TPZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CA | C | sing | 1.51Å | 1.54Å | |
| O | C | doub | 1.21Å | 1.29Å | |
| C | OXT | sing | 1.34Å | 1.26Å | |
| C1 | N | sing | 1.35Å | 1.33Å | |
| N | CA | sing | 1.46Å | 1.46Å | |
| N | HN | sing | 0.97Å | 1.00Å | |
| O2P | P | doub | 1.48Å | 1.50Å | |
| O3P | P | sing | 1.61Å | 1.52Å | |
| O4P | P | sing | 1.61Å | 1.62Å | |
| P | O1P | sing | 1.61Å | 1.50Å | |
| C2 | C1 | sing | 1.51Å | 1.50Å | |
| C1 | O1 | doub | 1.21Å | 1.25Å | |
| C2 | C3 | sing | 1.53Å | 1.53Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| C2 | H2A | sing | 1.09Å | 1.10Å | |
| C4 | C3 | sing | 1.53Å | 1.53Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C3 | H3A | sing | 1.09Å | 1.10Å | |
| C5 | C4 | sing | 1.53Å | 1.50Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C4 | H4A | sing | 1.09Å | 1.10Å | |
| S5 | C5 | sing | 1.81Å | 1.88Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C5 | H5A | sing | 1.09Å | 1.10Å | |
| S5 | HS5 | sing | 1.35Å | 1.30Å | |
| CB | CA | sing | 1.53Å | 1.50Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CG | CB | sing | 1.53Å | 1.52Å | |
| O4P | CB | sing | 1.43Å | 1.45Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| CG | HGB | sing | 1.09Å | 1.10Å | |
| O1P | HO1P | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å | |
| OXT | HOXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | C | O | 115.9° | 120.0° |
| CA | C | OXT | 120.4° | 120.0° |
| C | CA | N | 109.8° | 109.5° |
| C | CA | CB | 109.3° | 109.5° |
| C | CA | HA | 112.4° | 109.4° |
| O | C | OXT | 123.7° | 120.0° |
| C | OXT | HOXT | 109.5° | 116.9° |
| C1 | N | CA | 122.8° | 120.0° |
| C1 | N | HN | 118.6° | 120.0° |
| N | C1 | C2 | 114.7° | 120.0° |
| N | C1 | O1 | 121.5° | 120.0° |
| CA | N | HN | 118.6° | 120.0° |
| N | CA | CB | 117.1° | 109.5° |
| N | CA | HA | 103.7° | 109.4° |
| O2P | P | O3P | 111.7° | 109.4° |
| O2P | P | O4P | 107.7° | 109.5° |
| O2P | P | O1P | 113.1° | 109.5° |
| O3P | P | O4P | 101.1° | 109.5° |
| O3P | P | O1P | 114.2° | 109.5° |
| P | O3P | HO3P | 109.5° | 114.0° |
| O4P | P | O1P | 108.1° | 109.5° |
| P | O4P | CB | 119.7° | 123.0° |
| P | O1P | HO1P | 109.5° | 114.0° |
| C2 | C1 | O1 | 123.8° | 120.0° |
| C1 | C2 | C3 | 109.2° | 109.5° |
| C1 | C2 | H2 | 109.6° | 109.5° |
| C1 | C2 | H2A | 109.6° | 109.5° |
| C3 | C2 | H2 | 109.6° | 109.5° |
| C3 | C2 | H2A | 109.6° | 109.5° |
| C2 | C3 | C4 | 112.7° | 109.5° |
| C2 | C3 | H3 | 108.4° | 109.5° |
| C2 | C3 | H3A | 108.4° | 109.5° |
| H2 | C2 | H2A | 109.4° | 109.5° |
| C4 | C3 | H3 | 108.4° | 109.5° |
| C4 | C3 | H3A | 108.4° | 109.5° |
| C3 | C4 | C5 | 112.5° | 109.5° |
| C3 | C4 | H4 | 108.5° | 109.4° |
| C3 | C4 | H4A | 108.5° | 109.5° |
| H3 | C3 | H3A | 110.5° | 109.4° |
