TPR
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | doub | 1.38Å | 1.41Å | Aromatic |
C1 | C6 | sing | 1.38Å | 1.41Å | Aromatic |
C1 | HC1 | sing | 1.08Å | 1.10Å | |
C2 | C3 | sing | 1.38Å | 1.40Å | Aromatic |
C2 | C7 | sing | 1.51Å | 1.52Å | |
C3 | C4 | doub | 1.38Å | 1.40Å | Aromatic |
C3 | HC3 | sing | 1.08Å | 1.10Å | |
C4 | C5 | sing | 1.38Å | 1.39Å | Aromatic |
C4 | HC4 | sing | 1.08Å | 1.10Å | |
C5 | C6 | doub | 1.38Å | 1.40Å | Aromatic |
C5 | S8 | sing | 1.76Å | 1.78Å | |
C6 | HC6 | sing | 1.08Å | 1.10Å | |
C7 | HC71 | sing | 1.09Å | 1.12Å | |
C7 | HC72 | sing | 1.09Å | 1.11Å | |
C7 | HC73 | sing | 1.09Å | 1.11Å | |
S8 | O9 | doub | 1.42Å | 1.57Å | |
S8 | O10 | doub | 1.42Å | 1.54Å | |
S8 | N | sing | 1.66Å | 1.79Å | |
N | CD | sing | 1.47Å | 1.47Å | |
N | CA | sing | 1.47Å | 1.48Å | |
CD | CG | sing | 1.55Å | 1.52Å | |
CD | HCD1 | sing | 1.09Å | 1.11Å | |
CD | HCD2 | sing | 1.09Å | 1.11Å | |
CG | CB | sing | 1.55Å | 1.54Å | |
CG | HCG1 | sing | 1.09Å | 1.11Å | |
CG | HCG2 | sing | 1.09Å | 1.11Å | |
CB | CA | sing | 1.54Å | 1.54Å | |
CB | HCB1 | sing | 1.09Å | 1.12Å | |
CB | HCB2 | sing | 1.09Å | 1.11Å | |
CA | C | sing | 1.51Å | 1.54Å | |
CA | HCA | sing | 1.09Å | 1.12Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | OXT | sing | 1.34Å | 1.37Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | C6 | 119.9° | 120.0° |
C2 | C1 | HC1 | 120.0° | 120.0° |
C1 | C2 | C3 | 119.1° | 120.0° |
C1 | C2 | C7 | 122.4° | 120.0° |
C6 | C1 | HC1 | 120.1° | 119.9° |
C1 | C6 | C5 | 119.7° | 120.0° |
C1 | C6 | HC6 | 120.5° | 120.1° |
C3 | C2 | C7 | 118.4° | 120.0° |
C2 | C3 | C4 | 121.4° | 120.0° |
C2 | C3 | HC3 | 119.3° | 120.0° |
C2 | C7 | HC71 | 122.4° | 109.5° |
C2 | C7 | HC72 | 107.6° | 109.5° |
C2 | C7 | HC73 | 107.6° | 109.5° |
C4 | C3 | HC3 | 119.3° | 120.0° |
C3 | C4 | C5 | 118.8° | 120.0° |
C3 | C4 | HC4 | 121.0° | 120.0° |
C5 | C4 | HC4 | 120.2° | 120.0° |
C4 | C5 | C6 | 121.1° | 120.0° |
C4 | C5 | S8 | 122.4° | 120.0° |
C6 | C5 | S8 | 116.5° | 120.0° |
C5 | C6 | HC6 | 119.8° | 120.0° |
C5 | S8 | O9 | 109.2° | 105.8° |
C5 | S8 | O10 | 114.9° | 105.8° |
C5 | S8 | N | 107.5° | 107.4° |
HC71 | C7 | HC72 | 107.6° | 109.5° |
HC71 | C7 | HC73 | 107.6° | 109.4° |
HC72 | C7 | HC73 | 102.2° | 109.4° |
O9 | S8 | O10 | 115.9° | 125.3° |
O9 | S8 | N | 105.8° | 105.7° |
O10 | S8 | N | 102.5° | 105.8° |
S8 | N | CD | 113.2° | 125.6° |
S8 | N | CA | 109.9° | 125.7° |
CD | N | CA | 112.6° | 108.7° |
N | CD | CG | 105.6° | 104.9° |
N | CD | HCD1 | 113.6° | 110.4° |
N | CD | HCD2 | 113.6° | 110.3° |
N | CA | CB | 102.3° | 107.3° |
N | CA | C | 113.2° | 109.7° |
N | CA | HCA | 114.5° | 110.1° |
CG | CD | HCD1 | 113.7° | 110.4° |
