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Summary Geometry Related PDB entries

TOM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O8	C9	doub	1.22Å	1.23Å
C9	C10	sing	1.51Å	1.44Å
C9	C8	sing	1.48Å	1.50Å
C10	O10	doub	1.21Å	1.25Å
C10	O11	sing	1.34Å	1.25Å
O11	HO11	sing	0.98Å	0.95Å
C8	C7	doub	1.35Å	1.31Å
C8	H8	sing	1.08Å	1.08Å
C7	C1	sing	1.46Å	1.52Å
C7	H7	sing	1.09Å	1.08Å
C1	C2	sing	1.39Å	1.37Å	Aromatic
C1	C6	doub	1.39Å	1.38Å	Aromatic
C6	C5	sing	1.39Å	1.39Å	Aromatic
C6	H6	sing	1.09Å	1.08Å
C5	C4	doub	1.39Å	1.41Å	Aromatic
C5	H5	sing	1.09Å	1.08Å
C4	C3	sing	1.39Å	1.38Å	Aromatic
C4	H4	sing	1.09Å	1.08Å
C3	C2	doub	1.40Å	1.41Å	Aromatic
C3	H3	sing	1.09Å	1.08Å
C2	O2	sing	1.36Å	1.35Å
O2	C11	sing	1.43Å	1.43Å
C11	H111	sing	1.09Å	1.10Å
C11	H112	sing	1.09Å	1.10Å
C11	H113	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O8	C9	C10	124.4°	119.1°
O8	C9	C8	123.1°	124.6°
C10	C9	C8	112.4°	116.4°
C9	C10	O10	119.8°	123.4°
C9	C10	O11	115.1°	109.8°
C9	C8	C7	125.8°	120.2°
C9	C8	H8	117.1°	117.9°
O10	C10	O11	124.9°	126.8°
C10	O11	HO11	109.5°	112.2°
C7	C8	H8	117.1°	121.8°
C8	C7	C1	124.6°	125.2°
C8	C7	H7	117.7°	118.8°
C1	C7	H7	117.7°	116.0°
C7	C1	C2	123.8°	121.0°
C7	C1	C6	114.9°	119.0°
C2	C1	C6	121.2°	120.0°
C1	C2	C3	120.9°	120.0°
C1	C2	O2	116.7°	121.3°
C1	C6	C5	119.4°	120.0°
C1	C6	H6	120.3°	120.9°
C5	C6	H6	120.3°	119.1°
C6	C5	C4	118.7°	120.0°
C6	C5	H5	120.6°	120.0°
C4	C5	H5	120.6°	120.0°
C5	C4	C3	122.3°	120.0°
C5	C4	H4	118.8°	120.0°
C3	C4	H4	118.9°	120.0°
C4	C3	C2	117.4°	120.0°
C4	C3	H3	121.3°	119.6°
C2	C3	H3	121.3°	120.4°
C3	C2	O2	122.4°	118.8°
C2	O2	C11	112.8°	116.9°
O2	C11	H111	109.5°	109.5°
O2	C11	H112	109.5°	109.5°
O2	C11	H113	109.4°	109.0°
H111	C11	H112	109.4°	110.1°
H111	C11	H113	109.5°	109.4°
H112	C11	H113	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O8	C9	C10	C8	176.1°	179.5°
O8	C9	C10	O10	109.4°	179.8°
O8	C9	C10	O11	75.4°	0.0°
O8	C9	C8	C7	0.1°	0.3°
O8	C9	C8	H8	179.9°	179.5°
C9	C10	O10	O11	174.7°	179.8°
C9	C10	O11	HO11	174.9°	179.8°
C10	C9	C8	C7	176.0°	179.2°
C10	C9	C8	H8	3.9°	0.0°
C8	C9	C10	O10	74.5°	0.7°
C8	C9	C10	O11	100.7°	179.5°
C9	C8	C7	H8	180.0°	179.2°
C9	C8	C7	C1	53.5°	179.5°
C9	C8	C7	H7	126.6°	0.5°
O10	C10	O11	HO11	0.0°	0.0°
C8	C7	C1	H7	180.0°	179.0°
C8	C7	C1	C2	43.6°	148.9°
C8	C7	C1	C6	138.1°	31.1°
H8	C8	C7	C1	126.6°	0.4°
H8	C8	C7	H7	53.4°	178.6°
C7	C1	C2	C6	178.2°	180.0°
C7	C1	C6	C5	178.8°	180.0°
C7	C1	C6	H6	1.2°	0.0°
C7	C1	C2	C3	179.8°	180.0°
C7	C1	C2	O2	0.3°	0.0°
H7	C7	C1	C2	136.3°	30.1°
H7	C7	C1	C6	41.9°	149.9°
C2	C1	C6	C5	2.9°	0.0°
C2	C1	C6	H6	177.1°	180.0°
C1	C2	C3	C4	0.9°	0.0°
C1	C2	C3	O2	179.5°	180.0°
C1	C2	C3	H3	179.1°	180.0°
C1	C2	O2	C11	167.2°	90.0°
C1	C6	C5	H6	180.0°	179.9°
C1	C6	C5	C4	3.4°	0.0°
C1	C6	C5	H5	176.7°	180.0°
C6	C1	C2	C3	1.7°	0.0°
C6	C1	C2	O2	177.8°	180.0°
C6	C5	C4	H5	180.0°	179.9°
C6	C5	C4	C3	2.7°	0.0°
C6	C5	C4	H4	177.3°	180.0°
H6	C6	C5	C4	176.6°	180.0°
H6	C6	C5	H5	3.3°	0.1°
C5	C4	C3	H4	180.0°	180.0°
C5	C4	C3	C2	1.5°	0.0°
C5	C4	C3	H3	178.5°	180.0°
H5	C5	C4	C3	177.3°	180.0°
H5	C5	C4	H4	2.7°	0.0°
C4	C3	C2	H3	180.0°	179.9°
C4	C3	C2	O2	178.6°	180.0°
H4	C4	C3	C2	178.5°	180.0°
H4	C4	C3	H3	1.5°	0.0°
C3	C2	O2	C11	12.3°	90.1°
H3	C3	C2	O2	1.4°	0.1°
C2	O2	C11	H111	60.4°	81.4°
C2	O2	C11	H112	179.7°	39.4°
C2	O2	C11	H113	59.7°	159.0°
O2	C11	H111	H112	120.0°	120.5°
O2	C11	H111	H113	120.0°	119.3°
O2	C11	H112	H113	120.0°	119.3°
H111	C11	H112	H113	120.0°	120.2°

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