Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

TOY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11O11sing1.43Å1.40Å
C11C21sing1.53Å1.55Å
C11O51sing1.43Å1.46Å
C11H11sing1.09Å1.12Å
O11C42sing1.43Å1.45Å
C21N21sing1.47Å1.48Å
C21C31sing1.53Å1.54Å
C21H21sing1.09Å1.12Å
N21HN21sing1.01Å1.02Å
N21HN22sing1.01Å1.02Å
C31C41sing1.53Å1.54Å
C31H311sing1.09Å1.11Å
C31H312sing1.09Å1.12Å
C41O41sing1.43Å1.42Å
C41C51sing1.53Å1.55Å
C41H41sing1.09Å1.12Å
O41H41Osing0.97Å0.95Å
C51O51sing1.43Å1.46Å
C51C61sing1.53Å1.53Å
C51H51sing1.09Å1.11Å
C61N61sing1.47Å1.48Å
C61H611sing1.09Å1.11Å
C61H612sing1.09Å1.11Å
N61HN61sing1.01Å1.02Å
N61HN62sing1.01Å1.02Å
C12N12sing1.47Å1.48Å
C12C22sing1.53Å1.53Å
C12C62sing1.53Å1.54Å
C12H12sing1.09Å1.11Å
N12HN11sing1.01Å1.02Å
N12HN12sing1.01Å1.02Å
C22C32sing1.53Å1.55Å
C22H221sing1.09Å1.11Å
C22H222sing1.09Å1.12Å
C32N32sing1.47Å1.49Å
C32C42sing1.53Å1.54Å
C32H32sing1.09Å1.12Å
N32HN1sing1.01Å1.02Å
N32HN2sing1.01Å1.02Å
C42C52sing1.53Å1.56Å
C42H42sing1.09Å1.12Å
C52O52sing1.43Å1.42Å
C52C62sing1.53Å1.55Å
C52H52sing1.09Å1.11Å
O52H52Osing0.97Å0.95Å
C62O62sing1.43Å1.45Å
C62H62sing1.09Å1.12Å
O62C13sing1.43Å1.40Å
C13C23sing1.53Å1.54Å
C13O53sing1.43Å1.46Å
C13H13sing1.09Å1.12Å
C23O23sing1.43Å1.42Å
C23C33sing1.53Å1.53Å
C23H23sing1.09Å1.11Å
O23H23Osing0.97Å0.95Å
C33N33sing1.47Å1.48Å
C33C43sing1.53Å1.54Å
C33H33sing1.09Å1.12Å
N33HN31sing1.01Å1.02Å
N33HN32sing1.01Å1.02Å
C43O43sing1.43Å1.43Å
C43C53sing1.53Å1.55Å
C43H43sing1.09Å1.11Å
O43H43Osing0.97Å0.95Å
C53O53sing1.43Å1.48Å
C53C63sing1.53Å1.52Å
C53H53sing1.09Å1.12Å
C63O63sing1.43Å1.42Å
C63H631sing1.09Å1.12Å
C63H632sing1.09Å1.12Å
O63H63Osing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O11C11C21110.1°109.4°
O11C11O51108.4°109.4°
O11C11H11110.4°109.4°
C11O11C42117.8°106.8°
C21C11O51111.1°109.8°
C21C11H11107.6°109.4°
C11C21N21112.8°109.5°
C11C21C31110.9°109.0°
C11C21H21106.7°109.6°
O51C11H11109.3°109.5°
C11O51C51114.7°107.7°
O11C42C32108.5°109.5°
O11C42C52109.4°109.5°
O11C42H42110.4°109.5°
N21C21C31110.8°109.6°
N21C21H21106.7°109.5°
C21N21HN21111.0°106.7°
C21N21HN22112.8°106.7°
C31C21H21108.8°109.5°
C21C31C41109.3°108.6°
C21C31H311112.3°109.6°
C21C31H312112.3°109.6°
HN21N21HN22111.0°106.7°
C41C31H311112.2°109.6°
C41C31H312112.3°109.6°
C31C41O41109.7°109.6°
C31C41C51109.4°109.0°
C31C41H41109.9°109.5°
H311C31H31298.2°109.8°
O41C41C51111.1°109.5°
O41C41H41108.2°109.6°
