180.0°
C6N1C2H12180.0°179.8°
C3'C2'C1'H8116.2°118.2°
C2'C3'C4'H6116.9°118.7°
C3'C2'C1'N9104.5°155.6°
C3'C2'C1'O4'12.6°37.0°
C2'C3'C4'C5'111.1°121.4°
C2'C3'C4'O4'5.6°2.0°
C2'C3'C4'H5127.6°117.4°
C2'C3'O3'H7180.0°65.1°
C3'C2'O2'H9180.0°61.5°
C3'C2'C1'H10132.9°81.6°
C1'C2'C3'C4'4.4°20.9°
C2'C1'N9C463.8°84.7°
C2'C1'N9O4'115.1°114.1°
C2'C1'N9H10122.1°122.8°
C2'C1'O4'H10119.4°118.5°
C2'C1'N9C8114.1°95.0°
C2'C1'O4'C4'17.1°40.1°
C1'C2'C3'H6112.8°139.6°
C1'C2'O2'H961.5°174.2°
C3'C4'O4'C1'14.6°26.5°
C3'C4'C5'O4'117.1°117.8°
C3'C4'C5'H5121.3°121.2°
C3'C4'O4'H5121.2°119.6°
C3'C4'C5'O5'163.7°175.8°
C3'C4'C5'H376.5°64.3°
C3'C4'C5'H443.8°55.7°
C4'C3'O3'H761.6°180.0°
C4'C3'C2'H8120.4°97.2°
C4C5C6C7179.8°179.7°
C4C5C6N61179.8°179.9°
C5C4N9C1'178.1°179.9°
C5C4N9C80.2°0.4°
C4C5C7C80.3°0.3°
C4C5C7C72179.9°179.8°
N9C4C5C6179.5°179.8°
C4N9C1'C8178.0°179.6°
C4N9C1'O4'179.0°161.2°
N9C4C5C70.3°0.4°
C4N9C8C70.0°0.3°
C4N9C1'H1058.2°38.2°
C4N9C8H11180.0°179.8°
C5C6N61C62179.6°179.6°
C5C6N61N710.4°0.3°
C6C5C7C8179.5°180.0°
C6C5C7C720.1°0.0°
C6N61C62N71179.9°179.9°
N61C6C5C70.4°0.1°
C6N61N71C720.1°0.4°
C6N61C62H13179.9°89.9°
C6N61C62H1459.9°150.0°
C6N61C62H1560.1°30.0°
C62N61N71C72180.0°179.5°
N61C62H13H14120.0°120.0°
N61C62H13H15120.0°120.0°
N61C62H14H15120.0°120.0°
N9C1'O4'H10122.3°122.9°
N9C1'O4'C4'101.2°158.6°
C1'N9C8C7178.2°180.0°
N9C1'C2'H811.7°37.3°
C1'N9C8H111.8°0.1°
O4'C1'N9C81.0°19.1°
C1'O4'C4'C5'103.4°145.9°
C1'O4'C4'H5135.8°93.1°
O4'C1'C2'H8128.8°81.2°
C5C7C8N90.2°0.0°
C5C7C8C72179.5°180.0°
C5C7C72N710.3°0.0°
C5C7C72N73179.7°180.0°
C5C7C8H11179.9°180.0°
N9C8C7H11180.0°179.9°
N9C8C7C72179.7°179.9°
C8N9C1'H10123.8°142.2°
N61N71C72C70.2°0.3°
N61N71C72N73179.6°179.8°
N71N61C62H130.0°90.0°
N71N61C62H14120.0°30.0°
N71N61C62H15120.0°150.0°
C5'C4'O4'H5120.8°121.0°
C4'C5'O5'H3119.9°120.0°
C4'C5'O5'H4119.9°120.0°
C4'C5'O5'PB178.3°180.0°
C4'C5'H3H4120.4°120.0°
C5'C4'C3'H65.8°2.8°
O4'C4'C5'O5'46.6°66.5°
O4'C4'C5'H3166.4°53.5°
O4'C4'C5'H473.3°173.5°
O4'C4'C3'H6122.5°116.6°
C4'O4'C1'H10136.5°78.5°
C5'O5'PBO242.8°54.9°
C5'O5'PBO170.7°65.0°
C5'O5'PBO3158.8°175.0°
O5'C5'H3H4120.4°120.0°
O5'C5'C4'H575.0°54.5°
C8C7C72N71179.7°180.0°
C8C7C72N730.8°0.0°
C7C72N71N73179.4°180.0°
C72C7C8H110.3°0.0°
C7C72N73H16179.4°0.1°
C7C72N73H170.6°179.9°
N71C72N73H160.0°179.9°
N71C72N73H17180.0°0.0°
C72N73H16H17180.0°179.9°
O5'PBO2O1113.6°120.0°
O5'PBO2O3114.9°120.1°
O5'PBO1O3124.0°120.0°
O5'PBO3H1111.1°180.0°
O5'PBO1H2109.9°60.0°
PBO5'C5'H358.4°60.1°
PBO5'C5'H461.8°59.9°
O2PBO1O3126.1°120.0°
O2PBO3H10.0°59.9°
O2PBO1H20.0°180.0°
O1PBO3H1125.1°60.0°
O3PBO1H2126.1°60.0°
H3C5'C4'H544.8°174.5°
H4C5'C4'H5165.1°65.5°
H5C4'C3'H6115.4°123.9°
H6C3'O3'H758.3°57.4°
H6C3'C2'H83.3°21.4°
H8C2'O2'H959.4°62.3°
H8C2'C1'H10110.8°160.2°
H13C62H14H15120.0°120.0°

217705

PDB entries from 2024-03-27

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