CG | CD | HCD2 | 113.6° | 110.4° |
CD | CG | CB | 105.9° | 101.6° |
CD | CG | HCG1 | 113.5° | 111.0° |
CD | CG | HCG2 | 113.5° | 111.0° |
HCD1 | CD | HCD2 | 96.9° | 110.4° |
CB | CG | HCG1 | 113.5° | 111.0° |
CB | CG | HCG2 | 113.5° | 111.0° |
CG | CB | CA | 105.4° | 102.8° |
CG | CB | HCB1 | 113.8° | 110.7° |
CG | CB | HCB2 | 113.8° | 110.7° |
HCG1 | CG | HCG2 | 97.0° | 110.9° |
CA | CB | HCB1 | 113.7° | 110.9° |
CA | CB | HCB2 | 113.7° | 110.6° |
CB | CA | C | 116.3° | 109.9° |
CB | CA | HCA | 111.3° | 109.9° |
HCB1 | CB | HCB2 | 96.8° | 110.8° |
C | CA | HCA | 99.9° | 109.9° |
CA | C | O | 121.3° | 120.0° |
CA | C | OXT | 117.1° | 120.0° |
O | C | OXT | 121.6° | 119.9° |
C | OXT | HXT | 117.1° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | C6 | HC1 | 180.0° | 180.0° |
C1 | C2 | C3 | C7 | 179.3° | 179.7° |
C1 | C2 | C3 | C4 | 0.4° | 0.5° |
C1 | C2 | C3 | HC3 | 179.7° | 179.9° |
C2 | C1 | C6 | C5 | 0.1° | 0.1° |
C2 | C1 | C6 | HC6 | 179.9° | 179.9° |
C1 | C2 | C7 | HC71 | 180.0° | 90.0° |
C1 | C2 | C7 | HC72 | 54.7° | 149.9° |
C1 | C2 | C7 | HC73 | 54.8° | 30.0° |
C6 | C1 | C2 | C3 | 0.7° | 0.3° |
C6 | C1 | C2 | C7 | 180.0° | 180.0° |
C1 | C6 | C5 | C4 | 1.3° | 0.1° |
C1 | C6 | C5 | HC6 | 180.0° | 180.0° |
C1 | C6 | C5 | S8 | 178.9° | 179.9° |
HC1 | C1 | C2 | C3 | 179.4° | 179.7° |
HC1 | C1 | C2 | C7 | 0.1° | 0.0° |
HC1 | C1 | C6 | C5 | 179.8° | 179.9° |
HC1 | C1 | C6 | HC6 | 0.1° | 0.0° |
C2 | C3 | C4 | HC3 | 179.9° | 179.5° |
C2 | C3 | C4 | C5 | 0.7° | 0.5° |
C2 | C3 | C4 | HC4 | 179.3° | 179.7° |
C3 | C2 | C7 | HC71 | 0.7° | 90.3° |
C3 | C2 | C7 | HC72 | 124.5° | 29.8° |
C3 | C2 | C7 | HC73 | 126.0° | 149.7° |
C7 | C2 | C3 | C4 | 179.7° | 179.7° |
C7 | C2 | C3 | HC3 | 0.4° | 0.2° |
C2 | C7 | HC71 | HC72 | 125.3° | 120.1° |
C2 | C7 | HC71 | HC73 | 125.2° | 120.0° |
C2 | C7 | HC72 | HC73 | 113.2° | 120.0° |
C3 | C4 | C5 | HC4 | 180.0° | 179.7° |
C3 | C4 | C5 | C6 | 1.5° | 0.3° |
C3 | C4 | C5 | S8 | 179.0° | 179.8° |
HC3 | C3 | C4 | C5 | 179.2° | 179.9° |
HC3 | C3 | C4 | HC4 | 0.8° | 0.2° |
C4 | C5 | C6 | S8 | 177.6° | 179.8° |
C4 | C5 | C6 | HC6 | 178.8° | 179.9° |
C4 | C5 | S8 | O9 | 149.4° | 19.3° |
C4 | C5 | S8 | O10 | 17.2° | 154.1° |
C4 | C5 | S8 | N | 96.2° | 93.2° |
HC4 | C4 | C5 | C6 | 178.5° | 180.0° |
HC4 | C4 | C5 | S8 | 1.0° | 0.1° |
C6 | C5 | S8 | O9 | 33.0° | 160.5° |
C6 | C5 | S8 | O10 | 165.2° | 25.7° |
C6 | C5 | S8 | N | 81.4° | 86.9° |
S8 | C5 | C6 | HC6 | 1.1° | 0.1° |
C5 | S8 | O9 | O10 | 131.7° | 123.2° |
C5 | S8 | O9 | N | 115.4° | 113.7° |
C5 | S8 | O10 | N | 116.3° | 113.8° |
C5 | S8 | N | CD | 60.5° | 85.3° |
C5 | S8 | N | CA | 66.4° | 94.3° |
HC71 | C7 | HC72 | HC73 | 113.1° | 119.9° |
O9 | S8 | O10 | N | 114.7° | 123.0° |
O9 | S8 | N | CD | 56.2° | 162.1° |
O9 | S8 | N | CA | 177.0° | 18.2° |
O10 | S8 | N | CD | 178.0° | 27.3° |
O10 | S8 | N | CA | 55.1° | 153.0° |
S8 | N | CD | CA | 125.4° | 179.7° |
S8 | N | CD | CG | 131.9° | 155.8° |
S8 | N | CD | HCD1 | 102.8° | 85.3° |
S8 | N | CD | HCD2 | 6.6° | 37.0° |
S8 | N | CA | CB | 149.2° | 179.0° |
S8 | N | CA | C | 85.0° | 61.7° |
S8 | N | CA | HCA | 28.6° | 59.5° |
N | CD | CG | HCD1 | 125.2° | 118.9° |
N | CD | CG | HCD2 | 125.2° | 118.8° |
N | CD | HCD1 | HCD2 | 119.6° | 122.2° |
N | CD | CG | CB | 12.2° | 37.0° |
N | CD | CG | HCG1 | 137.4° | 155.1° |
N | CD | CG | HCG2 | 113.1° | 81.0° |
CD | N | CA | CB | 22.0° | 0.7° |
CD | N | CA | C | 147.8° | 118.6° |
CD | N | CA | HCA | 98.6° | 120.3° |
CA | N | CD | CG | 6.4° | 23.9° |
CA | N | CD | HCD1 | 131.7° | 95.0° |
CA | N | CD | HCD2 | 118.8° | 142.8° |
N | CA | CB | CG | 28.3° | 22.5° |
N | CA | CB | C | 123.8° | 119.2° |
N | CA | CB | HCA | 122.7° | 119.7° |
N | CA | CB | HCB1 | 96.9° | 95.9° |
N | CA | CB | HCB2 | 153.6° | 140.8° |
N | CA | C | HCA | 122.2° | 121.2° |
N | CA | C | O | 148.7° | 25.2° |
N | CA | C | OXT | 30.0° | 154.8° |
CG | CD | HCD1 | HCD2 | 119.6° | 122.3° |
CD | CG | CB | HCG1 | 125.3° | 118.1° |
CD | CG | CB | HCG2 | 125.3° | 118.0° |
CD | CG | HCG1 | HCG2 | 119.5° | 123.9° |
CD | CG | CB | CA | 25.5° | 35.7° |
CD | CG | CB | HCB1 | 99.7° | 82.9° |
CD | CG | CB | HCB2 | 150.8° | 153.8° |
HCD1 | CD | CG | CB | 113.1° | 81.9° |
HCD1 | CD | CG | HCG1 | 12.2° | 36.3° |
HCD1 | CD | CG | HCG2 | 121.7° | 160.1° |
HCD2 | CD | CG | CB | 137.4° | 155.8° |
HCD2 | CD | CG | HCG1 | 97.3° | 86.0° |
HCD2 | CD | CG | HCG2 | 12.2° | 37.8° |
CB | CG | HCG1 | HCG2 | 119.4° | 123.9° |
CG | CB | CA | HCB1 | 125.3° | 118.4° |
CG | CB | CA | HCB2 | 125.2° | 118.3° |
CG | CB | HCB1 | HCB2 | 119.7° | 123.3° |
CG | CB | CA | C | 152.1° | 141.7° |
CG | CB | CA | HCA | 94.4° | 97.2° |
HCG1 | CG | CB | CA | 150.8° | 153.8° |
HCG1 | CG | CB | HCB1 | 25.6° | 35.3° |
HCG1 | CG | CB | HCB2 | 84.0° | 88.1° |
HCG2 | CG | CB | CA | 99.7° | 82.4° |
HCG2 | CG | CB | HCB1 | 135.1° | 159.1° |
HCG2 | CG | CB | HCB2 | 25.5° | 35.7° |
CA | CB | HCB1 | HCB2 | 119.6° | 123.2° |
CB | CA | C | HCA | 119.9° | 121.0° |
CB | CA | C | O | 93.4° | 92.6° |
CB | CA | C | OXT | 87.9° | 87.4° |
HCB1 | CB | CA | C | 26.9° | 23.4° |
HCB1 | CB | CA | HCA | 140.3° | 144.4° |
HCB2 | CB | CA | C | 82.6° | 100.0° |
HCB2 | CB | CA | HCA | 30.9° | 21.0° |
CA | C | O | OXT | 178.6° | 180.0° |
CA | C | OXT | HXT | 180.0° | 179.9° |
HCA | CA | C | O | 26.5° | 146.4° |
HCA | CA | C | OXT | 152.2° | 33.6° |
O | C | OXT | HXT | 1.3° | 0.1° |