C41O41H41O109.7°106.8°
C51C41H41108.5°109.7°
C41C51O51109.8°109.7°
C41C51C61113.5°109.4°
C41C51H51105.8°109.4°
O51C51C61107.2°109.4°
O51C51H51112.3°109.4°
C61C51H51108.5°109.5°
C51C61N61111.9°109.4°
C51C61H611111.3°109.6°
C51C61H612111.3°109.5°
N61C61H611111.3°109.5°
N61C61H612111.3°109.5°
C61N61HN61111.3°106.7°
C61N61HN62111.9°106.6°
H611C61H61299.1°109.5°
HN61N61HN62111.3°106.7°
N12C12C22110.2°109.5°
N12C12C62109.2°109.5°
N12C12H12109.2°109.5°
C12N12HN11111.9°106.7°
C12N12HN12110.2°106.7°
C22C12C62109.6°109.5°
C22C12H12108.7°109.4°
C12C22C32109.6°109.5°
C12C22H221112.2°109.5°
C12C22H222112.2°109.4°
C62C12H12109.8°109.5°
C12C62C52111.4°109.4°
C12C62O62109.1°109.5°
C12C62H62108.3°109.5°
HN11N12HN12111.9°106.6°
C32C22H221112.2°109.6°
C32C22H222112.1°109.4°
C22C32N32109.0°109.5°
C22C32C42110.7°109.5°
C22C32H32110.5°109.4°
H221C22H22298.2°109.4°
N32C32C42113.7°109.5°
N32C32H32107.3°109.4°
C32N32HN1112.4°106.7°
C32N32HN2109.0°106.7°
C42C32H32105.5°109.5°
C32C42C52110.4°109.5°
C32C42H42109.5°109.4°
HN1N32HN2112.4°106.7°
C52C42H42108.6°109.5°
C42C52O52109.2°109.5°
C42C52C62111.1°109.5°
C42C52H52108.4°109.5°
O52C52C62108.9°109.4°
O52C52H52110.6°109.5°
C52O52H52O109.2°106.8°
C62C52H52108.7°109.5°
C52C62O62109.4°109.5°
C52C62H62108.1°109.4°
O62C62H62110.4°109.5°
C62O62C13117.9°106.8°
O62C13C23109.8°109.5°
O62C13O53109.4°109.4°
O62C13H13109.4°109.4°
C23C13O53109.6°109.7°
C23C13H13109.1°109.4°
C13C23O23110.0°109.5°
C13C23C33109.4°109.1°
C13C23H23109.4°109.7°
O53C13H13109.5°109.3°
C13O53C53115.6°107.5°
O23C23C33110.1°109.5°
O23C23H23108.7°109.5°
C23O23H23O110.0°106.8°
C33C23H23109.3°109.5°
C23C33N33111.5°109.8°
C23C33C43108.8°108.6°
C23C33H33109.0°109.6°
N33C33C43110.7°109.6°
N33C33H33107.0°109.6°
C33N33HN31111.5°106.7°
C33N33HN32111.5°106.7°
C43C33H33109.8°109.6°
C33C43O43110.2°109.7°
C33C43C53110.3°109.0°
C33C43H43108.8°109.5°
HN31N33HN32111.4°106.7°
O43C43C53110.4°109.5°
O43C43H43108.6°109.5°
C43O43H43O110.2°106.9°
C53C43H43108.5°109.6°
C43C53O53111.9°109.8°
C43C53C63112.0°109.4°
C43C53H53105.2°109.5°
O53C53C63106.9°109.4°
O53C53H53110.5°109.4°
C63C53H53110.4°109.4°
C53C63O63111.5°109.5°
C53C63H631111.4°109.4°
C53C63H632111.4°109.5°
O63C63H631111.5°109.5°
O63C63H632111.4°109.5°
C63O63H63O111.5°106.8°
H631C63H63299.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O11C11C21O51120.1°120.0°
O11C11C21H11120.3°119.8°
