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TQD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2DN1'sing1.47Å1.40Å
C2DN2'sing1.47Å1.32Å
C2DN3'sing1.47Å1.36Å
C2DH2'sing1.09Å1.10Å
C4DC4Asing1.47Å1.45Å
C4DN3'doub1.31Å1.30Å
C4DN4'sing1.38Å1.34Å
C4AC5Dsing1.50Å1.42Å
C4AC8Adoub1.34Å1.42Å
C5DC6Dsing1.53Å1.40Å
C5DH5'1sing1.09Å1.10Å
C5DH5'2sing1.09Å1.10Å
C6DC7'sing1.53Å1.41Å
C6DC8'sing1.53Å1.56Å
C6DH6'sing1.09Å1.10Å
C7'C8sing1.53Å1.42Å
C7'H7'1sing1.09Å1.10Å
C7'H7'2sing1.09Å1.10Å
C8C8Asing1.50Å1.39Å
C8H81sing1.09Å1.10Å
C8H82sing1.09Å1.10Å
C8AN1'sing1.38Å1.39Å
C8'N9'sing1.46Å1.46Å
C8'H8'1sing1.09Å1.10Å
C8'H8'2sing1.09Å1.10Å
C1'C2'doub1.39Å1.39ÅAromatic
C1'C6'sing1.39Å1.40ÅAromatic
C1'N9'sing1.40Å1.38Å
C2'C3'sing1.39Å1.38ÅAromatic
C2'H2'1sing1.08Å1.08Å
C3'C4'doub1.39Å1.38ÅAromatic
C3'O3'sing1.36Å1.36Å
C3BO3'sing1.43Å1.42Å
C3BH3B1sing1.09Å1.10Å
C3BH3B2sing1.09Å1.10Å
C3BH3B3sing1.09Å1.10Å
C4'C5'sing1.39Å1.41ÅAromatic
C4'O4'sing1.36Å1.41Å
C4BO4'sing1.43Å1.43Å
C4BH4B1sing1.09Å1.10Å
C4BH4B2sing1.09Å1.10Å
C4BH4B3sing1.09Å1.10Å
C5'C6'doub1.39Å1.41ÅAromatic
C5'O5'sing1.36Å1.43Å
C5BO5'sing1.43Å1.45Å
C5BH5B1sing1.09Å1.10Å
C5BH5B2sing1.09Å1.10Å
C5BH5B3sing1.09Å1.10Å
C6'H6'1sing1.08Å1.08Å
N1'H1Dsing0.97Å1.00Å
N2'H2A1sing1.01Å1.00Å
N2'H2A2sing1.01Å1.00Å
N4'H4'1sing0.97Å1.00Å
N4'H4'2sing0.97Å1.00Å
N9'C9'sing1.47Å1.45Å
C9'H9'1sing1.09Å1.10Å
C9'H9'2sing1.09Å1.10Å
C9'H9'3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1'C2DN2'118.3°109.6°
N1'C2DN3'117.3°109.1°
N1'C2DH2'98.3°109.5°
C2DN1'C8A116.5°118.4°
C2DN1'H1D107.2°120.8°
N2'C2DN3'117.2°109.5°
N2'C2DH2'98.5°109.6°
C2DN2'H2A1109.5°111.0°
C2DN2'H2A2109.5°111.0°
N3'C2DH2'100.3°109.6°
C2DN3'C4D123.2°120.5°
C4AC4DN3'118.5°120.3°
C4AC4DN4'124.8°119.8°
C4DC4AC5D123.7°118.5°
C4DC4AC8A114.1°118.6°
N3'C4DN4'114.2°119.9°
C4DN4'H4'1109.9°120.0°
C4DN4'H4'2125.0°120.0°
C5DC4AC8A116.5°122.9°
C4AC5DC6D119.6°110.6°
C4AC5DH5'1106.2°109.3°
C4AC5DH5'2103.8°109.3°
C4AC8AC8121.2°123.4°
C4AC8AN1'120.5°118.0°
C6DC5DH5'1106.2°109.2°
C6DC5DH5'2103.8°109.3°
C5DC6DC7'120.6°108.4°
C5DC6DC8'116.2°109.7°
C5DC6DH6'106.4°109.7°
H5'1C5DH5'2117.9°109.2°
C7'C6DC8'122.3°109.7°
