TOG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C51	doub	0.00Å	1.25Å
O3	C51	sing	0.00Å	1.26Å
C51	C41	sing	0.00Å	1.52Å
C41	C3	sing	0.00Å	1.53Å
O22	P2	doub	0.00Å	1.51Å
C3	C21	sing	0.00Å	1.51Å
O23	P2	sing	0.00Å	1.51Å
P2	O11	sing	0.00Å	1.63Å
P2	O21	sing	0.00Å	1.52Å
O11	P1	sing	0.00Å	1.62Å
O5	C21	sing	0.00Å	1.33Å
C21	C2	sing	0.00Å	1.50Å
S1	C2	sing	0.00Å	1.75Å	Aromatic
S1	C5	sing	0.00Å	1.72Å	Aromatic
C2	N3	doub	0.00Å	1.35Å	Aromatic
N4'	C4'	sing	0.00Å	1.35Å
O12	P1	doub	0.00Å	1.51Å
P1	O5G	sing	0.00Å	1.61Å
P1	O13	sing	0.00Å	1.51Å
C5B	O5G	sing	0.00Å	1.44Å
C5B	C5A	sing	0.00Å	1.53Å
C5	C5A	sing	0.00Å	1.52Å
C5	C4	doub	0.00Å	1.43Å	Aromatic
N3	C35	sing	0.00Å	1.46Å
N3	C4	sing	0.00Å	1.40Å	Aromatic
C4'	N3'	doub	0.00Å	1.35Å	Aromatic
C4'	C5'	sing	0.00Å	1.48Å	Aromatic
N3'	C2'	sing	0.00Å	1.35Å	Aromatic
C35	C5'	sing	0.00Å	1.52Å
C4	C4A	sing	0.00Å	1.50Å
C5'	C6'	doub	0.00Å	1.37Å	Aromatic
C2'	C2A	sing	0.00Å	1.50Å
C2'	N1'	doub	0.00Å	1.34Å	Aromatic
C6'	N1'	sing	0.00Å	1.33Å	Aromatic
O21	H1	sing	0.00Å	0.95Å
O23	H2	sing	0.00Å	0.95Å
O13	H3	sing	0.00Å	0.95Å
C5B	H4	sing	0.00Å	1.10Å
C5B	H5	sing	0.00Å	1.10Å
C5A	H6	sing	0.00Å	1.10Å
C5A	H7	sing	0.00Å	1.10Å
C4A	H8	sing	0.00Å	1.10Å
C4A	H9	sing	0.00Å	1.10Å
C4A	H10	sing	0.00Å	1.10Å
C35	H11	sing	0.00Å	1.10Å
C35	H12	sing	0.00Å	1.10Å
C6'	H13	sing	0.00Å	1.08Å
N4'	H14	sing	0.00Å	1.00Å
N4'	H15	sing	0.00Å	1.00Å
C2A	H16	sing	0.00Å	1.10Å
C2A	H17	sing	0.00Å	1.10Å
C2A	H18	sing	0.00Å	1.10Å
O3	H19	sing	0.00Å	0.95Å
C41	H20	sing	0.00Å	1.10Å
C41	H21	sing	0.00Å	1.10Å
C3	H22	sing	0.00Å	1.10Å
C3	H23	sing	0.00Å	1.10Å
O5	H25	sing	0.00Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C51	O3	122.1°	90.0°
O4	C51	C41	117.1°	90.0°
O3	C51	C41	120.8°	90.0°
C51	O3	H19	109.5°	90.0°
C51	C41	C3	112.3°	90.0°
C51	C41	H20	108.7°	90.0°
C51	C41	H21	108.8°	90.0°
C41	C3	C21	111.0°	90.0°
C3	C41	H20	108.8°	90.0°
C3	C41	H21	108.8°	90.0°
C41	C3	H22	109.1°	90.0°
C41	C3	H23	109.1°	90.0°
O22	P2	O23	112.6°	90.0°
O22	P2	O11	100.0°	90.0°
O22	P2	O21	116.3°	90.0°
C3	C21	O5	107.4°	90.0°
C3	C21	C2	114.2°	90.0°
C21	C3	H22	109.1°	90.0°
C21	C3	H23	109.1°	90.0°
O23	P2	O11	108.7°	90.0°
O23	P2	O21	110.7°	90.0°
P2	O23	H2	109.5°	90.0°
O11	P2	O21	107.8°	90.0°
P2	O11	P1	126.5°	90.0°