| C5 | C4 | H4 | 108.4° | 109.5° |
| C5 | C4 | H4A | 108.5° | 109.5° |
| C4 | C5 | S5 | 108.1° | 109.5° |
| C4 | C5 | H5 | 109.9° | 109.5° |
| C4 | C5 | H5A | 109.9° | 109.5° |
| H4 | C4 | H4A | 110.5° | 109.5° |
| S5 | C5 | H5 | 109.9° | 109.4° |
| S5 | C5 | H5A | 109.9° | 109.5° |
| C5 | S5 | HS5 | 102.0° | 103.0° |
| H5 | C5 | H5A | 109.0° | 109.5° |
| CB | CA | HA | 104.3° | 109.5° |
| CA | CB | CG | 113.5° | 109.5° |
| CA | CB | O4P | 106.3° | 109.5° |
| CA | CB | HB | 108.3° | 109.4° |
| CG | CB | O4P | 107.5° | 109.5° |
| CG | CB | HB | 107.2° | 109.4° |
| CB | CG | HG | 109.5° | 109.5° |
| CB | CG | HGA | 109.4° | 109.5° |
| CB | CG | HGB | 109.5° | 109.5° |
| O4P | CB | HB | 114.2° | 109.5° |
| HG | CG | HGA | 109.5° | 109.5° |
| HG | CG | HGB | 109.4° | 109.4° |
| HGA | CG | HGB | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | C | O | OXT | 178.4° | 179.7° |
| C | CA | N | C1 | 132.0° | 85.0° |
| C | CA | N | CB | 125.4° | 120.0° |
| C | CA | N | HA | 120.4° | 120.0° |
| C | CA | N | HN | 48.0° | 95.0° |
| C | CA | CB | HA | 120.4° | 120.0° |
| C | CA | CB | CG | 176.4° | 175.0° |
| C | CA | CB | O4P | 58.5° | 55.0° |
| C | CA | CB | HB | 64.6° | 65.0° |
| CA | C | OXT | HOXT | 178.3° | 179.7° |
| O | C | CA | N | 29.5° | 0.4° |
| O | C | CA | CB | 100.3° | 119.7° |
| O | C | CA | HA | 144.4° | 120.3° |
| O | C | OXT | HOXT | 0.0° | 0.0° |
| OXT | C | CA | N | 148.9° | 180.0° |
| OXT | C | CA | CB | 81.3° | 60.0° |
| OXT | C | CA | HA | 34.0° | 60.0° |
| C1 | N | CA | HN | 180.0° | 180.0° |
| N | C1 | C2 | O1 | 179.0° | 180.0° |
| N | C1 | C2 | C3 | 160.7° | 180.0° |
| N | C1 | C2 | H2 | 40.7° | 60.0° |
| N | C1 | C2 | H2A | 79.3° | 60.0° |
| C1 | N | CA | CB | 102.6° | 155.0° |
| C1 | N | CA | HA | 11.6° | 35.0° |
| CA | N | C1 | C2 | 172.8° | 180.0° |
| CA | N | C1 | O1 | 6.2° | 0.0° |
| N | CA | CB | HA | 113.9° | 120.0° |
| N | CA | CB | CG | 50.8° | 55.0° |
| N | CA | CB | O4P | 67.1° | 65.0° |
| N | CA | CB | HB | 169.7° | 175.0° |
| HN | N | C1 | C2 | 7.2° | 0.0° |
| HN | N | C1 | O1 | 173.8° | 180.0° |
| HN | N | CA | CB | 77.4° | 25.0° |
| HN | N | CA | HA | 168.4° | 145.0° |
| O2P | P | O3P | O4P | 114.3° | 120.0° |
| O2P | P | O3P | O1P | 129.9° | 120.0° |
| O2P | P | O4P | O1P | 122.5° | 120.0° |
| O2P | P | O4P | CB | 75.0° | 55.0° |
| O2P | P | O1P | HO1P | 0.0° | 60.0° |
| O2P | P | O3P | HO3P | 0.0° | 180.0° |
| O3P | P | O4P | O1P | 120.2° | 120.0° |
| O3P | P | O4P | CB | 167.7° | 65.0° |
| O3P | P | O1P | HO1P | 129.3° | 59.9° |
| P | O4P | CB | CA | 140.8° | 120.0° |
| P | O4P | CB | CG | 97.4° | 119.9° |
| P | O4P | CB | HB | 21.4° | 0.1° |
| O4P | P | O1P | HO1P | 119.1° | 180.0° |
| O4P | P | O3P | HO3P | 114.3° | 60.0° |
| O1P | P | O4P | CB | 47.4° | 175.0° |
| O1P | P | O3P | HO3P | 129.9° | 60.0° |
| C1 | C2 | C3 | H2 | 120.0° | 120.0° |
| C1 | C2 | C3 | H2A | 120.0° | 120.0° |
| C1 | C2 | H2 | H2A | 120.1° | 120.0° |
| C1 | C2 | C3 | C4 | 164.9° | 180.0° |
| C1 | C2 | C3 | H3 | 75.1° | 59.9° |
| C1 | C2 | C3 | H3A | 44.9° | 60.0° |
| O1 | C1 | C2 | C3 | 18.3° | 0.0° |
| O1 | C1 | C2 | H2 | 138.3° | 120.0° |
| O1 | C1 | C2 | H2A | 101.7° | 120.0° |
| C3 | C2 | H2 | H2A | 120.2° | 120.0° |
| C2 | C3 | C4 | H3 | 120.0° | 120.0° |
| C2 | C3 | C4 | H3A | 120.0° | 120.0° |
| C2 | C3 | H3 | H3A | 118.7° | 120.0° |
| C2 | C3 | C4 | C5 | 52.6° | 179.9° |
| C2 | C3 | C4 | H4 | 172.6° | 60.0° |
| C2 | C3 | C4 | H4A | 67.4° | 60.0° |
| H2 | C2 | C3 | C4 | 44.9° | 60.0° |
| H2 | C2 | C3 | H3 | 164.9° | 180.0° |
| H2 | C2 | C3 | H3A | 75.1° | 60.0° |
| H2A | C2 | C3 | C4 | 75.1° | 60.0° |
| H2A | C2 | C3 | H3 | 44.9° | 60.1° |
| H2A | C2 | C3 | H3A | 164.9° | 180.0° |
| C4 | C3 | H3 | H3A | 118.7° | 120.0° |
| C3 | C4 | C5 | H4 | 120.0° | 119.9° |
| C3 | C4 | C5 | H4A | 120.0° | 120.0° |
| C3 | C4 | H4 | H4A | 118.8° | 120.0° |
| C3 | C4 | C5 | S5 | 56.3° | 180.0° |
| C3 | C4 | C5 | H5 | 176.3° | 60.1° |
| C3 | C4 | C5 | H5A | 63.7° | 60.0° |
| H3 | C3 | C4 | C5 | 67.4° | 60.0° |
| H3 | C3 | C4 | H4 | 52.6° | 180.0° |
| H3 | C3 | C4 | H4A | 172.6° | 60.1° |
| H3A | C3 | C4 | C5 | 172.6° | 60.0° |
| H3A | C3 | C4 | H4 | 67.4° | 60.0° |
| H3A | C3 | C4 | H4A | 52.6° | 180.0° |
| C5 | C4 | H4 | H4A | 118.7° | 120.1° |
| C4 | C5 | S5 | H5 | 120.0° | 120.0° |
| C4 | C5 | S5 | H5A | 120.0° | 120.0° |
| C4 | C5 | H5 | H5A | 120.6° | 120.1° |
| C4 | C5 | S5 | HS5 | 180.0° | 180.0° |
| H4 | C4 | C5 | S5 | 63.7° | 60.1° |
| H4 | C4 | C5 | H5 | 56.3° | 180.0° |
| H4 | C4 | C5 | H5A | 176.2° | 59.9° |
| H4A | C4 | C5 | S5 | 176.3° | 60.0° |
| H4A | C4 | C5 | H5 | 63.7° | 60.0° |
| H4A | C4 | C5 | H5A | 56.3° | 180.0° |
| S5 | C5 | H5 | H5A | 120.6° | 120.0° |
| H5 | C5 | S5 | HS5 | 60.0° | 60.0° |
| H5A | C5 | S5 | HS5 | 60.0° | 60.0° |
| CA | CB | CG | O4P | 117.3° | 120.0° |
| CA | CB | CG | HB | 119.5° | 120.0° |
| CA | CB | O4P | HB | 119.4° | 120.0° |
| CA | CB | CG | HG | 180.0° | 60.0° |
| CA | CB | CG | HGA | 60.0° | 180.0° |
| CA | CB | CG | HGB | 60.0° | 59.9° |
| HA | CA | CB | CG | 63.1° | 65.0° |
| HA | CA | CB | O4P | 179.0° | 175.0° |
| HA | CA | CB | HB | 55.8° | 55.0° |
| CG | CB | O4P | HB | 118.8° | 120.0° |
| CB | CG | HG | HGA | 120.0° | 120.0° |
| CB | CG | HG | HGB | 120.0° | 120.0° |
| CB | CG | HGA | HGB | 120.0° | 120.1° |
| O4P | CB | CG | HG | 62.7° | 60.0° |
| O4P | CB | CG | HGA | 177.3° | 59.9° |
| O4P | CB | CG | HGB | 57.2° | 180.0° |
| HB | CB | CG | HG | 60.5° | 180.0° |
| HB | CB | CG | HGA | 59.5° | 60.1° |
| HB | CB | CG | HGB | 179.5° | 60.0° |
| HG | CG | HGA | HGB | 120.0° | 120.0° |