C7'C6DH6'75.6°109.7°
C6DC7'C8118.5°108.3°
C6DC7'H7'1106.6°109.7°
C6DC7'H7'2104.5°109.7°
C8'C6DH6'98.1°109.7°
C6DC8'N9'116.7°109.4°
C6DC8'H8'1107.1°109.4°
C6DC8'H8'2105.5°109.5°
C8C7'H7'1106.6°109.7°
C8C7'H7'2104.5°109.7°
C7'C8C8A119.6°110.6°
C7'C8H81106.2°109.2°
C7'C8H82103.9°109.3°
H7'1C7'H7'2116.8°109.7°
C8AC8H81106.2°109.3°
C8AC8H82103.8°109.3°
C8C8AN1'118.3°118.6°
H81C8H82117.8°109.2°
C8AN1'H1D107.1°120.8°
N9'C8'H8'1107.1°109.5°
N9'C8'H8'2105.5°109.5°
C8'N9'C1'119.4°120.0°
C8'N9'C9'122.6°120.0°
H8'1C8'H8'2115.3°109.5°
C2'C1'C6'123.5°120.0°
C2'C1'N9'114.2°120.0°
C1'C2'C3'118.1°120.0°
C1'C2'H2'1120.9°120.0°
C6'C1'N9'122.1°120.0°
C1'C6'C5'116.2°120.0°
C1'C6'H6'1121.9°120.0°
C1'N9'C9'117.6°120.0°
C3'C2'H2'1120.9°119.9°
C2'C3'C4'121.7°119.9°
C2'C3'O3'123.2°120.0°
C4'C3'O3'115.0°120.1°
C3'C4'C5'119.5°120.0°
C3'C4'O4'119.2°120.0°
C3'O3'C3B117.1°117.0°
O3'C3BH3B1109.5°109.4°
O3'C3BH3B2109.5°109.5°
O3'C3BH3B3109.5°109.4°
H3B1C3BH3B2109.4°109.5°
H3B1C3BH3B3109.5°109.4°
H3B2C3BH3B3109.5°109.5°
C5'C4'O4'121.3°120.0°
C4'C5'C6'120.8°119.9°
C4'C5'O5'107.8°120.0°
C4'O4'C4B109.2°117.0°
O4'C4BH4B1109.5°109.5°
O4'C4BH4B2109.5°109.5°
O4'C4BH4B3109.4°109.5°
H4B1C4BH4B2109.5°109.4°
H4B1C4BH4B3109.5°109.5°
H4B2C4BH4B3109.5°109.5°
C6'C5'O5'131.4°120.0°
C5'C6'H6'1121.9°119.9°
C5'O5'C5B106.7°117.0°
O5'C5BH5B1109.5°109.4°
O5'C5BH5B2109.5°109.5°
O5'C5BH5B3109.4°109.5°
H5B1C5BH5B2109.5°109.4°
H5B1C5BH5B3109.5°109.5°
H5B2C5BH5B3109.5°109.5°
H2A1N2'H2A2109.5°111.0°
H4'1N4'H4'2125.1°120.0°
N9'C9'H9'1109.5°109.4°
N9'C9'H9'2109.5°109.5°
N9'C9'H9'3109.4°109.6°
H9'1C9'H9'2109.4°109.4°
H9'1C9'H9'3109.4°109.5°
H9'2C9'H9'3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1'C2DN2'N3'149.5°119.6°
N1'C2DN2'H2'104.2°120.2°
N1'C2DN3'H2'105.0°119.9°
N1'C2DN3'C4D7.7°29.0°
C2DN1'C8AC4A21.4°31.5°
C2DN1'C8AC8159.8°148.5°
C2DN1'C8AH1D120.0°179.9°
N1'C2DN2'H2A182.1°180.0°
N1'C2DN2'H2A237.9°56.0°
N2'C2DN3'H2'105.2°120.2°
N2'C2DN3'C4D157.5°90.9°
N2'C2DN1'C8A178.1°74.6°
N2'C2DN1'H1D58.1°105.3°
C2DN2'H2A1H2A2120.0°123.9°
C2DN3'C4DC4A20.6°0.4°
C2DN3'C4DN4'176.6°179.6°
N3'C2DN1'C8A28.6°45.3°
N3'C2DN1'H1D91.4°134.8°
N3'C2DN2'H2A1128.4°60.4°