O11C11O51H11120.4°119.8°
O11C11C21N2157.3°61.1°
O11C11C21C3167.6°58.8°
O11C11C21H21174.1°178.7°
O11C11O51C5166.0°52.4°
C11O11C42C32150.8°152.3°
C11O11C42C5288.7°87.7°
C11O11C42H4230.8°32.3°
C21C11O51H11118.6°120.1°
C21C11O11C42163.0°164.4°
C11C21N21C31125.0°119.6°
C11C21N21H21116.8°120.2°
C11C21C31H21117.0°119.9°
C11C21N21HN2154.7°180.0°
C11C21N21HN22180.0°66.2°
C11C21C31C4155.1°53.8°
C11C21C31H311179.7°66.0°
C11C21C31H31270.2°173.5°
C21C11O51C5155.1°67.6°
O51C11O11C4275.3°75.4°
O51C11C21N21177.4°178.8°
O51C11C21C3152.4°61.2°
O51C11C21H2165.8°58.7°
C11O51C51C4158.3°67.6°
C11O51C51C61178.0°172.4°
C11O51C51H5159.1°52.4°
H11C11O11C4244.4°44.5°
H11C11C21N2163.0°58.7°
H11C11C21C31172.0°178.6°
H11C11C21H2153.8°61.5°
H11C11O51C51173.6°172.3°
O11C42C32C22176.5°180.0°
O11C42C32N3260.4°59.9°
O11C42C32C52119.9°120.0°
O11C42C32H42120.6°120.0°
O11C42C32H3256.9°60.0°
O11C42C52H42120.6°120.0°
O11C42C52O5266.9°60.0°
O11C42C52C62173.0°180.0°
O11C42C52H5253.6°60.0°
N21C21C31H21117.0°120.2°
C21N21HN21HN22126.3°113.8°
N21C21C31C41178.9°173.7°
N21C21C31H31153.7°53.9°
N21C21C31H31255.8°66.7°
C31C21N21HN21179.7°60.4°
C31C21N21HN2255.0°53.4°
C21C31C41H311125.2°119.7°
C21C31C41H312125.3°119.7°
C21C31H311H312118.2°120.5°
C21C31C41O41179.7°173.6°
C21C31C41C5158.2°53.8°
C21C31C41H4160.8°66.2°
H21C21N21HN2162.1°59.8°
H21C21N21HN2263.2°173.6°
H21C21C31C4161.9°66.1°
H21C21C31H31163.3°174.1°
H21C21C31H312172.8°53.5°
C41C31H311H312118.2°120.4°
C31C41O41C51121.1°119.5°
C31C41O41H41119.9°120.2°
C31C41C51H41119.9°119.9°
C31C41O41H41O180.0°60.0°
C31C41C51O5158.9°61.4°
C31C41C51C61178.8°178.6°
C31C41C51H5162.4°58.7°
H311C31C41O4154.5°53.9°
H311C31C41C51176.6°65.9°
H311C31C41H4164.4°174.1°
H312C31C41O4155.0°66.7°
H312C31C41C5167.1°173.5°
H312C31C41H41173.9°53.5°
O41C41C51H41118.8°120.2°
O41C41C51O51179.8°178.8°
O41C41C51C6160.0°58.8°
O41C41C51H5158.8°61.1°
C51C41O41H41O58.9°179.5°
C41C51O51C61123.7°120.0°
C41C51O51H51117.4°120.1°
C41C51C61H51117.3°119.9°
C41C51C61N6176.4°179.9°
C41C51C61H611158.3°60.1°
C41C51C61H61248.9°59.9°
H41C41O41H41O60.1°60.2°
H41C41C51O5161.0°58.5°
H41C41C51C6158.9°61.5°
H41C41C51H51177.7°178.6°
O51C51C61H51121.4°119.9°
O51C51C61N61162.3°59.9°
O51C51C61H61137.0°60.1°
O51C51C61H61272.5°179.9°
C51C61N61H611125.3°120.1°
C51C61N61H612125.2°119.9°
C51C61H611H612117.2°120.0°
C51C61N61HN6154.8°180.0°
C51C61N61HN62180.0°66.3°
H51C51C61N6140.9°60.0°