P2	O21	H1	109.5°	90.0°
O11	P1	O12	106.8°	90.0°
O11	P1	O5G	104.9°	90.0°
O11	P1	O13	112.3°	90.0°
O5	C21	C2	98.3°	90.0°
C21	O5	H25	109.5°	90.0°
C21	C2	S1	115.3°	90.0°
C21	C2	N3	128.3°	90.0°
C2	S1	C5	88.4°	90.0°
S1	C2	N3	115.4°	90.0°
S1	C5	C5A	117.4°	90.0°
S1	C5	C4	113.1°	90.0°
C2	N3	C35	123.6°	90.0°
C2	N3	C4	111.7°	90.0°
N4'	C4'	N3'	119.2°	90.0°
N4'	C4'	C5'	121.6°	90.0°
C4'	N4'	H14	109.5°	90.0°
C4'	N4'	H15	109.4°	90.0°
O12	P1	O5G	109.8°	90.0°
O12	P1	O13	115.8°	90.0°
O5G	P1	O13	106.7°	90.0°
P1	O5G	C5B	122.3°	90.0°
P1	O13	H3	109.5°	90.0°
O5G	C5B	C5A	108.3°	90.0°
O5G	C5B	H4	109.8°	90.0°
O5G	C5B	H5	109.8°	90.0°
C5B	C5A	C5	114.1°	90.0°
C5A	C5B	H4	109.8°	90.0°
C5A	C5B	H5	109.8°	90.0°
C5B	C5A	H6	108.3°	90.0°
C5B	C5A	H7	108.3°	90.0°
C5A	C5	C4	129.5°	90.0°
C5	C5A	H6	108.3°	90.0°
C5	C5A	H7	108.3°	90.0°
C5	C4	N3	111.3°	90.0°
C5	C4	C4A	122.1°	90.0°
C35	N3	C4	124.7°	90.0°
N3	C35	C5'	110.1°	90.0°
N3	C35	H11	109.3°	90.0°
N3	C35	H12	109.3°	90.0°
N3	C4	C4A	126.6°	90.0°
N3'	C4'	C5'	119.2°	90.0°
C4'	N3'	C2'	120.1°	90.0°
C4'	C5'	C35	123.4°	90.0°
C4'	C5'	C6'	117.0°	90.0°
N3'	C2'	C2A	120.1°	90.0°
N3'	C2'	N1'	121.1°	90.0°
C35	C5'	C6'	119.6°	90.0°
C5'	C35	H11	109.3°	90.0°
C5'	C35	H12	109.3°	90.0°
C4	C4A	H8	109.5°	90.0°
C4	C4A	H9	109.5°	90.0°
C4	C4A	H10	109.4°	90.0°
C5'	C6'	N1'	119.9°	90.0°
C5'	C6'	H13	120.0°	90.0°
C2A	C2'	N1'	118.8°	90.0°
C2'	C2A	H16	109.5°	90.0°
C2'	C2A	H17	109.5°	90.0°
C2'	C2A	H18	109.5°	90.0°
C2'	N1'	C6'	122.7°	90.0°
N1'	C6'	H13	120.1°	90.0°
H4	C5B	H5	109.5°	90.0°
H6	C5A	H7	109.4°	90.0°
H8	C4A	H9	109.4°	90.0°
H8	C4A	H10	109.5°	90.0°
H9	C4A	H10	109.5°	90.0°
H11	C35	H12	109.5°	90.0°
H14	N4'	H15	109.5°	90.0°
H16	C2A	H17	109.4°	90.0°
H16	C2A	H18	109.5°	90.0°
H17	C2A	H18	109.5°	90.0°
H20	C41	H21	109.5°	90.0°
H22	C3	H23	109.5°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C51	O3	C41	179.3°	90.0°
O4	C51	C41	C3	169.0°	90.0°
O4	C51	O3	H19	0.0°	90.0°
O4	C51	C41	H20	48.6°	90.0°
O4	C51	C41	H21	70.6°	90.0°
O3	C51	C41	C3	11.7°	90.0°
O3	C51	C41	H20	132.1°	90.0°
O3	C51	C41	H21	108.7°	90.0°
C51	C41	C3	H20	120.4°	90.0°
C51	C41	C3	H21	120.4°	90.0°
C51	C41	C3	C21	178.1°	90.0°
C41	C51	O3	H19	179.3°	90.0°
C51	C41	H20	H21	118.7°	90.0°
C51	C41	C3	H22	57.9°	90.0°
C51	C41	C3	H23	61.7°	90.0°