N3'C2DN2'H2A2111.6°175.6°
H2'C2DN3'C4D97.3°148.9°
H2'C2DN1'C8A77.6°165.2°
H2'C2DN1'H1D162.4°14.9°
H2'C2DN2'H2A122.1°59.8°
H2'C2DN2'H2A2142.1°64.2°
C4AC4DN3'N4'162.8°180.0°
C4DC4AC5DC8A152.0°179.6°
C4DC4AC5DC6D174.9°162.4°
C4DC4AC5DH5'165.1°42.2°
C4DC4AC5DH5'259.9°77.3°
C4DC4AC8AC8173.5°179.4°
C4DC4AC8AN1'5.2°0.7°
C4AC4DN4'H4'111.2°0.0°
C4AC4DN4'H4'2168.8°180.0°
N3'C4DC4AC5D179.0°162.9°
N3'C4DC4AC8A26.4°16.8°
N3'C4DN4'H4'1172.8°180.0°
N3'C4DN4'H4'27.2°0.0°
N4'C4DC4AC5D20.1°17.1°
N4'C4DC4AC8A172.7°163.3°
C4DN4'H4'1H4'2180.0°180.0°
C4AC5DC6DH5'1120.0°120.3°
C4AC5DC6DH5'2115.1°120.3°
C4AC5DH5'1H5'2115.8°119.5°
C4AC5DC6DC7'11.9°50.7°
C4AC5DC6DC8'178.8°170.4°
C4AC5DC6DH6'70.8°69.0°
C5DC4AC8AC818.9°1.0°
C5DC4AC8AN1'159.9°178.9°
C8AC4AC5DC6D23.0°18.0°
C8AC4AC5DH5'1143.0°138.2°
C8AC4AC5DH5'292.1°102.3°
C4AC8AC8C7'3.5°17.6°
C4AC8AC8N1'178.8°179.9°
C4AC8AC8H81116.5°102.7°
C4AC8AC8H82118.6°137.9°
C4AC8AN1'H1D98.6°148.6°
C6DC5DH5'1H5'2115.8°119.4°
C5DC6DC7'C8'168.7°119.7°
C5DC6DC7'H6'100.8°119.7°
C5DC6DC8'H6'112.8°120.6°
C5DC6DC7'C84.0°68.6°
C5DC6DC7'H7'1116.0°171.6°
C5DC6DC7'H7'2119.7°51.1°
C5DC6DC8'N9'139.9°65.0°
C5DC6DC8'H8'1100.1°54.9°
C5DC6DC8'H8'223.2°175.0°
H5'1C5DC6DC7'131.9°170.9°
H5'1C5DC6DC8'58.8°69.3°
H5'1C5DC6DH6'49.2°51.2°
H5'2C5DC6DC7'103.2°69.6°
H5'2C5DC6DC8'66.2°50.1°
H5'2C5DC6DH6'174.1°170.7°
C7'C6DC8'H6'78.0°120.5°
C6DC7'C8H7'1120.0°119.7°
C6DC7'C8H7'2115.7°119.7°
C6DC7'H7'1H7'2116.3°120.5°
C6DC7'C8C8A8.2°50.2°
C6DC7'C8H81128.2°70.1°
C6DC7'C8H82106.9°170.5°
C7'C6DC8'N9'29.2°176.1°
C7'C6DC8'H8'190.8°64.0°
C7'C6DC8'H8'2145.9°56.1°
C8'C6DC7'C8164.7°171.7°
C8'C6DC7'H7'175.3°51.9°
C8'C6DC7'H7'248.9°68.7°
C6DC8'N9'H8'1120.0°119.9°
C6DC8'N9'H8'2116.7°120.0°
C6DC8'H8'1H8'2117.0°120.0°
C6DC8'N9'C1'81.0°90.0°
C6DC8'N9'C9'91.7°90.1°
H6'C6DC7'C8104.8°51.1°
H6'C6DC7'H7'115.2°68.6°
H6'C6DC7'H7'2139.5°170.8°
H6'C6DC8'N9'107.2°55.6°
H6'C6DC8'H8'112.8°175.5°
H6'C6DC8'H8'2136.1°64.4°
C8C7'H7'1H7'2116.3°120.6°
C7'C8C8AH81120.0°120.3°
C7'C8C8AH82115.1°120.3°
C7'C8H81H82115.8°119.5°
C7'C8C8AN1'175.3°162.3°
H7'1C7'C8C8A111.8°169.9°
H7'1C7'C8H818.2°49.6°
H7'1C7'C8H82133.1°69.8°
H7'2C7'C8C8A124.0°69.5°