H51C51C61H61184.4°180.0°
H51C51C61H612166.1°60.0°
N61C61H611H612117.2°120.0°
C61N61HN61HN62125.6°113.7°
H611C61N61HN61180.0°60.0°
H611C61N61HN6254.7°53.8°
H612C61N61HN6170.5°60.0°
H612C61N61HN6254.8°173.8°
N12C12C22C62120.2°120.0°
N12C12C22H12119.7°120.0°
N12C12C62H12119.7°120.0°
C12N12HN11HN12124.3°113.8°
N12C12C22C32179.4°179.9°
N12C12C22H22154.1°59.9°
N12C12C22H22255.3°60.1°
N12C12C62C52179.0°180.0°
N12C12C62O6260.0°60.0°
N12C12C62H6260.3°60.1°
C22C12C62H12119.4°120.0°
C22C12N12HN1154.7°59.9°
C22C12N12HN12180.0°53.8°
C12C22C32H221125.3°120.1°
C12C22C32H222125.3°119.9°
C12C22H221H222118.1°119.9°
C12C22C32N32173.9°180.0°
C12C22C32C4260.3°59.9°
C12C22C32H3256.2°60.1°
C22C12C62C5258.2°60.0°
C22C12C62O62179.1°180.0°
C22C12C62H6260.6°60.0°
C62C12N12HN1165.8°180.0°
C62C12N12HN1259.5°66.2°
C62C12C22C3260.4°59.9°
C62C12C22H221174.3°179.9°
C62C12C22H22264.9°60.0°
C12C62C52C4254.9°60.0°
C12C62C52O52175.2°180.0°
C12C62C52O62120.8°120.0°
C12C62C52H62118.9°119.9°
C12C62C52H5264.2°60.0°
C12C62O62H62119.0°120.0°
C12C62O62C13114.6°89.9°
H12C12N12HN11174.2°60.1°
H12C12N12HN1260.6°173.8°
H12C12C22C3259.7°60.1°
H12C12C22H22165.6°60.1°
H12C12C22H222175.1°180.0°
H12C12C62C5261.2°60.0°
H12C12C62O6259.7°60.0°
H12C12C62H62180.0°179.9°
C32C22H221H222118.0°120.0°
C22C32N32C42124.0°120.1°
C22C32N32H32119.7°119.9°
C22C32C42H32119.6°120.0°
C22C32N32HN154.7°49.2°
C22C32N32HN2180.0°163.0°
C22C32C42C5256.6°60.0°
C22C32C42H4262.9°60.0°
H221C22C32N3248.7°59.9°
H221C22C32C42174.4°180.0°
H221C22C32H3269.1°60.0°
H222C22C32N3260.8°60.1°
H222C22C32C4265.0°60.0°
H222C22C32H32178.5°180.0°
N32C32C42H32117.4°120.0°
C32N32HN1HN2123.4°113.8°
N32C32C42C52179.7°180.0°
N32C32C42H4260.2°60.0°
C42C32N32HN1178.7°169.3°
C42C32N32HN256.0°76.8°
C32C42C52H42120.1°120.0°
C32C42C52O52173.8°180.0°
C32C42C52C6253.6°60.0°
C32C42C52H5265.7°60.0°
H32C32N32HN165.0°70.7°
H32C32N32HN260.3°43.1°
H32C32C42C5263.0°60.0°
H32C32C42H42177.5°180.0°
C42C52O52C62121.5°120.0°
C42C52O52H52119.1°120.0°
C42C52C62H52119.1°120.0°
C42C52O52H52O180.0°171.9°
C42C52C62O62175.7°180.0°
C42C52C62H6264.0°59.9°
H42C42C52O5253.7°60.0°
H42C42C52C6266.4°60.0°
H42C42C52H52174.2°180.0°
O52C52C62H52120.5°120.0°
O52C52C62O6264.0°60.0°
O52C52C62H6256.3°60.1°
C62C52O52H52O58.5°68.1°
C52C62O62H62118.8°120.0°
C52C62O62C13123.3°150.2°
H52C52O52H52O60.8°51.9°
H52C52C62O6256.5°60.0°
H52C52C62H62176.8°180.0°