C41	C3	C21	H22	120.2°	90.0°
C41	C3	C21	H23	120.2°	90.0°
C41	C3	C21	O5	77.5°	90.0°
C41	C3	C21	C2	174.6°	90.0°
C3	C41	H20	H21	118.7°	90.0°
C41	C3	H22	H23	119.3°	90.0°
O22	P2	O23	O11	109.8°	90.0°
O22	P2	O23	O21	132.0°	90.0°
O22	P2	O11	O21	121.9°	90.0°
O22	P2	O11	P1	137.8°	90.0°
O22	P2	O21	H1	0.0°	90.0°
O22	P2	O23	H2	0.0°	90.0°
C3	C21	O5	C2	118.7°	90.0°
C3	C21	C2	S1	34.5°	90.0°
C3	C21	C2	N3	157.7°	90.0°
C21	C3	C41	H20	61.5°	90.0°
C21	C3	C41	H21	57.7°	90.0°
C21	C3	H22	H23	119.3°	90.0°
C3	C21	O5	H25	180.0°	90.0°
O23	P2	O11	O21	120.0°	90.0°
O23	P2	O11	P1	104.1°	90.0°
O23	P2	O21	H1	130.1°	90.0°
P2	O11	P1	O12	171.9°	90.0°
P2	O11	P1	O5G	71.6°	90.0°
P2	O11	P1	O13	43.9°	90.0°
O11	P2	O21	H1	111.2°	90.0°
O11	P2	O23	H2	109.8°	90.0°
O21	P2	O11	P1	15.9°	90.0°
O21	P2	O23	H2	132.0°	90.0°
O11	P1	O12	O5G	113.2°	90.0°
O11	P1	O12	O13	125.9°	90.0°
O11	P1	O5G	O13	119.3°	90.0°
O11	P1	O5G	C5B	77.2°	90.0°
O11	P1	O13	H3	123.0°	90.0°
O5	C21	C2	S1	78.9°	90.0°
O5	C21	C2	N3	88.9°	90.0°
O5	C21	C3	H22	162.3°	90.0°
O5	C21	C3	H23	42.7°	90.0°
C21	C2	S1	N3	169.4°	90.0°
C21	C2	S1	C5	171.5°	90.0°
C21	C2	N3	C35	12.3°	90.0°
C21	C2	N3	C4	169.9°	90.0°
C2	C21	C3	H22	54.4°	90.0°
C2	C21	C3	H23	65.2°	90.0°
C2	C21	O5	H25	61.3°	90.0°
C2	S1	C5	C5A	179.2°	90.0°
C2	S1	C5	C4	1.4°	90.0°
S1	C2	N3	C35	179.9°	90.0°
S1	C2	N3	C4	2.1°	90.0°
C5	S1	C2	N3	2.1°	90.0°
S1	C5	C5A	C5B	64.6°	90.0°
S1	C5	C5A	C4	177.4°	90.0°
S1	C5	C4	N3	0.6°	90.0°
S1	C5	C4	C4A	179.6°	90.0°
S1	C5	C5A	H6	174.7°	90.0°
S1	C5	C5A	H7	56.1°	90.0°
C2	N3	C4	C5	0.9°	90.0°
C2	N3	C35	C4	177.6°	90.0°
C2	N3	C35	C5'	100.7°	90.0°
C2	N3	C4	C4A	178.8°	90.0°
C2	N3	C35	H11	139.2°	90.0°
C2	N3	C35	H12	19.4°	90.0°
N4'	C4'	N3'	C5'	179.2°	90.0°
N4'	C4'	N3'	C2'	179.4°	90.0°
N4'	C4'	C5'	C35	1.0°	90.0°
N4'	C4'	C5'	C6'	179.8°	90.0°
C4'	N4'	H14	H15	120.0°	90.0°
O12	P1	O5G	O13	126.3°	90.0°
O12	P1	O5G	C5B	37.2°	90.0°
O12	P1	O13	H3	0.0°	90.0°
P1	O5G	C5B	C5A	171.1°	90.0°
O5G	P1	O13	H3	122.6°	90.0°
P1	O5G	C5B	H4	51.3°	90.0°
P1	O5G	C5B	H5	69.1°	90.0°
O13	P1	O5G	C5B	163.5°	90.0°
O5G	C5B	C5A	H4	119.8°	90.0°
O5G	C5B	C5A	H5	119.8°	90.0°
O5G	C5B	C5A	C5	175.9°	90.0°
O5G	C5B	H4	H5	120.6°	90.0°
O5G	C5B	C5A	H6	63.4°	90.0°
O5G	C5B	C5A	H7	55.2°	90.0°
C5B	C5A	C5	H6	120.7°	90.0°
C5B	C5A	C5	H7	120.7°	90.0°
C5B	C5A	C5	C4	118.0°	90.0°
C5A	C5B	H4	H5	120.5°	90.0°
C5B	C5A	H6	H7	117.9°	90.0°
C5A	C5	C4	N3	178.1°	90.0°
C5A	C5	C4	C4A	2.2°	90.0°
C5	C5A	C5B	H4	56.0°	90.0°
C5	C5A	C5B	H5	64.3°	90.0°
C5	C5A	H6	H7	117.9°	90.0°
C5	C4	N3	C35	178.7°	90.0°
C5	C4	N3	C4A	179.8°	90.0°
C4	C5	C5A	H6	2.7°	90.0°
C4	C5	C5A	H7	121.3°	90.0°
C5	C4	C4A	H8	90.1°	90.0°
C5	C4	C4A	H9	149.9°	90.0°
C5	C4	C4A	H10	29.9°	90.0°
N3	C35	C5'	C4'	65.2°	90.0°
N3	C35	C5'	H11	120.1°	90.0°
N3	C35	C5'	H12	120.1°	90.0°
C35	N3	C4	C4A	1.0°	90.0°
N3	C35	C5'	C6'	114.0°	90.0°
N3	C35	H11	H12	119.7°	90.0°
C4	N3	C35	C5'	76.9°	90.0°
N3	C4	C4A	H8	90.1°	90.0°
N3	C4	C4A	H9	29.9°	90.0°
N3	C4	C4A	H10	149.8°	90.0°
C4	N3	C35	H11	43.2°	90.0°
C4	N3	C35	H12	163.0°	90.0°
N3'	C4'	C5'	C35	179.8°	90.0°
N3'	C4'	C5'	C6'	0.6°	90.0°
C4'	N3'	C2'	C2A	179.8°	90.0°
C4'	N3'	C2'	N1'	0.0°	90.0°
N3'	C4'	N4'	H14	0.0°	90.0°
N3'	C4'	N4'	H15	120.0°	90.0°
C5'	C4'	N3'	C2'	0.3°	90.0°
C4'	C5'	C35	C6'	179.2°	90.0°
C4'	C5'	C6'	N1'	0.7°	90.0°
C4'	C5'	C35	H11	174.7°	90.0°
C4'	C5'	C35	H12	54.9°	90.0°
C4'	C5'	C6'	H13	179.2°	90.0°
C5'	C4'	N4'	H14	179.2°	90.0°
C5'	C4'	N4'	H15	59.1°	90.0°
N3'	C2'	C2A	N1'	179.8°	90.0°
N3'	C2'	N1'	C6'	0.1°	90.0°
N3'	C2'	C2A	H16	0.0°	90.0°
N3'	C2'	C2A	H17	120.0°	90.0°
N3'	C2'	C2A	H18	120.0°	90.0°
C35	C5'	C6'	N1'	180.0°	90.0°
C5'	C35	H11	H12	119.7°	90.0°
C35	C5'	C6'	H13	0.0°	90.0°
C4	C4A	H8	H9	120.0°	90.0°
C4	C4A	H8	H10	120.0°	90.0°
C4	C4A	H9	H10	120.0°	90.0°
C5'	C6'	N1'	C2'	0.5°	90.0°
C5'	C6'	N1'	H13	180.0°	90.0°
C6'	C5'	C35	H11	6.1°	90.0°
C6'	C5'	C35	H12	125.9°	90.0°
C2A	C2'	N1'	C6'	179.6°	90.0°
C2'	C2A	H16	H17	120.0°	90.0°
C2'	C2A	H16	H18	120.0°	90.0°
C2'	C2A	H17	H18	120.0°	90.0°
C2'	N1'	C6'	H13	179.5°	90.0°
N1'	C2'	C2A	H16	179.8°	90.0°
N1'	C2'	C2A	H17	59.8°	90.0°
N1'	C2'	C2A	H18	60.2°	90.0°
H4	C5B	C5A	H6	176.7°	90.0°
H4	C5B	C5A	H7	64.7°	90.0°
H5	C5B	C5A	H6	56.4°	90.0°
H5	C5B	C5A	H7	175.0°	90.0°
H8	C4A	H9	H10	120.0°	90.0°
H16	C2A	H17	H18	120.0°	90.0°
H20	C41	C3	H22	178.3°	90.0°
H20	C41	C3	H23	58.8°	90.0°
H21	C41	C3	H22	62.6°	90.0°
H21	C41	C3	H23	177.9°	90.0°

Release date:	2016-06-22
Definition date:	2015-11-17
Last modified:	2024-09-25
Release status:	REL
Processing site:	RCSB
Derived from:	5ESS