H7'2C7'C8H81116.0°170.2°
H7'2C7'C8H828.9°50.8°
C8AC8H81H82115.8°119.5°
C8C8AN1'H1D80.2°31.4°
H81C8C8AN1'64.7°77.4°
H82C8C8AN1'60.2°42.1°
N9'C8'H8'1H8'2117.0°120.1°
C8'N9'C1'C2'161.8°179.9°
C8'N9'C1'C6'13.1°0.3°
C8'N9'C1'C9'173.0°179.9°
C8'N9'C9'H9'182.3°90.1°
C8'N9'C9'H9'2157.7°150.0°
C8'N9'C9'H9'337.6°29.9°
H8'1C8'N9'C1'39.0°29.9°
H8'1C8'N9'C9'148.4°150.0°
H8'2C8'N9'C1'162.4°150.0°
H8'2C8'N9'C9'25.0°29.9°
C2'C1'C6'N9'174.4°179.8°
C1'C2'C3'H2'1180.0°180.0°
C1'C2'C3'C4'1.1°0.0°
C1'C2'C3'O3'178.3°180.0°
C2'C1'C6'C5'5.1°0.1°
C2'C1'C6'H6'1175.0°180.0°
C2'C1'N9'C9'11.2°0.1°
C6'C1'C2'C3'2.2°0.0°
C6'C1'C2'H2'1177.8°180.0°
C1'C6'C5'C4'4.8°0.0°
C1'C6'C5'H6'1180.0°180.0°
C1'C6'C5'O5'178.4°180.0°
C6'C1'N9'C9'173.9°179.8°
N9'C1'C2'C3'177.0°179.7°
N9'C1'C2'H2'13.0°0.3°
N9'C1'C6'C5'179.5°179.7°
N9'C1'C6'H6'10.5°0.3°
C1'N9'C9'H9'190.4°90.0°
C1'N9'C9'H9'229.6°29.9°
C1'N9'C9'H9'3149.6°150.0°
C2'C3'C4'O3'177.4°180.0°
C2'C3'O3'C3B4.6°0.1°
C2'C3'C4'C5'1.2°0.0°
C2'C3'C4'O4'179.2°180.0°
H2'1C2'C3'C4'178.9°180.0°
H2'1C2'C3'O3'1.8°0.0°
C4'C3'O3'C3B172.7°180.0°
C3'C4'C5'O4'179.6°180.0°
C3'C4'O4'C4B40.5°90.0°
C3'C4'C5'C6'1.9°0.0°
C3'C4'C5'O5'179.4°180.0°
C3'O3'C3BH3B199.2°180.0°
C3'O3'C3BH3B2140.8°59.9°
C3'O3'C3BH3B320.8°60.1°
O3'C3'C4'C5'178.6°180.0°
O3'C3'C4'O4'1.8°0.0°
O3'C3BH3B1H3B2120.0°120.1°
O3'C3BH3B1H3B3120.0°119.9°
O3'C3BH3B2H3B3120.0°120.0°
H3B1C3BH3B2H3B3120.0°120.0°
C5'C4'O4'C4B139.1°90.0°
C4'C5'C6'O5'176.7°180.0°
C4'C5'O5'C5B179.2°180.0°
C4'C5'C6'H6'1175.2°180.0°
C4'O4'C4BH4B173.3°60.0°
C4'O4'C4BH4B2166.7°180.0°
C4'O4'C4BH4B346.7°60.0°
O4'C4'C5'C6'177.7°180.0°
O4'C4'C5'O5'0.2°0.0°
O4'C4BH4B1H4B2120.0°120.0°
O4'C4BH4B1H4B3120.0°120.0°
O4'C4BH4B2H4B3120.0°120.0°
H4B1C4BH4B2H4B3120.0°120.0°
C6'C5'O5'C5B2.1°0.0°
C5'O5'C5BH5B177.9°180.0°
C5'O5'C5BH5B2162.1°60.0°
C5'O5'C5BH5B342.1°60.0°
O5'C5'C6'H6'11.6°0.0°
O5'C5BH5B1H5B2120.0°119.9°
O5'C5BH5B1H5B3120.0°120.0°
O5'C5BH5B2H5B3120.0°120.0°
H5B1C5BH5B2H5B3120.0°120.1°
N9'C9'H9'1H9'2120.0°119.9°
N9'C9'H9'1H9'3120.0°120.1°
N9'C9'H9'2H9'3120.0°120.1°
H9'1C9'H9'2H9'3120.0°120.0°

222415

PDB entries from 2024-07-10

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