C62O62C13C23156.1°164.5°
C62O62C13O5383.5°75.2°
C62O62C13H1336.4°44.5°
H62C62O62C134.4°30.2°
O62C13C23O53120.2°120.1°
O62C13C23H13119.9°119.9°
O62C13O53H13119.9°119.8°
O62C13C23O2360.3°61.1°
O62C13C23C3360.7°58.7°
O62C13C23H23179.6°178.7°
O62C13O53C5365.5°52.5°
C23C13O53H13119.7°120.0°
C13C23O23C33120.6°119.6°
C13C23O23H23119.8°120.3°
C13C23C33H23119.8°120.0°
C13C23O23H23O180.0°60.4°
C13C23C33N33176.0°173.6°
C13C23C33C4361.6°53.8°
C13C23C33H3358.1°65.9°
C23C13O53C5355.0°67.6°
O53C13C23O23179.5°178.7°
O53C13C23C3359.5°61.4°
O53C13C23H2360.2°58.5°
C13O53C53C4351.3°67.6°
C13O53C53C63174.2°172.4°
C13O53C53H5365.7°52.6°
H13C13C23O2359.6°58.8°
H13C13C23C33179.4°178.6°
H13C13C23H2359.7°61.4°
H13C13O53C53174.7°172.3°
O23C23C33H23119.3°120.1°
O23C23C33N3355.1°66.5°
O23C23C33C43177.5°173.6°
O23C23C33H3362.8°54.0°
C33C23O23H23O59.4°180.0°
C23C33N33C43121.2°119.2°
C23C33N33H33119.1°120.5°
C23C33C43H33119.2°119.7°
C23C33N33HN3154.8°60.8°
C23C33N33HN32180.0°53.0°
C23C33C43O43179.3°173.6°
C23C33C43C5357.1°53.7°
C23C33C43H4361.7°66.2°
H23C23O23H23O60.2°59.9°
H23C23C33N3364.2°53.6°
H23C23C33C4358.2°66.2°
H23C23C33H33177.9°174.1°
N33C33C43H33117.9°120.3°
C33N33HN31HN32125.2°113.7°
N33C33C43O4357.8°66.4°
N33C33C43C53180.0°173.7°
N33C33C43H4361.1°53.8°
C43C33N33HN3166.5°180.0°
C43C33N33HN3258.7°66.3°
C33C43O43C53122.1°119.6°
C33C43O43H43119.0°120.2°
C33C43C53H43119.0°119.8°
C33C43O43H43O180.0°179.6°
C33C43C53O5351.1°61.2°
C33C43C53C63171.1°178.7°
C33C43C53H5369.0°58.9°
H33C33N33HN31173.9°59.7°
H33C33N33HN3260.9°173.5°
H33C33C43O4360.1°53.9°
H33C33C43C5362.1°66.0°
H33C33C43H43179.0°174.1°
O43C43C53H43118.9°120.1°
O43C43C53O53173.1°178.7°
O43C43C53C6366.9°58.7°
O43C43C53H5353.1°61.2°
C53C43O43H43O57.9°60.0°
C43C53O53C63122.9°120.0°
C43C53O53H53116.9°120.2°
C43C53C63H53116.9°119.9°
C43C53C63O6364.3°175.7°
C43C53C63H63161.0°55.7°
C43C53C63H632170.5°64.3°
H43C43O43H43O61.0°60.2°
H43C43C53O5368.0°58.6°
H43C43C53C6352.0°61.4°
H43C43C53H53172.0°178.7°
O53C53C63H53120.2°119.9°
O53C53C63O6358.6°64.0°
O53C53C63H631176.1°176.0°
O53C53C63H63266.6°56.0°
C53C63O63H631125.2°119.9°
C53C63O63H632125.2°120.0°
C53C63H631H632117.3°120.0°
C53C63O63H63O180.0°175.0°
H53C53C63O63178.8°55.8°
H53C53C63H63155.9°64.2°
H53C53C63H63253.6°175.8°
O63C63H631H632117.4°120.0°
H631C63O63H63O54.7°65.0°
H632C63O63H63O54.8°55.0°

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon